Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0013767

Physical Location & Seq

Genomic Coordinates Forward (+)

44313637 .. 44314795

Gene Structure 1159 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000003091

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGAGGTGGGAGAAGAACTGAAGCAACCAAAGTGGAAGAGAAGTGTTCCAAAGAGAATCAGCTCATCAAAGTCATCTTCTTCTTTGTCTTGTCTTATAAACAATCTTGATGATGGCTGCCGAGTTCATGCACATCTTCAGCTTCCTCTCTCCTATCCCAGGTTGCAAACTAAGCTATTCACTGAACCAGACTTGTTGAAAACTATGGTTGGTTTTAATGTGCTGTTCTTCCTGGACTTTGTGAGCCCAACAAAGTTTGACAACAGCTACTTCAAGATCTTATTGGCTAACAAGGGCCTGCTTAACTCTGACCAAGTTCTTGTTACAAAGAGTGAAGTAGCCAAGCAATTGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009505 GO:0009636 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009845 GO:0009987 GO:0010154 GO:0010383 GO:0016209 GO:0016491 GO:0016684 GO:0016998 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044347 GO:0044464 GO:0044550 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071554 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

119

Amino Acids

13.36

Weight (kDa)

9.36

Isoelectric Point (pI)

52.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	75 - 115	2.4e-08	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013767)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024911 RchiOBHm_Chr7g0212091 RchiOBHm_Chr7g0234291
rosa_laevigata	RLG00000003091 RLG00000034444
rosa_multiflora	Rmu_sc0002775.1_g000016 Rmu_sc0021904.1_g000008 Rmu_ssc0000047.1_g000008
rosa_roxburghii	Rroxscaffold_2G00142410 Rroxscaffold_3G00245830
rosa_samantha	Rh5CG191800 Rh5DG176100 Rh7AG415000 Rh7AG439700 Rh7CG075700 Rh7DG143600 Rh7DG429400
rosa_wichuraiana	Rw1G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AcuI	CTGAAG	2 cut(s)	41, 122
AfiI	CCNNNNNNNGG	1 cut(s)	159
AgsI	TTSAA	2 cut(s)	199, 274
AjnI	CCWGG	2 cut(s)	158, 231
AluBI	AGCT	4 cut(s)	63, 142, 175, 267
AluI	AGCT	4 cut(s)	63, 142, 175, 267
AoxI	GGCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	117
AspS9I	GGNCC	1 cut(s)	295
BanII	GRGCYC	1 cut(s)	248
BbvI	GCAGC	1 cut(s)	104
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	2 cut(s)	160, 233
BglII	AGATCT	1 cut(s)	276
BisI	GCNGC	1 cut(s)	118
BlsI	GCNGC	1 cut(s)	119
Bme1390I	CCNGG	2 cut(s)	160, 233
BmgT120I	GGNCC	1 cut(s)	295
BmrFI	CCNGG	2 cut(s)	160, 233
BsaJI	CCNNGG	1 cut(s)	158
Bsc4I	CCNNNNNNNGG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	160, 233
BseDI	CCNNGG	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	159
BseXI	GCAGC	1 cut(s)	104
BshFI	GGCC	1 cut(s)	297
BslI	CCNNNNNNNGG	1 cut(s)	159
BsnI	GGCC	1 cut(s)	297
Bsp1286I	GDGCHC	1 cut(s)	248
Bsp143I	GATC	1 cut(s)	276
BspANI	GGCC	1 cut(s)	297
BssECI	CCNNGG	1 cut(s)	158
BssMI	GATC	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	160, 233
