RchiOBHm_Chr7g0228731

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
52104433 .. 52105312
880 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20490

Sequence Viewer

Length: 336 bp
ATGTTGCTAAGGCTAGAATTGCCCTTCAAGAAATATCTTATACTAGGCCTGTACGTTGTTCCCAGCAGGAGTAGGTCAACTTCAAGGAATAGAGAGTTACTGGAAAAGAAAATAAAGCCTGCTAAAGGCAACAGTTGGCGTCAACGGCAATCATATATGAGTGGTGTTTTCAAGACTAATCACCCTGAATTTGGTGTTTTATTGGAGGATGGATTTGTTGGTCAGCAGGGAATTCAAGCAGGTCCTTTGATGCCGAGTTTGGACAAATACCGGCCACCAGGGAATTCAAGCAGGTCCTTTGATGACTGTGTGTTTACTAGTGGTGATGAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

111

Amino Acids

12.6

Weight (kDa)

9.59

Isoelectric Point (pI)

65.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0018638)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 230, 282
AcoI YGGCCR 1 cut(s) 272
AcsI RAATTY 3 cut(s) 188, 231, 283
AcyI GRCGYC 1 cut(s) 139
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 125, 191
AgsI TTSAA 5 cut(s) 28, 84, 172, 236, 288
AhlI ACTAGT 1 cut(s) 317
AjnI CCWGG 1 cut(s) 277
AoxI GGCC 2 cut(s) 46, 272
ApoI RAATTY 3 cut(s) 188, 231, 283
AspS9I GGNCC 2 cut(s) 242, 294
AsuHPI GGTGA 2 cut(s) 173, 335
AvaII GGWCC 2 cut(s) 242, 294
BarI GAAGNNNNNNTAC 2 cut(s) 64, 96
BccI CCATC 1 cut(s) 203
BceAI ACGGC 1 cut(s) 161
BciT130I CCWGG 1 cut(s) 279
BcuI ACTAGT 1 cut(s) 317
BfaI CTAG 3 cut(s) 14, 44, 318
BfuAI ACCTGC 2 cut(s) 230, 282
Bme1390I CCNGG 1 cut(s) 279
Bme18I GGWCC 2 cut(s) 242, 294
BmgT120I GGNCC 2 cut(s) 242, 294
BmrFI CCNGG 1 cut(s) 279
BmsI GCATC 1 cut(s) 240
Bpu10I CCTNAGC 1 cut(s) 8
BsaHI GRCGYC 1 cut(s) 139
BsaJI CCNNGG 1 cut(s) 278
Bsc4I CCNNNNNNNGG 2 cut(s) 125, 191
Bse118I RCCGGY 1 cut(s) 270
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 279
BseDI CCNNGG 1 cut(s) 278
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 2 cut(s) 125, 191
BseNI ACTGG 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 62
BshFI GGCC 2 cut(s) 48, 274
BsiSI CCGG 1 cut(s) 271
BslI CCNNNNNNNGG 2 cut(s) 125, 191
BsnI GGCC 2 cut(s) 48, 274
BspANI GGCC 2 cut(s) 48, 274
BspMI ACCTGC 2 cut(s) 230, 282
BsrFI RCCGGY 1 cut(s) 270
BsrI ACTGG 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 278
BssNI GRCGYC 1 cut(s) 139
Bst2UI CCWGG 1 cut(s) 279
Bst4CI ACNGT 2 cut(s) 134, 308
BstACI GRCGYC 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 120
BstDEI CTNAG 1 cut(s) 8
BstENI CCTNNNNNAGG 1 cut(s) 123
BstF5I GGATG 1 cut(s) 214
BstMWI GCNNNNNNNGC 2 cut(s) 19, 145
BstNI CCWGG 1 cut(s) 279
BstSCI CCNGG 1 cut(s) 277
