Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0013767

Physical Location & Seq

Genomic Coordinates Reverse (-)

42805442 .. 42806623

Gene Structure 1182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000034444

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGCTGCCGAGCTCATGCACATCTTCAGCTTCCTCTCTCCTATCCCAGACTTGTTGAAAACTATGGTTGGTTTTAATGTGTTGTTCTTCCTGGACTTTGTGAGCCCAACAAAGTTTGACAACAGCTACTTCAAGATCTTATTGGCTAACAAGGGCCTGCTTAACTCTGACCAAGTTCTTGTTACAAAGAGTGAAGTAGCCAAGCAATTGGTTCAGCAATATGCAGTGAACAACAAGCTTTTCCTCGAGCAATTTGCCAAGTCCATGATTAAGATGGGGAATCTTTTACCAATTACAGGTTCAAGGGGAGAGATCAGAAAGAATTGCAGGAAGGTCAACTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009505 GO:0009636 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009845 GO:0009987 GO:0010154 GO:0010383 GO:0016209 GO:0016491 GO:0016684 GO:0016998 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044347 GO:0044464 GO:0044550 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071554 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

116

Amino Acids

13.07

Weight (kDa)

9.63

Isoelectric Point (pI)

37.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	28 - 76	1.4e-09	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013767)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024911 RchiOBHm_Chr7g0212091 RchiOBHm_Chr7g0234291
rosa_laevigata	RLG00000003091 RLG00000034444
rosa_multiflora	Rmu_sc0002775.1_g000016 Rmu_sc0021904.1_g000008 Rmu_ssc0000047.1_g000008
rosa_roxburghii	Rroxscaffold_2G00142410 Rroxscaffold_3G00245830
rosa_samantha	Rh5CG191800 Rh5DG176100 Rh7AG415000 Rh7AG439700 Rh7CG075700 Rh7DG143600 Rh7DG429400
rosa_wichuraiana	Rw1G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	10
AfiI	CCNNNNNNNGG	1 cut(s)	296
AgsI	TTSAA	3 cut(s)	58, 133, 303
AjnI	CCWGG	1 cut(s)	90
AjuI	GAANNNNNNNTTGG	2 cut(s)	283, 315
AluBI	AGCT	4 cut(s)	13, 30, 126, 238
AluI	AGCT	4 cut(s)	13, 30, 126, 238
Alw21I	GWGCWC	1 cut(s)	15
Ama87I	CYCGRG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	154
ApeKI	GCWGC	1 cut(s)	5
AspS9I	GGNCC	1 cut(s)	154
AvaI	CYCGRG	1 cut(s)	245
BanII	GRGCYC	2 cut(s)	15, 107
BarI	GAAGNNNNNNTAC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	15
BccI	CCATC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	236, 270
BciT130I	CCWGG	1 cut(s)	92
BglII	AGATCT	1 cut(s)	135
BisI	GCNGC	1 cut(s)	6
BlsI	GCNGC	1 cut(s)	7
Bme1390I	CCNGG	1 cut(s)	92
BmeT110I	CYCGRG	1 cut(s)	245
BmgT120I	GGNCC	1 cut(s)	154
BmrFI	CCNGG	1 cut(s)	92
Bsc4I	CCNNNNNNNGG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	92
BseLI	CCNNNNNNNGG	1 cut(s)	296
BshFI	GGCC	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	15
BsiHKCI	CYCGRG	1 cut(s)	245
BslI	CCNNNNNNNGG	1 cut(s)	296
BsnI	GGCC	1 cut(s)	156
BsoBI	CYCGRG	1 cut(s)	245
Bsp1286I	GDGCHC	2 cut(s)	15, 107
Bsp143I	GATC	2 cut(s)	135, 312
BspANI	GGCC	1 cut(s)	156
BssMI	GATC	2 cut(s)	135, 312
Bst2UI	CCWGG	1 cut(s)	92
