RchiOBHm_Chr7g0218011

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0018896
Physical Location & Seq
Forward (+)
35931912 .. 35932178
267 bp
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UTR
Exon/CDS
Intron
PRQ19514

Sequence Viewer

Length: 267 bp
ATGCCTGAGAGGTTCCTGGGATTAGACAACCAAATTGATGTTACGGGGAAAAACTTTGAGCTTATTCCATTTGGTGGTGGGAGGAGAATATGTCTTGGACTTCCATTGACAATAAGAATGTTGTACTTGATGTTGGGTTCATTAATTAACAGTTTTGATTGGGAGCTTGAAGATGGAGTTGTACCCGAGACTATGAACATGGAAGATAAGTTTGGCCTCACCTTACAAATGGCTCAGCCTCTGAGAGCTGTGCCCAAGAAGTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

88

Amino Acids

9.95

Weight (kDa)

4.96

Isoelectric Point (pI)

46.63

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 1 - 73 3.6e-13 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018896)

Species Orthologous Gene IDs
malus_domestica MD12G1099300.v1.1 MD16G1115700.v1.1
rosa_chinensis RchiOBHm_Chr1g0346031 RchiOBHm_Chr4g0430061 RchiOBHm_Chr7g0218011
rosa_laevigata RLG00000024131
rosa_roxburghii Rroxscaffold_5G00360940
rosa_rugosa Rorug03G0120100 Rorug03G0120400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 74
AfaI GTAC 2 cut(s) 125, 183
AfiI CCNNNNNNNGG 1 cut(s) 74
AgsI TTSAA 1 cut(s) 170
AjnI CCWGG 1 cut(s) 15
AjuI GAANNNNNNNTTGG 2 cut(s) 195, 227
AluBI AGCT 3 cut(s) 61, 166, 248
AluI AGCT 3 cut(s) 61, 166, 248
Alw26I GTCTC 1 cut(s) 182
AlwNI CAGNNNCTG 1 cut(s) 241
Ama87I CYCGRG 1 cut(s) 185
AoxI GGCC 1 cut(s) 214
AseI ATTAAT 1 cut(s) 143
AsuHPI GGTGA 1 cut(s) 211
AvaI CYCGRG 1 cut(s) 185
BaeGI GKGCMC 1 cut(s) 255
BccI CCATC 1 cut(s) 167
BciT130I CCWGG 1 cut(s) 17
BcoDI GTCTC 1 cut(s) 182
BlpI GCTNAGC 1 cut(s) 234
Bme1390I CCNGG 1 cut(s) 17
BmeT110I CYCGRG 1 cut(s) 185
BmiI GGNNCC 1 cut(s) 14
BmrFI CCNGG 1 cut(s) 17
Bpu1102I GCTNAGC 1 cut(s) 234
BsaJI CCNNGG 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 76, 106
Bsc4I CCNNNNNNNGG 1 cut(s) 74
BseBI CCWGG 1 cut(s) 17
BseDI CCNNGG 1 cut(s) 16
BseLI CCNNNNNNNGG 1 cut(s) 74
BseMII CTCAG 2 cut(s) 233, 248
BseRI GAGGAG 1 cut(s) 97
BseSI GKGCMC 1 cut(s) 255
BshFI GGCC 1 cut(s) 216
BsiHKCI CYCGRG 1 cut(s) 185
BslI CCNNNNNNNGG 1 cut(s) 74
BsmAI GTCTC 1 cut(s) 182
BsnI GGCC 1 cut(s) 216
BsoBI CYCGRG 1 cut(s) 185
Bsp1286I GDGCHC 1 cut(s) 255
Bsp1720I GCTNAGC 1 cut(s) 234
BspANI GGCC 1 cut(s) 216
BspCNI CTCAG 2 cut(s) 234, 247
BspLI GGNNCC 1 cut(s) 14
BssECI CCNNGG 1 cut(s) 16
Bst2UI CCWGG 1 cut(s) 17
Bst4CI ACNGT 1 cut(s) 152
BstDEI CTNAG 3 cut(s) 6, 234, 242
BstMAI GTCTC 1 cut(s) 182
BstNI CCWGG 1 cut(s) 17
BstSCI CCNGG 1 cut(s) 15
BstSLI GKGCMC 1 cut(s) 255
BsuRI GGCC 1 cut(s) 216
CaiI CAGNNNCTG 1 cut(s) 241
Csp6I GTAC 2 cut(s) 124, 182
CviAII CATG 1 cut(s) 199
CviJI RGCY 6 cut(s) 61, 166, 216, 233, 238, 248
CviKI_1 RGCY 6 cut(s) 61, 166, 216, 233, 238, 248
CviQI GTAC 2 cut(s) 124, 182
DdeI CTNAG 3 cut(s) 6, 234, 242
Eco88I CYCGRG 1 cut(s) 185
EcoRII CCWGG 1 cut(s) 15
FaeI CATG 1 cut(s) 202
FaiI YATR 4 cut(s) 91, 194, 200, 265
FatI CATG 1 cut(s) 198
HaeIII GGCC 1 cut(s) 216
Hin1II CATG 1 cut(s) 202
HphI GGTGA 1 cut(s) 211
Hpy188I TCNGA 1 cut(s) 243
HpyCH4III ACNGT 1 cut(s) 152
HpyF3I CTNAG 3 cut(s) 6, 234, 242
Hsp92II CATG 1 cut(s) 202
LmnI GCTCC 1 cut(s) 163
LpnPI CCDG 3 cut(s) 2, 18, 29
MaeIII GTNAC 1 cut(s) 40
MboII GAAGA 2 cut(s) 182, 215
MhlI GDGCHC 1 cut(s) 255
MluCI AATT 2 cut(s) 33, 144
MnlI CCTC 4 cut(s) 3, 75, 227, 249
MseI TTAA 2 cut(s) 143, 147
MspR9I CCNGG 1 cut(s) 17
MvaI CCWGG 1 cut(s) 17
NlaIII CATG 1 cut(s) 202
NlaIV GGNNCC 1 cut(s) 14
PacI TTAATTAA 1 cut(s) 147
PflMI CCANNNNNTGG 1 cut(s) 74
PshBI ATTAAT 1 cut(s) 143
Psp6I CCWGG 1 cut(s) 15
PspGI CCWGG 1 cut(s) 15
PspN4I GGNNCC 1 cut(s) 14
PstNI CAGNNNCTG 1 cut(s) 241
RsaI GTAC 2 cut(s) 125, 183
RsaNI GTAC 2 cut(s) 124, 182
SaqAI TTAA 2 cut(s) 143, 147
ScrFI CCNGG 1 cut(s) 17
SduI GDGCHC 1 cut(s) 255
SetI ASST 5 cut(s) 14, 63, 168, 224, 250
Sse9I AATT 2 cut(s) 33, 144
StyD4I CCNGG 1 cut(s) 15
TaaI ACNGT 1 cut(s) 152
TasI AATT 2 cut(s) 33, 144
TatI WGTACW 1 cut(s) 123
Tru1I TTAA 2 cut(s) 143, 147
Tru9I TTAA 2 cut(s) 143, 147
TspDTI ATGAA 2 cut(s) 129, 209
Van91I CCANNNNNTGG 1 cut(s) 74
VspI ATTAAT 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.