Rh7BG384500

Oxysterol-binding protein-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0018638
Physical Location & Seq
Forward (+)
41618643 .. 41626440
7798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG384500.1

Sequence Viewer

Length: 450 bp
ATGGCCTGGGATCCGAGGTCAATTTGGGCCCAATCGAAGTTTCCGGTGCGACCCGGAAACCAGAGAAGAAGATTCAAGTACTATTCTCGGTACGCCCATGTTCTTAATTGCAAGCGGACGACGGGGAGCAACGGAGGACTGCCGGAGAAGACCAAAGATAGGCACGCGACGGTAGAGATCAAGACGTCGTCACCTGGATCTAAAGCGATCGTCGCGTATCACGGTCAAATCTTTTGCACCGGTTTGAATTGGTACCAGTCACCGGAGGCGTCGTCGCTGTCGAGGATGCGGAGCTTGCCGGCGAGTTTAGGGACGGTGTTGGTCGGATCTGACGGAAATCCCAAACGGCAGACTCGATATGAGGCCACCGTCGCCGGAGTTTTCCACAGGTGGACCAATTACGACATTCAATTTTGGTTTTCGATTCTGACGGTTTCAATTGGTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Oxysterol_BP PH_11

Protein Analysis

149

Amino Acids

16.83

Weight (kDa)

10.28

Isoelectric Point (pI)

