RchiOBHm_Chr7g0213511

Ubiquitin-like domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0015785
Physical Location & Seq
Reverse (-)
30611078 .. 30612249
1172 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19110

Sequence Viewer

Length: 540 bp
ATGACAACTGAAAAGGCTTGCGCGTTACGAAATTCAGAGGCCTCCAAAAATGGGAGGTATGATGCTCATCCAATTTCGATCTTTGTGAAAACCCTAACCGGCAAGACCATCACCCTTGAGGTGGAGAGCTCTGACACCATCGACAACGTCAAAGCCAAGATCCAGGACAAGGAGGGCATCCCTCCAGATCAACAGAGGCTCATCTTCGCCGGCAAACAACTTGAGGACGGCCGGACCCTCGCTGACTACAATATCCAGAAGGAGGCGACTCTCCATCTCGTGCTCAGGCTTCGCGGTGGCATGCAGATTTTTGTGAAGACTTTGACTGGCAAGACCATCACTCTGGAGGTGGAGAGCTCCGATACCATTGACAATGTCAAAGCTAAGATTCAGGATAAGGAGGGTATCCCGCCGGATCAGCAAAGGCTGATCTTTGCAGGAAAGCAATTGGAGGATGGTCGTACATTGGCCGATTATAATATCCAGAAAGAGTCTACCCTGCACCTTGTTCTTCGTCTCCGCGGTGGTGCTGATTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03320 map03320
Pfam Domains
Protein Families
ubiquitin

Protein Analysis

179

Amino Acids

19.92

Weight (kDa)

6.84

Isoelectric Point (pI)

