RchiOBHm_Chr7g0234291

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0013767
Physical Location & Seq
Reverse (-)
58926945 .. 58928486
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20997

Sequence Viewer

Length: 303 bp
ATGAACCATCTTCCAAATGCTGCCAGTTTGAGGAACAATTGCCCAAGATCTGGTGGAGACCAAAACCTGTTCTTCCTGGACTTTGTGAGCCCAACAAAGTTTGACAACAGCTACTTCAAGAACTTATTGGCTAACAAGGGCCTGCTTAACTCTGACCAAGTTCTTGTTACAAAGAGTGAAGTAGCCAAGCAATTGGTTCAACAATATGCAGTGAACAACGAGCTTTTCCTCGAGCAATTTGCCAAGTCCATGATTAAGATGGGGAATCTTTCACCAATTACAGGTTCAAGGGGAGAGATCTGA

Protein Analysis

100

Amino Acids

11.14

Weight (kDa)

8.85

Isoelectric Point (pI)

41.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 7 - 71 1.3e-14 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 50
AfiI CCNNNNNNNGG 3 cut(s) 30, 50, 281
AgsI TTSAA 3 cut(s) 118, 200, 288
AjnI CCWGG 1 cut(s) 75
AjuI GAANNNNNNNTTGG 2 cut(s) 268, 300
AluBI AGCT 2 cut(s) 111, 223
AluI AGCT 2 cut(s) 111, 223
Alw26I GTCTC 1 cut(s) 51
Ama87I CYCGRG 1 cut(s) 230
AoxI GGCC 1 cut(s) 139
ApeKI GCWGC 1 cut(s) 20
AspS9I GGNCC 1 cut(s) 139
AsuHPI GGTGA 1 cut(s) 264
AvaI CYCGRG 1 cut(s) 230
BanII GRGCYC 1 cut(s) 92
BbvI GCAGC 1 cut(s) 7
BccI CCATC 2 cut(s) 15, 253
BcgI CGANNNNNNTGC 2 cut(s) 221, 255
BciT130I CCWGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 51
BglII AGATCT 2 cut(s) 47, 297
BisI GCNGC 1 cut(s) 21
BlsI GCNGC 1 cut(s) 22
Bme1390I CCNGG 1 cut(s) 77
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 139
BmrFI CCNGG 1 cut(s) 77
BsaI GGTCTC 1 cut(s) 51
Bsc4I CCNNNNNNNGG 3 cut(s) 30, 50, 281
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 1 cut(s) 77
BseLI CCNNNNNNNGG 3 cut(s) 30, 50, 281
BseNI ACTGG 1 cut(s) 24
BseXI GCAGC 1 cut(s) 7
BshFI GGCC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 230
BslI CCNNNNNNNGG 3 cut(s) 30, 50, 281
BsmAI GTCTC 1 cut(s) 51
BsnI GGCC 1 cut(s) 141
Bso31I GGTCTC 1 cut(s) 51
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 2 cut(s) 47, 297
BspANI GGCC 1 cut(s) 141
BspTNI GGTCTC 1 cut(s) 51
BsrI ACTGG 1 cut(s) 24
BssMI GATC 2 cut(s) 47, 297
Bst2UI CCWGG 1 cut(s) 77
BstC8I GCNNGC 1 cut(s) 143
BstKTI GATC 2 cut(s) 50, 300
BstMAI GTCTC 1 cut(s) 51
BstMBI GATC 2 cut(s) 47, 297
BstNI CCWGG 1 cut(s) 77
BstSCI CCNGG 1 cut(s) 75
BstV1I GCAGC 1 cut(s) 7
BstX2I RGATCY 2 cut(s) 47, 297
BstXI CCANNNNNNTGG 1 cut(s) 193
BstYI RGATCY 2 cut(s) 47, 297
BsuRI GGCC 1 cut(s) 141
BtsI GCAGTG 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 143
