Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0013767

Physical Location & Seq

Genomic Coordinates Forward (+)

55794067 .. 55794399

Gene Structure 333 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG415000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 333 bp

ATGAACCATCTTCCAAATGCTGCCAGTTTGAGGAACAATTGCCCAAGATCTGGTGGAGACCAAAACCTGTTCTTCCTAGACTTTGTGAGCCCAACAAAGTTTGACAACAGCTACTTCAAGAACTTATTGGCTAACAAGGGCCTGCTTAACTCTGACCAAGTTCTTGTTACAAAGAGTGAAGTAGCCAAGCAATTGCTTCAGCAATATGCAATGAACAACGAGTTTTTCCTCGAGCAATTTGCCAAGTCCATGATTAAGATGGGGAATCTTTCACCAATTACAGGTTCAAGGGGAGAGATCAGAAAGAATTGCAGGAATGTCAACTACTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004601 GO:0005575 GO:0005618 GO:0005623 GO:0005975 GO:0005976 GO:0006725 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009058 GO:0009505 GO:0009636 GO:0009698 GO:0009699 GO:0009791 GO:0009808 GO:0009809 GO:0009845 GO:0009987 GO:0010154 GO:0010383 GO:0016209 GO:0016491 GO:0016684 GO:0016998 GO:0019438 GO:0019748 GO:0022414 GO:0030312 GO:0032501 GO:0032502 GO:0032504 GO:0042221 GO:0043170 GO:0044036 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044347 GO:0044464 GO:0044550 GO:0048316 GO:0048608 GO:0048609 GO:0048731 GO:0048856 GO:0050896 GO:0051716 GO:0055114 GO:0061458 GO:0070887 GO:0071554 GO:0071704 GO:0071944 GO:0080001 GO:0090351 GO:0097237 GO:0098754 GO:0098869 GO:1901360 GO:1901362 GO:1901576 GO:1990748

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

110

Amino Acids

12.45

Weight (kDa)

9.47

Isoelectric Point (pI)