29.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Rad60-SLD PF11976 25 - 95 4.5e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 27 - 98 5.7e-32 Ubiquitin family
Rad60-SLD PF11976 101 - 171 2e-17 Ubiquitin-2 like Rad60 SUMO-like
ubiquitin PF00240 103 - 174 2.6e-32 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015785)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G05050 AT4G05320
fragaria_vesca FvH4_6g15632
malus_domestica MD03G1210400.v1.1
pyrus_communis pycom12g11960
rosa_chinensis RchiOBHm_Chr7g0210981 RchiOBHm_Chr7g0213511
rosa_roxburghii Rroxscaffold_3G00245820
rosa_samantha Rh7AG255300 Rh7AG275800 Rh7CG271900 Rh7CG294700
rosa_wichuraiana Rw0G023470 Rw7G021840 Rw7G023830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
AccI GTMKAC 1 cut(s) 494
AccII CGCG 3 cut(s) 23, 294, 522
AciI CCGC 4 cut(s) 294, 410, 520, 522
AclWI GGATC 2 cut(s) 154, 423
AcoI YGGCCR 2 cut(s) 229, 468
AcsI RAATTY 1 cut(s) 31
AfaI GTAC 1 cut(s) 463
AfiI CCNNNNNNNGG 4 cut(s) 51, 121, 169, 262
AjnI CCWGG 1 cut(s) 162
AluBI AGCT 3 cut(s) 129, 357, 383
AluI AGCT 3 cut(s) 129, 357, 383
Alw21I GWGCWC 3 cut(s) 131, 285, 359
Alw26I GTCTC 1 cut(s) 521
AlwI GGATC 2 cut(s) 154, 423
AoxI GGCC 3 cut(s) 39, 229, 468
ApoI RAATTY 1 cut(s) 31
AspLEI GCGC 1 cut(s) 23
AspS9I GGNCC 1 cut(s) 234
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 234
BanII GRGCYC 2 cut(s) 131, 359
BauI CACGAG 1 cut(s) 278
BbsI GAAGAC 1 cut(s) 323
Bbv12I GWGCWC 3 cut(s) 131, 285, 359
BccI CCATC 5 cut(s) 116, 146, 282, 344, 449
BceAI ACGGC 1 cut(s) 244
BciT130I CCWGG 1 cut(s) 164
BciVI GTATCC 1 cut(s) 416
BcoDI GTCTC 1 cut(s) 521
BfuI GTATCC 1 cut(s) 416
Bme1390I CCNGG 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 234
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 164
BmsI GCATC 2 cut(s) 52, 186
BpiI GAAGAC 1 cut(s) 323
BpmI CTGGAG 2 cut(s) 168, 365
Bpu10I CCTNAGC 1 cut(s) 284
BpuEI CTTGAG 2 cut(s) 137, 242
BsaBI GATNNNNATC 1 cut(s) 66
BsaJI CCNNGG 1 cut(s) 520
Bsc4I CCNNNNNNNGG 4 cut(s) 51, 121, 169, 262
Bse118I RCCGGY 2 cut(s) 98, 209
Bse1I ACTGG 1 cut(s) 331
Bse8I GATNNNNATC 1 cut(s) 66
BseBI CCWGG 1 cut(s) 164
BseDI CCNNGG 1 cut(s) 520
BseGI GGATG 3 cut(s) 67, 177, 460
BseJI GATNNNNATC 1 cut(s) 66
BseLI CCNNNNNNNGG 4 cut(s) 51, 121, 169, 262
BseMII CTCAG 1 cut(s) 298
BseNI ACTGG 1 cut(s) 331
BseX3I CGGCCG 1 cut(s) 229
BsgI GTGCAG 1 cut(s) 485
Bsh1236I CGCG 3 cut(s) 23, 294, 522
Bsh1285I CGRYCG 1 cut(s) 232
BshFI GGCC 3 cut(s) 41, 231, 470
BsiEI CGRYCG 1 cut(s) 232
BsiHKAI GWGCWC 3 cut(s) 131, 285, 359
BsiSI CCGG 4 cut(s) 99, 210, 232, 413
BslI CCNNNNNNNGG 4 cut(s) 51, 121, 169, 262
BsmAI GTCTC 1 cut(s) 521
BsmBI CGTCTC 1 cut(s) 521
BsnI GGCC 3 cut(s) 41, 231, 470
Bsp1286I GDGCHC 3 cut(s) 131, 285, 359
Bsp143I GATC 5 cut(s) 78, 159, 187, 415, 429
BspACI CCGC 4 cut(s) 294, 410, 520, 522
BspANI GGCC 3 cut(s) 41, 231, 470
BspCNI CTCAG 1 cut(s) 297
BspFNI CGCG 3 cut(s) 23, 294, 522
BspLI GGNNCC 1 cut(s) 236
BspPI GGATC 2 cut(s) 154, 423
BsrFI RCCGGY 2 cut(s) 98, 209
BsrI ACTGG 1 cut(s) 331
BssAI RCCGGY 2 cut(s) 98, 209
BssECI CCNNGG 1 cut(s) 520
BssMI GATC 5 cut(s) 78, 159, 187, 415, 429
BssSI CACGAG 1 cut(s) 278
Bst2BI CACGAG 1 cut(s) 278
Bst2UI CCWGG 1 cut(s) 164
BstC8I GCNNGC 3 cut(s) 19, 211, 302
BstDEI CTNAG 2 cut(s) 284, 384
BstDSI CCRYGG 1 cut(s) 520
BstF5I GGATG 3 cut(s) 67, 177, 460
BstFNI CGCG 3 cut(s) 23, 294, 522
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 5 cut(s) 81, 162, 190, 418, 432
BstMAI GTCTC 1 cut(s) 521
BstMBI GATC 5 cut(s) 78, 159, 187, 415, 429
BstMCI CGRYCG 1 cut(s) 232
BstMWI GCNNNNNNNGC 1 cut(s) 418
BstNI CCWGG 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 304
BstSCI CCNGG 1 cut(s) 162
BstUI CGCG 3 cut(s) 23, 294, 522
BstV2I GAAGAC 1 cut(s) 323
BstX2I RGATCY 1 cut(s) 159
BstXI CCANNNNNNTGG 1 cut(s) 343
BstYI RGATCY 1 cut(s) 159
BstZI CGGCCG 1 cut(s) 229
BsuI GTATCC 1 cut(s) 416
BsuRI GGCC 3 cut(s) 41, 231, 470
BtgI CCRYGG 1 cut(s) 520
BtsCI GGATG 3 cut(s) 67, 177, 460