56.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018638)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0228731 RchiOBHm_Chr7g0228741 RchiOBHm_Chr7g0228761
rosa_laevigata RLG00000001545
rosa_multiflora Rmu_sc0004342.1_g000014 Rmu_sc0004342.1_g000015 Rmu_sc0016118.1_g000003
rosa_roxburghii Rroxscaffold_3G00230900
rosa_rugosa Rorug04G0188600
rosa_samantha Rh7BG384500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 188
Acc65I GGTACC 1 cut(s) 252
AccB1I GGYRCC 1 cut(s) 252
AccII CGCG 2 cut(s) 167, 215
AciI CCGC 2 cut(s) 115, 289
AclWI GGATC 4 cut(s) 5, 18, 205, 334
AcyI GRCGYC 2 cut(s) 185, 269
AfaI GTAC 3 cut(s) 80, 92, 254
AfiI CCNNNNNNNGG 2 cut(s) 159, 262
AgeI ACCGGT 1 cut(s) 239
AgsI TTSAA 4 cut(s) 76, 247, 410, 438
AjnI CCWGG 2 cut(s) 5, 193
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 1 cut(s) 294
AluI AGCT 1 cut(s) 294
AlwI GGATC 4 cut(s) 5, 18, 205, 334
AoxI GGCC 3 cut(s) 3, 27, 363
ApaI GGGCCC 1 cut(s) 31
AsiGI ACCGGT 1 cut(s) 239
Asp718I GGTACC 1 cut(s) 252
AspS9I GGNCC 3 cut(s) 27, 28, 393
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 2 cut(s) 183, 252
AvaII GGWCC 1 cut(s) 393
BaeGI GKGCMC 1 cut(s) 31
BamHI GGATCC 1 cut(s) 10
BanI GGYRCC 1 cut(s) 252
BanII GRGCYC 1 cut(s) 31
BbsI GAAGAC 1 cut(s) 155
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 2 cut(s) 7, 195
BcnI CCSGG 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 80
Bme1390I CCNGG 3 cut(s) 7, 54, 195
Bme18I GGWCC 1 cut(s) 393
BmgT120I GGNCC 3 cut(s) 27, 28, 393
BmiI GGNNCC 3 cut(s) 12, 29, 254
BmrFI CCNGG 3 cut(s) 7, 54, 195
BmsI GCATC 1 cut(s) 276
BpiI GAAGAC 1 cut(s) 155
BpuMI CCSGG 1 cut(s) 54
BsaHI GRCGYC 2 cut(s) 185, 269
BsaJI CCNNGG 2 cut(s) 6, 14
BsaWI WCCGGW 3 cut(s) 43, 239, 262
BsaXI ACNNNNNCTCC 2 cut(s) 257, 287
Bsc4I CCNNNNNNNGG 2 cut(s) 159, 262
Bse118I RCCGGY 2 cut(s) 239, 298
Bse1I ACTGG 1 cut(s) 256
BseBI CCWGG 2 cut(s) 7, 195
BseDI CCNNGG 2 cut(s) 6, 14
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 2 cut(s) 159, 262
BseNI ACTGG 1 cut(s) 256
BseSI GKGCMC 1 cut(s) 31
Bsh1236I CGCG 2 cut(s) 167, 215
Bsh1285I CGRYCG 1 cut(s) 210
BshFI GGCC 3 cut(s) 5, 29, 365
BshNI GGYRCC 1 cut(s) 252
BshTI ACCGGT 1 cut(s) 239
BsiEI CGRYCG 1 cut(s) 210
BsiSI CCGG 7 cut(s) 44, 54, 143, 240, 263, 299, 375
BslFI GGGAC 1 cut(s) 325
BslI CCNNNNNNNGG 2 cut(s) 159, 262
BsmFI GGGAC 1 cut(s) 325
BsnI GGCC 3 cut(s) 5, 29, 365
Bsp120I GGGCCC 1 cut(s) 27
Bsp1286I GDGCHC 1 cut(s) 31
Bsp143I GATC 5 cut(s) 10, 177, 197, 207, 326
BspACI CCGC 2 cut(s) 115, 289
BspANI GGCC 3 cut(s) 5, 29, 365
BspFNI CGCG 2 cut(s) 167, 215
BspHI TCATGA 1 cut(s) 446
BspLI GGNNCC 3 cut(s) 12, 29, 254
BspPI GGATC 4 cut(s) 5, 18, 205, 334
BspT107I GGYRCC 1 cut(s) 252
BsrFI RCCGGY 2 cut(s) 239, 298
BsrI ACTGG 1 cut(s) 256
BssAI RCCGGY 2 cut(s) 239, 298
BssECI CCNNGG 2 cut(s) 6, 14
BssMI GATC 5 cut(s) 10, 177, 197, 207, 326
BssNI GRCGYC 2 cut(s) 185, 269
Bst2UI CCWGG 2 cut(s) 7, 195
Bst4CI ACNGT 5 cut(s) 172, 224, 316, 370, 433
BstACI GRCGYC 2 cut(s) 185, 269
BstC8I GCNNGC 4 cut(s) 113, 165, 296, 300
BstF5I GGATG 1 cut(s) 291
BstFNI CGCG 2 cut(s) 167, 215
BstKTI GATC 5 cut(s) 13, 180, 200, 210, 329
BstMBI GATC 5 cut(s) 10, 177, 197, 207, 326
BstMCI CGRYCG 1 cut(s) 210
BstMWI GCNNNNNNNGC 3 cut(s) 212, 295, 371
BstNI CCWGG 2 cut(s) 7, 195
BstSCI CCNGG 3 cut(s) 5, 52, 193
BstSLI GKGCMC 1 cut(s) 31
BstUI CGCG 2 cut(s) 167, 215
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 3 cut(s) 10, 197, 326
BstYI RGATCY 3 cut(s) 10, 197, 326
BsuRI GGCC 3 cut(s) 5, 29, 365
BtsCI GGATG 1 cut(s) 291
Cac8I GCNNGC 4 cut(s) 113, 165, 296, 300
CciI TCATGA 1 cut(s) 446
Cfr10I RCCGGY 2 cut(s) 239, 298
Cfr13I GGNCC 3 cut(s) 27, 28, 393
CseI GACGC 1 cut(s) 258
Csp6I GTAC 3 cut(s) 79, 91, 253
CspAI ACCGGT 1 cut(s) 239