Bst6I	CTCTTC	1 cut(s)	32
BstC8I	GCNNGC	1 cut(s)	299
BstDEI	CTNAG	1 cut(s)	171
BstENI	CCTNNNNNAGG	1 cut(s)	157
BstKTI	GATC	1 cut(s)	279
BstMBI	GATC	1 cut(s)	276
BstMWI	GCNNNNNNNGC	1 cut(s)	172
BstNI	CCWGG	2 cut(s)	160, 233
BstSCI	CCNGG	2 cut(s)	158, 231
BstV1I	GCAGC	1 cut(s)	104
BstX2I	RGATCY	1 cut(s)	276
BstXI	CCANNNNNNTGG	1 cut(s)	349
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	297
BtsIMutI	CAGTG	1 cut(s)	180
Cac8I	GCNNGC	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	295
CspCI	CAANNNNNGTGG	2 cut(s)	14, 49
CviAII	CATG	1 cut(s)	128
CviJI	RGCY	9 cut(s)	63, 117, 142, 175, 246, 267, 287, 297, 341
CviKI_1	RGCY	9 cut(s)	63, 117, 142, 175, 246, 267, 287, 297, 341
DdeI	CTNAG	1 cut(s)	171
DpnI	GATC	1 cut(s)	278
DpnII	GATC	1 cut(s)	276
Eam1104I	CTCTTC	1 cut(s)	32
EarI	CTCTTC	1 cut(s)	32
Eco24I	GRGCYC	1 cut(s)	248
Eco57I	CTGAAG	2 cut(s)	41, 122
EcoNI	CCTNNNNNAGG	1 cut(s)	157
EcoO109I	RGGNCCY	1 cut(s)	295
EcoRII	CCWGG	2 cut(s)	158, 231
EcoT38I	GRGCYC	1 cut(s)	248
FaeI	CATG	1 cut(s)	131
FaiI	YATR	3 cut(s)	98, 129, 206
FatI	CATG	1 cut(s)	127
Fnu4HI	GCNGC	1 cut(s)	118
FriOI	GRGCYC	1 cut(s)	248
Fsp4HI	GCNGC	1 cut(s)	118
GluI	GCNGC	1 cut(s)	118
HaeIII	GGCC	1 cut(s)	297
Hin1II	CATG	1 cut(s)	131
HinfI	GANTC	1 cut(s)	57
Hpy188I	TCNGA	1 cut(s)	310
Hpy188III	TCNNGA	2 cut(s)	107, 274
HpyCH4V	TGCA	2 cut(s)	131, 166
HpyF10VI	GCNNNNNNNGC	1 cut(s)	172
HpyF3I	CTNAG	1 cut(s)	171
Hsp92II	CATG	1 cut(s)	131
Kzo9I	GATC	1 cut(s)	276
LpnPI	CCDG	6 cut(s)	145, 172, 201, 218, 245, 311
Lsp1109I	GCAGC	1 cut(s)	104
MaeIII	GTNAC	1 cut(s)	322
MalI	GATC	1 cut(s)	278
MboI	GATC	1 cut(s)	276
MboII	GAAGA	6 cut(s)	26, 49, 69, 72, 128, 220
MfeI	CAATTG	1 cut(s)	347
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	1 cut(s)	248
MluCI	AATT	1 cut(s)	347
MnlI	CCTC	1 cut(s)	156
MseI	TTAA	2 cut(s)	216, 303
MspR9I	CCNGG	2 cut(s)	160, 233
MunI	CAATTG	1 cut(s)	347
MvaI	CCWGG	2 cut(s)	160, 233
MwoI	GCNNNNNNNGC	1 cut(s)	172
NdeII	GATC	1 cut(s)	276
NlaIII	CATG	1 cut(s)	131
NmeAIII	GCCGAG	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	57
PfoI	TCCNGGA	1 cut(s)	231
PkrI	GCNGC	1 cut(s)	119
PsiI	TTATAA	1 cut(s)	98
Psp6I	CCWGG	2 cut(s)	158, 231
PspGI	CCWGG	2 cut(s)	158, 231
PspPI	GGNCC	1 cut(s)	295
PsuI	RGATCY	1 cut(s)	276
SaqAI	TTAA	2 cut(s)	216, 303
SatI	GCNGC	1 cut(s)	118
Sau3AI	GATC	1 cut(s)	276
Sau96I	GGNCC	1 cut(s)	295
ScrFI	CCNGG	2 cut(s)	160, 233
SduI	GDGCHC	1 cut(s)	248
SetI	ASST	6 cut(s)	9, 65, 144, 164, 177, 269
Sse9I	AATT	1 cut(s)	347
StyD4I	CCNGG	2 cut(s)	158, 231
TasI	AATT	1 cut(s)	347
TfiI	GAWTC	1 cut(s)	57
Tru1I	TTAA	2 cut(s)	216, 303
Tru9I	TTAA	2 cut(s)	216, 303
TscAI	CASTG	1 cut(s)	187
TseI	GCWGC	1 cut(s)	117
TspDTI	ATGAA	1 cut(s)	116
TspRI	CASTG	1 cut(s)	187
XagI	CCTNNNNNAGG	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.