RLG00000024131

Cytochrome p450

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0018896
Physical Location & Seq
Reverse (-)
32253997 .. 32256513
2517 bp
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UTR
Exon/CDS
Intron
RLM00000024131

Sequence Viewer

Length: 429 bp
ATGGAGGAAGAGAAGCTTGAAGCCGGATGTGTTGGAGCGGACGATCTTGTCGAGAGTCCACTCGAAGGCTTTGCGGCTGCTTATGGAGGCATGCGGGTATTTGTGAATGCTTATGCAATTGGAAGAGACCCAGATGTGTGGACTAATGAGCCTGATTCATTTAAGCCTGAGAGGTTCATAGGGTCAAAAATTGATTATAAAGGTCAGCATTATGAGTTGATTCCCTTTGGAGCTGGGAGAAGAATATGTGCAGGTGTGCCATTGGGTCATAGAATGCTGCACCTTACTCTGGGATTATTGCTTCACCAATTCGATTGGGCACTTGGCCGGAATGTTACTATAGAATCAATGAATTGGAATGACAGGCTAGGAATCACAATGAGAAAGTCTGAGCCACTACTAGCAGTGCCTACAAAGTGCTTGGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

143

Amino Acids

15.82

Weight (kDa)

5.54

Isoelectric Point (pI)

31.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 30 - 129 6.2e-24 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018896)