BstC8I	GCNNGC	1 cut(s)	158
BstKTI	GATC	2 cut(s)	138, 315
BstMBI	GATC	2 cut(s)	135, 312
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstX2I	RGATCY	1 cut(s)	135
BstXI	CCANNNNNNTGG	1 cut(s)	208
BstYI	RGATCY	1 cut(s)	135
BsuRI	GGCC	1 cut(s)	156
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	158
Cfr13I	GGNCC	1 cut(s)	154
CviAII	CATG	2 cut(s)	16, 265
CviJI	RGCY	9 cut(s)	5, 13, 30, 105, 126, 146, 156, 200, 238
CviKI_1	RGCY	9 cut(s)	5, 13, 30, 105, 126, 146, 156, 200, 238
DpnI	GATC	2 cut(s)	137, 314
DpnII	GATC	2 cut(s)	135, 312
Ecl136II	GAGCTC	1 cut(s)	13
Eco24I	GRGCYC	2 cut(s)	15, 107
Eco53kI	GAGCTC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	10
Eco88I	CYCGRG	1 cut(s)	245
EcoICRI	GAGCTC	1 cut(s)	13
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRII	CCWGG	1 cut(s)	90
EcoT38I	GRGCYC	2 cut(s)	15, 107
FaeI	CATG	2 cut(s)	19, 268
FaiI	YATR	4 cut(s)	17, 65, 222, 266
FatI	CATG	2 cut(s)	15, 264
Fnu4HI	GCNGC	1 cut(s)	6
FriOI	GRGCYC	2 cut(s)	15, 107
Fsp4HI	GCNGC	1 cut(s)	6
GluI	GCNGC	1 cut(s)	6
HaeIII	GGCC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	19, 268
HincII	GTYRAC	1 cut(s)	337
HindII	GTYRAC	1 cut(s)	337
HindIII	AAGCTT	1 cut(s)	236
HinfI	GANTC	1 cut(s)	280
Hpy166II	GTNNAC	2 cut(s)	229, 337
Hpy188I	TCNGA	2 cut(s)	169, 317
Hpy188III	TCNNGA	2 cut(s)	133, 345
Hpy8I	GTNNAC	2 cut(s)	229, 337
HpyAV	CCTTC	1 cut(s)	325
HpyCH4V	TGCA	3 cut(s)	19, 224, 327
Hsp92II	CATG	2 cut(s)	19, 268
Kzo9I	GATC	2 cut(s)	135, 312
LpnPI	CCDG	6 cut(s)	60, 77, 104, 170, 282, 313
MaeIII	GTNAC	1 cut(s)	181
MalI	GATC	2 cut(s)	137, 314
MboI	GATC	2 cut(s)	135, 312
MboII	GAAGA	2 cut(s)	16, 79
MfeI	CAATTG	1 cut(s)	206
MflI	RGATCY	1 cut(s)	135
MhlI	GDGCHC	2 cut(s)	15, 107
MluCI	AATT	4 cut(s)	206, 251, 291, 322
MnlI	CCTC	2 cut(s)	44, 254
MseI	TTAA	3 cut(s)	75, 162, 270
MspR9I	CCNGG	1 cut(s)	92
MunI	CAATTG	1 cut(s)	206
MvaI	CCWGG	1 cut(s)	92
NdeII	GATC	2 cut(s)	135, 312
NlaIII	CATG	2 cut(s)	19, 268
NmeAIII	GCCGAG	1 cut(s)	34
PaeR7I	CTCGAG	1 cut(s)	245
PfeI	GAWTC	1 cut(s)	280
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	1 cut(s)	7
Psp124BI	GAGCTC	1 cut(s)	15
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	154
PspXI	VCTCGAGB	1 cut(s)	245
PsuI	RGATCY	1 cut(s)	135
SacI	GAGCTC	1 cut(s)	15
SaqAI	TTAA	3 cut(s)	75, 162, 270
SatI	GCNGC	1 cut(s)	6
Sau3AI	GATC	2 cut(s)	135, 312
Sau96I	GGNCC	1 cut(s)	154
ScrFI	CCNGG	1 cut(s)	92
SduI	GDGCHC	2 cut(s)	15, 107
SetI	ASST	6 cut(s)	15, 32, 128, 240, 301, 336
Sfr274I	CTCGAG	1 cut(s)	245
SlaI	CTCGAG	1 cut(s)	245
SmlI	CTYRAG	1 cut(s)	245
SmoI	CTYRAG	1 cut(s)	245
Sse9I	AATT	4 cut(s)	206, 251, 291, 322
SstI	GAGCTC	1 cut(s)	15
StyD4I	CCNGG	1 cut(s)	90
TaqI	TCGA	1 cut(s)	246
TasI	AATT	4 cut(s)	206, 251, 291, 322
TfiI	GAWTC	1 cut(s)	280
Tru1I	TTAA	3 cut(s)	75, 162, 270
Tru9I	TTAA	3 cut(s)	75, 162, 270
TscAI	CASTG	1 cut(s)	231
TseI	GCWGC	1 cut(s)	5
TspRI	CASTG	1 cut(s)	231
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.