Rroxscaffold_3G00230900

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
15857528 .. 15858117
590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230900.1

Sequence Viewer

Length: 228 bp
ATGGCCTGGGATCGGAGGTCAATTTGGGCCCAATCGAAGTTTCCGGTGCGACCCGGAAACCAGAGAAGAAGATTTTCGTTGGAAGAAAAAACAGACAAAATTCTGACCAAGGATAAAGGTGTGGATGATGCTTCTGCCTCATCTAGTATGACCAATGTTGCTAAGGCTAGAATTGCCCTTCAAGAAATATCTTATACTAGGCCTGTACGTTGTTCCCAGCAGGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

8.63

Weight (kDa)

10.11

Isoelectric Point (pI)

73.02

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018638)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 18
AcsI RAATTY 1 cut(s) 99
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 12
AgsI TTSAA 1 cut(s) 182
AjnI CCWGG 1 cut(s) 5
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AlwI GGATC 1 cut(s) 18
AoxI GGCC 3 cut(s) 3, 27, 200
ApaI GGGCCC 1 cut(s) 31
ApoI RAATTY 1 cut(s) 99
Asp700I GAANNNNTTC 1 cut(s) 73
AspS9I GGNCC 2 cut(s) 27, 28
AsuC2I CCSGG 1 cut(s) 54
BaeGI GKGCMC 1 cut(s) 31
BanII GRGCYC 1 cut(s) 31
BciT130I CCWGG 1 cut(s) 7
BcnI CCSGG 1 cut(s) 54
BfaI CTAG 3 cut(s) 144, 168, 198
Bme1390I CCNGG 2 cut(s) 7, 54
BmgT120I GGNCC 2 cut(s) 27, 28
BmiI GGNNCC 1 cut(s) 29
BmrFI CCNGG 2 cut(s) 7, 54
BmsI GCATC 1 cut(s) 118
Bpu10I CCTNAGC 1 cut(s) 162
BpuMI CCSGG 1 cut(s) 54
BsaJI CCNNGG 2 cut(s) 6, 108
BsaWI WCCGGW 1 cut(s) 43
Bsc4I CCNNNNNNNGG 1 cut(s) 12
BseBI CCWGG 1 cut(s) 7
BseDI CCNNGG 2 cut(s) 6, 108
BseGI GGATG 1 cut(s) 130
BseLI CCNNNNNNNGG 1 cut(s) 12
BseSI GKGCMC 1 cut(s) 31
BseYI CCCAGC 1 cut(s) 216
BshFI GGCC 3 cut(s) 5, 29, 202
BsiSI CCGG 2 cut(s) 44, 54
BslI CCNNNNNNNGG 1 cut(s) 12
BsnI GGCC 3 cut(s) 5, 29, 202
Bsp120I GGGCCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 1 cut(s) 10
BspANI GGCC 3 cut(s) 5, 29, 202
BspLI GGNNCC 1 cut(s) 29
BspPI GGATC 1 cut(s) 18
BssECI CCNNGG 2 cut(s) 6, 108
BssMI GATC 1 cut(s) 10
BssT1I CCWWGG 1 cut(s) 108
Bst2UI CCWGG 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 1 cut(s) 130
BstKTI GATC 1 cut(s) 13
BstMBI GATC 1 cut(s) 10
BstMWI GCNNNNNNNGC 1 cut(s) 173
BstNI CCWGG 1 cut(s) 7
BstSCI CCNGG 2 cut(s) 5, 52
BstSLI GKGCMC 1 cut(s) 31
BsuRI GGCC 3 cut(s) 5, 29, 202
BtsCI GGATG 1 cut(s) 130
Cfr13I GGNCC 2 cut(s) 27, 28
Csp6I GTAC 1 cut(s) 206
CviJI RGCY 4 cut(s) 5, 29, 167, 202
CviKI_1 RGCY 4 cut(s) 5, 29, 167, 202
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 1 cut(s) 162
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eco130I CCWWGG 1 cut(s) 108
Eco147I AGGCCT 1 cut(s) 202
Eco24I GRGCYC 1 cut(s) 31
EcoRII CCWGG 1 cut(s) 5
EcoT14I CCWWGG 1 cut(s) 108
EcoT38I GRGCYC 1 cut(s) 31
ErhI CCWWGG 1 cut(s) 108
FaiI YATR 2 cut(s) 149, 195
FokI GGATG 1 cut(s) 137
FriOI GRGCYC 1 cut(s) 31
FspBI CTAG 3 cut(s) 144, 168, 198
GsaI CCCAGC 1 cut(s) 220
HaeIII GGCC 3 cut(s) 5, 29, 202
HapII CCGG 2 cut(s) 44, 54
HpaII CCGG 2 cut(s) 44, 54
Hpy188I TCNGA 2 cut(s) 15, 105
Hpy188III TCNNGA 1 cut(s) 182
HpyAV CCTTC 1 cut(s) 188
HpyCH4IV ACGT 1 cut(s) 208
HpyF10VI GCNNNNNNNGC 1 cut(s) 173
HpyF3I CTNAG 1 cut(s) 162
HpySE526I ACGT 1 cut(s) 208
Kzo9I GATC 1 cut(s) 10
LpnPI CCDG 6 cut(s) 19, 57, 67, 74, 206, 216
LweI GCATC 1 cut(s) 118
MaeI CTAG 3 cut(s) 144, 168, 198
MaeII ACGT 1 cut(s) 208
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 3 cut(s) 78, 81, 95
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 3 cut(s) 21, 99, 171
MmeI TCCRAC 1 cut(s) 60
MnlI CCTC 2 cut(s) 9, 148
MroXI GAANNNNTTC 1 cut(s) 73
MspI CCGG 2 cut(s) 44, 54
MspR9I CCNGG 2 cut(s) 7, 54
MvaI CCWGG 1 cut(s) 7
MwoI GCNNNNNNNGC 1 cut(s) 173
NciI CCSGG 1 cut(s) 54
NdeII GATC 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 29
PceI AGGCCT 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 73
Psp6I CCWGG 1 cut(s) 5
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 1 cut(s) 5
PspN4I GGNNCC 1 cut(s) 29
PspOMI GGGCCC 1 cut(s) 27
PspPI GGNCC 2 cut(s) 27, 28
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 2 cut(s) 27, 28
ScrFI CCNGG 2 cut(s) 7, 54
SduI GDGCHC 1 cut(s) 31
SetI ASST 3 cut(s) 20, 121, 211
SfaNI GCATC 1 cut(s) 118
Sse9I AATT 3 cut(s) 21, 99, 171
SseBI AGGCCT 1 cut(s) 202
SspMI CTAG 3 cut(s) 144, 168, 198
StuI AGGCCT 1 cut(s) 202
StyD4I CCNGG 2 cut(s) 5, 52
StyI CCWWGG 1 cut(s) 108
TaiI ACGT 1 cut(s) 211
TaqI TCGA 1 cut(s) 35
TasI AATT 3 cut(s) 21, 99, 171
XapI RAATTY 1 cut(s) 99
XmnI GAANNNNTTC 1 cut(s) 73
XspI CTAG 3 cut(s) 144, 168, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.