BsuRI GGCC 2 cut(s) 48, 274
BtsCI GGATG 1 cut(s) 214
BveI ACCTGC 2 cut(s) 230, 282
Cac8I GCNNGC 1 cut(s) 120
Cfr10I RCCGGY 1 cut(s) 270
Cfr13I GGNCC 2 cut(s) 242, 294
CseI GACGC 1 cut(s) 128
Csp6I GTAC 1 cut(s) 52
CviJI RGCY 4 cut(s) 13, 48, 118, 274
CviKI_1 RGCY 4 cut(s) 13, 48, 118, 274
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 1 cut(s) 8
EaeI YGGCCR 1 cut(s) 272
Eco147I AGGCCT 1 cut(s) 48
Eco47I GGWCC 2 cut(s) 242, 294
EcoNI CCTNNNNNAGG 1 cut(s) 123
EcoO109I RGGNCCY 2 cut(s) 242, 294
EcoRI GAATTC 2 cut(s) 231, 283
EcoRII CCWGG 1 cut(s) 277
FaiI YATR 4 cut(s) 41, 154, 156, 158
FokI GGATG 1 cut(s) 221
FspBI CTAG 3 cut(s) 14, 44, 318
GsaI CCCAGC 1 cut(s) 66
HaeIII GGCC 2 cut(s) 48, 274
HapII CCGG 1 cut(s) 271
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 139
HincII GTYRAC 2 cut(s) 78, 143
HindII GTYRAC 2 cut(s) 78, 143
HpaII CCGG 1 cut(s) 271
HphI GGTGA 2 cut(s) 173, 335
Hpy166II GTNNAC 3 cut(s) 78, 143, 315
Hpy188III TCNNGA 2 cut(s) 28, 172
Hpy8I GTNNAC 3 cut(s) 78, 143, 315
HpyAV CCTTC 1 cut(s) 34
HpyCH4III ACNGT 2 cut(s) 134, 308
HpyCH4IV ACGT 1 cut(s) 54
HpyF10VI GCNNNNNNNGC 2 cut(s) 19, 145
HpyF3I CTNAG 1 cut(s) 8
HpySE526I ACGT 1 cut(s) 54
Hsp92I GRCGYC 1 cut(s) 139
LweI GCATC 1 cut(s) 240
MaeI CTAG 3 cut(s) 14, 44, 318
MaeII ACGT 1 cut(s) 54
MaeIII GTNAC 1 cut(s) 96
MluCI AATT 4 cut(s) 17, 188, 231, 283
MnlI CCTC 1 cut(s) 199
MseI TTAA 1 cut(s) 334
MspI CCGG 1 cut(s) 271
MspR9I CCNGG 1 cut(s) 279
MvaI CCWGG 1 cut(s) 279
MwoI GCNNNNNNNGC 2 cut(s) 19, 145
NmeAIII GCCGAG 1 cut(s) 279
PceI AGGCCT 1 cut(s) 48
PpuMI RGGWCCY 2 cut(s) 242, 294
Psp5II RGGWCCY 2 cut(s) 242, 294
Psp6I CCWGG 1 cut(s) 277
PspFI CCCAGC 1 cut(s) 62
PspGI CCWGG 1 cut(s) 277
PspPI GGNCC 2 cut(s) 242, 294
PspPPI RGGWCCY 2 cut(s) 242, 294
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 334
Sau96I GGNCC 2 cut(s) 242, 294
ScrFI CCNGG 1 cut(s) 279
SetI ASST 4 cut(s) 57, 77, 244, 296
SfaNI GCATC 1 cut(s) 240
SinI GGWCC 2 cut(s) 242, 294
SpeI ACTAGT 1 cut(s) 317
Sse9I AATT 4 cut(s) 17, 188, 231, 283
SseBI AGGCCT 1 cut(s) 48
SspMI CTAG 3 cut(s) 14, 44, 318
StuI AGGCCT 1 cut(s) 48
StyD4I CCNGG 1 cut(s) 277
TaaI ACNGT 2 cut(s) 134, 308
TaiI ACGT 1 cut(s) 57
TasI AATT 4 cut(s) 17, 188, 231, 283
Tru1I TTAA 1 cut(s) 334
Tru9I TTAA 1 cut(s) 334
VpaK11BI GGWCC 2 cut(s) 242, 294
XagI CCTNNNNNAGG 1 cut(s) 123
XapI RAATTY 3 cut(s) 188, 231, 283
XspI CTAG 3 cut(s) 14, 44, 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.