CviAII CATG 2 cut(s) 98, 447
CviJI RGCY 4 cut(s) 5, 29, 294, 365
CviKI_1 RGCY 4 cut(s) 5, 29, 294, 365
CviQI GTAC 3 cut(s) 79, 91, 253
DpnI GATC 5 cut(s) 12, 179, 199, 209, 328
DpnII GATC 5 cut(s) 10, 177, 197, 207, 326
Eco24I GRGCYC 1 cut(s) 31
Eco47I GGWCC 1 cut(s) 393
EcoRII CCWGG 2 cut(s) 5, 193
EcoT38I GRGCYC 1 cut(s) 31
FaeI CATG 2 cut(s) 101, 450
FaiI YATR 3 cut(s) 99, 360, 448
FaqI GGGAC 1 cut(s) 325
FatI CATG 2 cut(s) 97, 446
FokI GGATG 1 cut(s) 298
FriOI GRGCYC 1 cut(s) 31
HaeIII GGCC 3 cut(s) 5, 29, 365
HapII CCGG 7 cut(s) 44, 54, 143, 240, 263, 299, 375
HgaI GACGC 1 cut(s) 258
Hin1I GRCGYC 2 cut(s) 185, 269
Hin1II CATG 2 cut(s) 101, 450
HinfI GANTC 3 cut(s) 72, 352, 424
HpaII CCGG 7 cut(s) 44, 54, 143, 240, 263, 299, 375
HphI GGTGA 2 cut(s) 183, 252
Hpy166II GTNNAC 1 cut(s) 393
Hpy188I TCNGA 4 cut(s) 15, 326, 331, 429
Hpy188III TCNNGA 2 cut(s) 181, 447
Hpy8I GTNNAC 1 cut(s) 393
Hpy99I CGWCG 7 cut(s) 124, 172, 190, 215, 274, 277, 374
HpyCH4III ACNGT 5 cut(s) 172, 224, 316, 370, 433
HpyCH4IV ACGT 1 cut(s) 185
HpyCH4V TGCA 2 cut(s) 111, 237
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 295, 371
HpySE526I ACGT 1 cut(s) 185
Hsp92I GRCGYC 2 cut(s) 185, 269
Hsp92II CATG 2 cut(s) 101, 450
KpnI GGTACC 1 cut(s) 256
KroI GCCGGC 1 cut(s) 298
KroNI GCCGGC 1 cut(s) 300
Kzo9I GATC 5 cut(s) 10, 177, 197, 207, 326
LmnI GCTCC 2 cut(s) 126, 291
LweI GCATC 1 cut(s) 276
MaeII ACGT 1 cut(s) 185
MaeIII GTNAC 2 cut(s) 189, 258
MalI GATC 5 cut(s) 12, 179, 199, 209, 328
MboI GATC 5 cut(s) 10, 177, 197, 207, 326
MboII GAAGA 3 cut(s) 78, 81, 160
MfeI CAATTG 1 cut(s) 438
MflI RGATCY 3 cut(s) 10, 197, 326
MhlI GDGCHC 1 cut(s) 31
MluCI AATT 6 cut(s) 21, 106, 247, 397, 410, 438
MlyI GAGTC 1 cut(s) 346
MmeI TCCRAC 1 cut(s) 304
MnlI CCTC 5 cut(s) 9, 128, 259, 276, 355
MroNI GCCGGC 1 cut(s) 298
MseI TTAA 1 cut(s) 105
MspI CCGG 7 cut(s) 44, 54, 143, 240, 263, 299, 375
MspR9I CCNGG 3 cut(s) 7, 54, 195
MunI CAATTG 1 cut(s) 438
MvaI CCWGG 2 cut(s) 7, 195
MvnI CGCG 2 cut(s) 167, 215
MwoI GCNNNNNNNGC 3 cut(s) 212, 295, 371
NaeI GCCGGC 1 cut(s) 300
NciI CCSGG 1 cut(s) 54
NdeII GATC 5 cut(s) 10, 177, 197, 207, 326
NgoMIV GCCGGC 1 cut(s) 298
NlaIII CATG 2 cut(s) 101, 450
NlaIV GGNNCC 3 cut(s) 12, 29, 254
NmuCI GTSAC 2 cut(s) 189, 258
PagI TCATGA 1 cut(s) 446
PcsI WCGNNNNNNNCGW 2 cut(s) 278, 352
PdiI GCCGGC 1 cut(s) 300
PfeI GAWTC 2 cut(s) 72, 424
PflFI GACNNNGTC 1 cut(s) 187
PinAI ACCGGT 1 cut(s) 239
Ple19I CGATCG 1 cut(s) 210
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
Psp6I CCWGG 2 cut(s) 5, 193
PspGI CCWGG 2 cut(s) 5, 193
PspN4I GGNNCC 3 cut(s) 12, 29, 254
PspOMI GGGCCC 1 cut(s) 27
PspPI GGNCC 3 cut(s) 27, 28, 393
PsuI RGATCY 3 cut(s) 10, 197, 326
PsyI GACNNNGTC 1 cut(s) 187
PvuI CGATCG 1 cut(s) 210
RsaI GTAC 3 cut(s) 80, 92, 254
RsaNI GTAC 3 cut(s) 79, 91, 253
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 5 cut(s) 10, 177, 197, 207, 326
Sau96I GGNCC 3 cut(s) 27, 28, 393
ScaI AGTACT 1 cut(s) 80
SchI GAGTC 1 cut(s) 346
ScrFI CCNGG 3 cut(s) 7, 54, 195
SduI GDGCHC 1 cut(s) 31
SetI ASST 5 cut(s) 20, 188, 196, 296, 392
SfaNI GCATC 1 cut(s) 276
SinI GGWCC 1 cut(s) 393
Sse9I AATT 6 cut(s) 21, 106, 247, 397, 410, 438
SsiI CCGC 2 cut(s) 115, 289
StyD4I CCNGG 3 cut(s) 5, 52, 193
TaaI ACNGT 5 cut(s) 172, 224, 316, 370, 433
TaiI ACGT 1 cut(s) 188
TaqI TCGA 4 cut(s) 35, 281, 355, 422
TasI AATT 6 cut(s) 21, 106, 247, 397, 410, 438
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 2 cut(s) 72, 424
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseFI GTSAC 2 cut(s) 189, 258
Tsp45I GTSAC 2 cut(s) 189, 258
TspDTI ATGAA 1 cut(s) 435
TspGWI ACGGA 2 cut(s) 147, 348
Tth111I GACNNNGTC 1 cut(s) 187
VpaK11BI GGWCC 1 cut(s) 393
ZraI GACGTC 1 cut(s) 186
ZrmI AGTACT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.