Cac8I GCNNGC 3 cut(s) 19, 211, 302
CfoI GCGC 1 cut(s) 23
Cfr10I RCCGGY 2 cut(s) 98, 209
Cfr13I GGNCC 1 cut(s) 234
Cfr42I CCGCGG 1 cut(s) 523
Csp6I GTAC 1 cut(s) 462
CviAII CATG 1 cut(s) 301
CviQI GTAC 1 cut(s) 462
DdeI CTNAG 2 cut(s) 284, 384
DpnI GATC 5 cut(s) 80, 161, 189, 417, 431
DpnII GATC 5 cut(s) 78, 159, 187, 415, 429
EaeI YGGCCR 2 cut(s) 229, 468
EagI CGGCCG 1 cut(s) 229
Ecl136II GAGCTC 2 cut(s) 129, 357
EclXI CGGCCG 1 cut(s) 229
Eco147I AGGCCT 1 cut(s) 41
Eco24I GRGCYC 2 cut(s) 131, 359
Eco47I GGWCC 1 cut(s) 234
Eco52I CGGCCG 1 cut(s) 229
Eco53kI GAGCTC 2 cut(s) 129, 357
EcoICRI GAGCTC 2 cut(s) 129, 357
EcoRII CCWGG 1 cut(s) 162
EcoT38I GRGCYC 2 cut(s) 131, 359
Esp3I CGTCTC 1 cut(s) 521
FaeI CATG 1 cut(s) 304
FaiI YATR 3 cut(s) 60, 302, 477
FatI CATG 1 cut(s) 300
FauI CCCGC 1 cut(s) 417
FblI GTMKAC 1 cut(s) 494
FokI GGATG 3 cut(s) 54, 164, 467
FriOI GRGCYC 2 cut(s) 131, 359
GlaI GCGC 1 cut(s) 22
GsuI CTGGAG 2 cut(s) 168, 365
HaeIII GGCC 3 cut(s) 41, 231, 470
HapII CCGG 4 cut(s) 99, 210, 232, 413
HhaI GCGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 304
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 3 cut(s) 268, 388, 491
HpaII CCGG 4 cut(s) 99, 210, 232, 413
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 495
Hpy188I TCNGA 4 cut(s) 37, 133, 361, 539
Hpy188III TCNNGA 5 cut(s) 185, 256, 344, 392, 484
Hpy8I GTNNAC 1 cut(s) 495
HpyAV CCTTC 1 cut(s) 253
HpyCH4IV ACGT 1 cut(s) 147
HpyCH4V TGCA 3 cut(s) 304, 437, 502
HpyF10VI GCNNNNNNNGC 1 cut(s) 418
HpyF3I CTNAG 2 cut(s) 284, 384
HpySE526I ACGT 1 cut(s) 147
Hsp92II CATG 1 cut(s) 304
HspAI GCGC 1 cut(s) 21
KroI GCCGGC 1 cut(s) 209
KroNI GCCGGC 1 cut(s) 211
KspI CCGCGG 1 cut(s) 523
Kzo9I GATC 5 cut(s) 78, 159, 187, 415, 429
LmnI GCTCC 1 cut(s) 362
LweI GCATC 2 cut(s) 52, 186
MaeII ACGT 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 24
MalI GATC 5 cut(s) 80, 161, 189, 417, 431
MboI GATC 5 cut(s) 78, 159, 187, 415, 429
MboII GAAGA 3 cut(s) 196, 328, 503
MfeI CAATTG 1 cut(s) 446
MflI RGATCY 1 cut(s) 159
MhlI GDGCHC 3 cut(s) 131, 285, 359
MluCI AATT 3 cut(s) 31, 72, 446
MlyI GAGTC 2 cut(s) 262, 500
MroNI GCCGGC 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 522
MspI CCGG 4 cut(s) 99, 210, 232, 413
MspR9I CCNGG 1 cut(s) 164
MunI CAATTG 1 cut(s) 446
MvaI CCWGG 1 cut(s) 164
MvnI CGCG 3 cut(s) 23, 294, 522
MwoI GCNNNNNNNGC 1 cut(s) 418
NaeI GCCGGC 1 cut(s) 211
NdeII GATC 5 cut(s) 78, 159, 187, 415, 429
NgoMIV GCCGGC 1 cut(s) 209
NlaIII CATG 1 cut(s) 304
NlaIV GGNNCC 1 cut(s) 236
NspI RCATGY 1 cut(s) 304
PaeI GCATGC 1 cut(s) 304
PceI AGGCCT 1 cut(s) 41
PdiI GCCGGC 1 cut(s) 211
PfeI GAWTC 1 cut(s) 388
PflFI GACNNNGTC 2 cut(s) 146, 374
PfoI TCCNGGA 1 cut(s) 162
PleI GAGTC 2 cut(s) 262, 499
PpsI GAGTC 2 cut(s) 262, 499
PsiI TTATAA 1 cut(s) 477
Psp124BI GAGCTC 2 cut(s) 131, 359
Psp6I CCWGG 1 cut(s) 162
PspGI CCWGG 1 cut(s) 162
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 1 cut(s) 234
PsuI RGATCY 1 cut(s) 159
PsyI GACNNNGTC 2 cut(s) 146, 374
RsaI GTAC 1 cut(s) 463
RsaNI GTAC 1 cut(s) 462
SacI GAGCTC 2 cut(s) 131, 359
SacII CCGCGG 1 cut(s) 523
Sau3AI GATC 5 cut(s) 78, 159, 187, 415, 429
Sau96I GGNCC 1 cut(s) 234
SchI GAGTC 2 cut(s) 262, 500
ScrFI CCNGG 1 cut(s) 164
SduI GDGCHC 3 cut(s) 131, 285, 359
SetI ASST 8 cut(s) 59, 123, 131, 150, 351, 359, 385, 507
SfaNI GCATC 2 cut(s) 52, 186
Sfr303I CCGCGG 1 cut(s) 523
SgrBI CCGCGG 1 cut(s) 523
SinI GGWCC 1 cut(s) 234
SmlI CTYRAG 2 cut(s) 116, 221
SmoI CTYRAG 2 cut(s) 116, 221
SphI GCATGC 1 cut(s) 304
Sse9I AATT 3 cut(s) 31, 72, 446
SseBI AGGCCT 1 cut(s) 41
SsiI CCGC 4 cut(s) 294, 410, 520, 522
SstI GAGCTC 2 cut(s) 131, 359
StuI AGGCCT 1 cut(s) 41
StyD4I CCNGG 1 cut(s) 162
TaiI ACGT 1 cut(s) 150
TaqI TCGA 2 cut(s) 77, 141
TasI AATT 3 cut(s) 31, 72, 446
TfiI GAWTC 1 cut(s) 388
Tth111I GACNNNGTC 2 cut(s) 146, 374
VpaK11BI GGWCC 1 cut(s) 234
XapI RAATTY 1 cut(s) 31
XceI RCATGY 1 cut(s) 304
XmiI GTMKAC 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.