42.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	7 - 70	7.8e-14	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0013767)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0024911 RchiOBHm_Chr7g0212091 RchiOBHm_Chr7g0234291
rosa_laevigata	RLG00000003091 RLG00000034444
rosa_multiflora	Rmu_sc0002775.1_g000016 Rmu_sc0021904.1_g000008 Rmu_ssc0000047.1_g000008
rosa_roxburghii	Rroxscaffold_2G00142410 Rroxscaffold_3G00245830
rosa_samantha	Rh5CG191800 Rh5DG176100 Rh7AG415000 Rh7AG439700 Rh7CG075700 Rh7DG143600 Rh7DG429400
rosa_wichuraiana	Rw1G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	50
AcuI	CTGAAG	1 cut(s)	182
AfiI	CCNNNNNNNGG	3 cut(s)	30, 50, 281
AgsI	TTSAA	2 cut(s)	118, 288
AjuI	GAANNNNNNNTTGG	2 cut(s)	268, 300
AluBI	AGCT	1 cut(s)	111
AluI	AGCT	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	51
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	139
ApeKI	GCWGC	1 cut(s)	20
AspS9I	GGNCC	1 cut(s)	139
AsuHPI	GGTGA	1 cut(s)	264
AvaI	CYCGRG	1 cut(s)	230
BanII	GRGCYC	1 cut(s)	92
BbvI	GCAGC	1 cut(s)	7
BccI	CCATC	2 cut(s)	15, 253
BcgI	CGANNNNNNTGC	2 cut(s)	221, 255
BcoDI	GTCTC	1 cut(s)	51
BfaI	CTAG	1 cut(s)	77
BglII	AGATCT	1 cut(s)	47
BisI	GCNGC	1 cut(s)	21
BlsI	GCNGC	1 cut(s)	22
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	139
BsaI	GGTCTC	1 cut(s)	51
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 50, 281
Bse1I	ACTGG	1 cut(s)	24
Bse3DI	GCAATG	1 cut(s)	216
BseLI	CCNNNNNNNGG	3 cut(s)	30, 50, 281
BseMI	GCAATG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	24
BseXI	GCAGC	1 cut(s)	7
BshFI	GGCC	1 cut(s)	141
BsiHKCI	CYCGRG	1 cut(s)	230
BslI	CCNNNNNNNGG	3 cut(s)	30, 50, 281
BsmAI	GTCTC	1 cut(s)	51
BsnI	GGCC	1 cut(s)	141
Bso31I	GGTCTC	1 cut(s)	51
BsoBI	CYCGRG	1 cut(s)	230
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	2 cut(s)	47, 297
BspANI	GGCC	1 cut(s)	141
BspTNI	GGTCTC	1 cut(s)	51
BsrDI	GCAATG	1 cut(s)	216
BsrI	ACTGG	1 cut(s)	24
BssMI	GATC	2 cut(s)	47, 297
BstC8I	GCNNGC	1 cut(s)	143
BstKTI	GATC	2 cut(s)	50, 300
BstMAI	GTCTC	1 cut(s)	51
BstMBI	GATC	2 cut(s)	47, 297
BstV1I	GCAGC	1 cut(s)	7
BstX2I	RGATCY	1 cut(s)	47
BstYI	RGATCY	1 cut(s)	47
BsuRI	GGCC	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	143
Cfr13I	GGNCC	1 cut(s)	139
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	5 cut(s)	90, 111, 131, 141, 185
CviKI_1	RGCY	5 cut(s)	90, 111, 131, 141, 185
DpnI	GATC	2 cut(s)	49, 299
DpnII	GATC	2 cut(s)	47, 297
Eco24I	GRGCYC	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	51
Eco57I	CTGAAG	1 cut(s)	182
Eco88I	CYCGRG	1 cut(s)	230
EcoO109I	RGGNCCY	1 cut(s)	139
EcoT38I	GRGCYC	1 cut(s)	92
FaeI	CATG	1 cut(s)	253
FaiI	YATR	2 cut(s)	207, 251
FatI	CATG	1 cut(s)	249
Fnu4HI	GCNGC	1 cut(s)	21
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	1 cut(s)	21
FspBI	CTAG	1 cut(s)	77
GluI	GCNGC	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	141
Hin1II	CATG	1 cut(s)	253
HincII	GTYRAC	1 cut(s)	322
HindII	GTYRAC	1 cut(s)	322
HinfI	GANTC	1 cut(s)	265
HphI	GGTGA	1 cut(s)	264
Hpy166II	GTNNAC	1 cut(s)	322
Hpy188I	TCNGA	2 cut(s)	154, 302
Hpy188III	TCNNGA	2 cut(s)	118, 330
Hpy8I	GTNNAC	1 cut(s)	322
HpyCH4V	TGCA	2 cut(s)	209, 312
Hsp92II	CATG	1 cut(s)	253
Kzo9I	GATC	2 cut(s)	47, 297
LpnPI	CCDG	6 cut(s)	36, 37, 80, 155, 267, 298
Lsp1109I	GCAGC	1 cut(s)	7
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	166
MalI	GATC	2 cut(s)	49, 299
MboI	GATC	2 cut(s)	47, 297
MboII	GAAGA	1 cut(s)	64
MfeI	CAATTG	2 cut(s)	37, 191
MflI	RGATCY	1 cut(s)	47
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	5 cut(s)	37, 191, 236, 276, 307
MnlI	CCTC	2 cut(s)	24, 239
MseI	TTAA	2 cut(s)	147, 255
MunI	CAATTG	2 cut(s)	37, 191
NdeII	GATC	2 cut(s)	47, 297
NlaIII	CATG	1 cut(s)	253
PaeR7I	CTCGAG	1 cut(s)	230
PfeI	GAWTC	1 cut(s)	265
PflMI	CCANNNNNTGG	1 cut(s)	50
PkrI	GCNGC	1 cut(s)	22
PspPI	GGNCC	1 cut(s)	139
PspXI	VCTCGAGB	1 cut(s)	230
PsuI	RGATCY	1 cut(s)	47
SaqAI	TTAA	2 cut(s)	147, 255
SatI	GCNGC	1 cut(s)	21
Sau3AI	GATC	2 cut(s)	47, 297
Sau96I	GGNCC	1 cut(s)	139
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	3 cut(s)	69, 113, 286
Sfr274I	CTCGAG	1 cut(s)	230
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	1 cut(s)	230
SmoI	CTYRAG	1 cut(s)	230
Sse9I	AATT	5 cut(s)	37, 191, 236, 276, 307
SspMI	CTAG	1 cut(s)	77
TaqI	TCGA	1 cut(s)	231
TasI	AATT	5 cut(s)	37, 191, 236, 276, 307
TfiI	GAWTC	1 cut(s)	265
Tru1I	TTAA	2 cut(s)	147, 255
Tru9I	TTAA	2 cut(s)	147, 255
TseI	GCWGC	1 cut(s)	20
TspDTI	ATGAA	2 cut(s)	17, 227
Van91I	CCANNNNNTGG	1 cut(s)	50
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XhoI	CTCGAG	1 cut(s)	230
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.