Species Orthologous Gene IDs
malus_domestica MD12G1099300.v1.1 MD16G1115700.v1.1
rosa_chinensis RchiOBHm_Chr1g0346031 RchiOBHm_Chr4g0430061 RchiOBHm_Chr7g0218011
rosa_laevigata RLG00000024131
rosa_roxburghii Rroxscaffold_5G00360940
rosa_rugosa Rorug03G0120100 Rorug03G0120400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 198
AarI CACCTGC 1 cut(s) 242
AasI GACNNNNNNGTC 1 cut(s) 47
Acc36I ACCTGC 1 cut(s) 242
AccBSI CCGCTC 1 cut(s) 38
AciI CCGC 3 cut(s) 38, 74, 94
AcoI YGGCCR 1 cut(s) 325
AfiI CCNNNNNNNGG 2 cut(s) 65, 289
AgsI TTSAA 1 cut(s) 20
AluBI AGCT 2 cut(s) 16, 233
AluI AGCT 2 cut(s) 16, 233
Alw26I GTCTC 1 cut(s) 120
AoxI GGCC 1 cut(s) 325
ApeKI GCWGC 2 cut(s) 77, 277
AsuHPI GGTGA 1 cut(s) 296
BaeGI GKGCMC 1 cut(s) 322
BbvI GCAGC 2 cut(s) 64, 264
BcgI CGANNNNNNTGC 2 cut(s) 53, 87
BcoDI GTCTC 1 cut(s) 120
BfaI CTAG 2 cut(s) 368, 401
BfmI CTRYAG 1 cut(s) 339
BfuAI ACCTGC 1 cut(s) 242
BisI GCNGC 3 cut(s) 75, 78, 278
BlsI GCNGC 3 cut(s) 76, 79, 279
BsaI GGTCTC 1 cut(s) 120
Bsc4I CCNNNNNNNGG 2 cut(s) 65, 289
BseGI GGATG 1 cut(s) 32
BseLI CCNNNNNNNGG 2 cut(s) 65, 289
BseMII CTCAG 2 cut(s) 159, 381
BseSI GKGCMC 1 cut(s) 322
BseXI GCAGC 2 cut(s) 64, 264
BseYI CCCAGC 1 cut(s) 233
BsgI GTGCAG 2 cut(s) 263, 270
BshFI GGCC 1 cut(s) 327
BsiSI CCGG 2 cut(s) 24, 328
BslI CCNNNNNNNGG 2 cut(s) 65, 289
BsmAI GTCTC 1 cut(s) 120
BsmI GAATGC 2 cut(s) 112, 279
BsnI GGCC 1 cut(s) 327
Bso31I GGTCTC 1 cut(s) 120
Bsp1286I GDGCHC 1 cut(s) 322
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 3 cut(s) 38, 74, 94
BspANI GGCC 1 cut(s) 327
BspCNI CTCAG 2 cut(s) 160, 382
BspMI ACCTGC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 120
BsrBI CCGCTC 1 cut(s) 38
BssMI GATC 1 cut(s) 43
Bst6I CTCTTC 2 cut(s) 3, 118
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 2 cut(s) 168, 390
BstF5I GGATG 1 cut(s) 32
BstKTI GATC 1 cut(s) 46
BstMAI GTCTC 1 cut(s) 120
BstMBI GATC 1 cut(s) 43
BstNSI RCATGY 1 cut(s) 94
BstSFI CTRYAG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 322
BstV1I GCAGC 2 cut(s) 64, 264
BstXI CCANNNNNNTGG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 327
BtsCI GGATG 1 cut(s) 32
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 1 cut(s) 411
BveI ACCTGC 1 cut(s) 242
Cac8I GCNNGC 1 cut(s) 92
CviAII CATG 1 cut(s) 91
DdeI CTNAG 2 cut(s) 168, 390
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
DrdI GACNNNNNNGTC 1 cut(s) 47
DseDI GACNNNNNNGTC 1 cut(s) 47
EaeI YGGCCR 1 cut(s) 325
Eam1104I CTCTTC 2 cut(s) 3, 118
EarI CTCTTC 2 cut(s) 3, 118
Eco31I GGTCTC 1 cut(s) 120
FaeI CATG 1 cut(s) 94
FaiI YATR 9 cut(s) 84, 92, 114, 179, 198, 213, 247, 270, 341
FalI AAGNNNNNCTT 1 cut(s) 32
FatI CATG 1 cut(s) 90
FauI CCCGC 1 cut(s) 87
Fnu4HI GCNGC 3 cut(s) 75, 78, 278
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 3 cut(s) 75, 78, 278
FspBI CTAG 2 cut(s) 368, 401
GluI GCNGC 3 cut(s) 75, 78, 278
GsaI CCCAGC 1 cut(s) 237
HaeIII GGCC 1 cut(s) 327
HapII CCGG 2 cut(s) 24, 328
Hin1II CATG 1 cut(s) 94
HindIII AAGCTT 1 cut(s) 14
HinfI GANTC 5 cut(s) 55, 155, 220, 344, 372
HpaII CCGG 2 cut(s) 24, 328
HphI GGTGA 1 cut(s) 296
Hpy166II GTNNAC 2 cut(s) 59, 141
Hpy188I TCNGA 1 cut(s) 391
Hpy188III TCNNGA 1 cut(s) 52
Hpy8I GTNNAC 2 cut(s) 59, 141
HpyAV CCTTC 1 cut(s) 59
HpyCH4V TGCA 3 cut(s) 116, 251, 280
HpyF3I CTNAG 2 cut(s) 168, 390
Hsp92II CATG 1 cut(s) 94
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 2 cut(s) 35, 230
LpnPI CCDG 9 cut(s) 37, 144, 165, 180, 219, 237, 275, 341, 349
Lsp1109I GCAGC 2 cut(s) 64, 264
MaeI CTAG 2 cut(s) 368, 401
MaeIII GTNAC 1 cut(s) 334
MalI GATC 1 cut(s) 45
MbiI CCGCTC 1 cut(s) 38
MboI GATC 1 cut(s) 43
MboII GAAGA 3 cut(s) 20, 135, 252
MfeI CAATTG 1 cut(s) 117
MhlI GDGCHC 1 cut(s) 322
MluCI AATT 4 cut(s) 117, 189, 308, 352
MlyI GAGTC 1 cut(s) 64
MmeI TCCRAC 1 cut(s) 13
MnlI CCTC 2 cut(s) 80, 165
MseI TTAA 1 cut(s) 162
MspI CCGG 2 cut(s) 24, 328
MunI CAATTG 1 cut(s) 117
Mva1269I GAATGC 2 cut(s) 112, 279
NdeII GATC 1 cut(s) 43
NlaIII CATG 1 cut(s) 94
NspI RCATGY 1 cut(s) 94
PaeI GCATGC 1 cut(s) 94
PaqCI CACCTGC 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 48
PctI GAATGC 2 cut(s) 112, 279
PfeI GAWTC 4 cut(s) 155, 220, 344, 372
PkrI GCNGC 3 cut(s) 76, 79, 279
PleI GAGTC 1 cut(s) 63
PpsI GAGTC 1 cut(s) 63
PsiI TTATAA 1 cut(s) 198
PspFI CCCAGC 1 cut(s) 233
SaqAI TTAA 1 cut(s) 162
SatI GCNGC 3 cut(s) 75, 78, 278
Sau3AI GATC 1 cut(s) 43
SchI GAGTC 1 cut(s) 64
SduI GDGCHC 1 cut(s) 322
SetI ASST 6 cut(s) 18, 176, 205, 235, 256, 285
SfcI CTRYAG 1 cut(s) 339
SphI GCATGC 1 cut(s) 94
Sse9I AATT 4 cut(s) 117, 189, 308, 352
SsiI CCGC 3 cut(s) 38, 74, 94
SspMI CTAG 2 cut(s) 368, 401
TaqI TCGA 3 cut(s) 51, 63, 312
TasI AATT 4 cut(s) 117, 189, 308, 352
TauI GCSGC 1 cut(s) 77
TfiI GAWTC 4 cut(s) 155, 220, 344, 372
Tru1I TTAA 1 cut(s) 162
Tru9I TTAA 1 cut(s) 162
TscAI CASTG 1 cut(s) 411
TseI GCWGC 2 cut(s) 77, 277
TspDTI ATGAA 3 cut(s) 147, 166, 365
TspRI CASTG 1 cut(s) 411
XceI RCATGY 1 cut(s) 94
XspI CTAG 2 cut(s) 368, 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.