Cfr13I GGNCC 1 cut(s) 139
CviAII CATG 1 cut(s) 250
CviJI RGCY 6 cut(s) 90, 111, 131, 141, 185, 223
CviKI_1 RGCY 6 cut(s) 90, 111, 131, 141, 185, 223
DpnI GATC 2 cut(s) 49, 299
DpnII GATC 2 cut(s) 47, 297
Eco24I GRGCYC 1 cut(s) 92
Eco31I GGTCTC 1 cut(s) 51
Eco88I CYCGRG 1 cut(s) 230
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 1 cut(s) 75
EcoT38I GRGCYC 1 cut(s) 92
FaeI CATG 1 cut(s) 253
FaiI YATR 2 cut(s) 207, 251
FatI CATG 1 cut(s) 249
Fnu4HI GCNGC 1 cut(s) 21
FriOI GRGCYC 1 cut(s) 92
Fsp4HI GCNGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 21
HaeIII GGCC 1 cut(s) 141
Hin1II CATG 1 cut(s) 253
HinfI GANTC 1 cut(s) 265
HphI GGTGA 1 cut(s) 264
Hpy166II GTNNAC 1 cut(s) 214
Hpy188I TCNGA 2 cut(s) 154, 302
Hpy188III TCNNGA 1 cut(s) 118
Hpy8I GTNNAC 1 cut(s) 214
HpyCH4V TGCA 1 cut(s) 209
Hsp92II CATG 1 cut(s) 253
Kzo9I GATC 2 cut(s) 47, 297
LpnPI CCDG 7 cut(s) 36, 37, 62, 80, 89, 155, 267
Lsp1109I GCAGC 1 cut(s) 7
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 49, 299
MboI GATC 2 cut(s) 47, 297
MboII GAAGA 1 cut(s) 64
MfeI CAATTG 2 cut(s) 37, 191
MflI RGATCY 2 cut(s) 47, 297
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 4 cut(s) 37, 191, 236, 276
MnlI CCTC 2 cut(s) 24, 239
MseI TTAA 2 cut(s) 147, 255
MspR9I CCNGG 1 cut(s) 77
MunI CAATTG 2 cut(s) 37, 191
MvaI CCWGG 1 cut(s) 77
NdeII GATC 2 cut(s) 47, 297
NlaIII CATG 1 cut(s) 253
PaeR7I CTCGAG 1 cut(s) 230
PfeI GAWTC 1 cut(s) 265
PflMI CCANNNNNTGG 1 cut(s) 50
PfoI TCCNGGA 1 cut(s) 75
PkrI GCNGC 1 cut(s) 22
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PspPI GGNCC 1 cut(s) 139
PspXI VCTCGAGB 1 cut(s) 230
PsuI RGATCY 2 cut(s) 47, 297
SaqAI TTAA 2 cut(s) 147, 255
SatI GCNGC 1 cut(s) 21
Sau3AI GATC 2 cut(s) 47, 297
Sau96I GGNCC 1 cut(s) 139
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 92
SetI ASST 4 cut(s) 69, 113, 225, 286
Sfr274I CTCGAG 1 cut(s) 230
SlaI CTCGAG 1 cut(s) 230
SmlI CTYRAG 1 cut(s) 230
SmoI CTYRAG 1 cut(s) 230
Sse9I AATT 4 cut(s) 37, 191, 236, 276
StyD4I CCNGG 1 cut(s) 75
TaqI TCGA 1 cut(s) 231
TasI AATT 4 cut(s) 37, 191, 236, 276
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 2 cut(s) 147, 255
Tru9I TTAA 2 cut(s) 147, 255
TscAI CASTG 1 cut(s) 216
TseI GCWGC 1 cut(s) 20
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 216
Van91I CCANNNNNTGG 1 cut(s) 50
XcmI CCANNNNNNNNNTGG 1 cut(s) 256
XhoI CTCGAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.