RchiOBHm_Chr7g0228741

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
Physical Location & Seq
Forward (+)
52106238 .. 52107345
1108 bp
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UTR
Exon/CDS
Intron
PRQ20491

Sequence Viewer

Length: 150 bp
ATGGGAAGAGACTGGCAGAATCAGTTGCTACTGTTTGACAAAGAATTATTGGGCACGAACTTGGTTCTATTGAACAAGATGGATCCTCAGAAGAATAGTAATATCCGAAAGCTAACAATCTGGGAGATCATACCATTAAGAAAGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

49

Amino Acids

5.93

Weight (kDa)

9.82

Isoelectric Point (pI)

34.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018638)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 77, 90
AgsI TTSAA 1 cut(s) 73
AluBI AGCT 1 cut(s) 112
AluI AGCT 1 cut(s) 112
Alw26I GTCTC 1 cut(s) 3
AlwI GGATC 2 cut(s) 77, 90
BaeGI GKGCMC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 82
BccI CCATC 1 cut(s) 73
BcoDI GTCTC 1 cut(s) 3
BmiI GGNNCC 1 cut(s) 84
Bse1I ACTGG 1 cut(s) 17
BseMII CTCAG 1 cut(s) 101
BseNI ACTGG 1 cut(s) 17
BseSI GKGCMC 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 3
Bsp1286I GDGCHC 1 cut(s) 56
Bsp143I GATC 2 cut(s) 82, 126
BspCNI CTCAG 1 cut(s) 100
BspLI GGNNCC 1 cut(s) 84
BspPI GGATC 2 cut(s) 77, 90
BsrI ACTGG 1 cut(s) 17
BssMI GATC 2 cut(s) 82, 126
Bst4CI ACNGT 1 cut(s) 33
BstDEI CTNAG 1 cut(s) 87
BstKTI GATC 2 cut(s) 85, 129
BstMAI GTCTC 1 cut(s) 3
BstMBI GATC 2 cut(s) 82, 126
BstSLI GKGCMC 1 cut(s) 56
BstX2I RGATCY 1 cut(s) 82
BstYI RGATCY 1 cut(s) 82
CviJI RGCY 1 cut(s) 112
CviKI_1 RGCY 1 cut(s) 112
DdeI CTNAG 1 cut(s) 87
DpnI GATC 2 cut(s) 84, 128
DpnII GATC 2 cut(s) 82, 126
FaiI YATR 1 cut(s) 131
FspEI CC 9 cut(s) 35, 36, 47, 65, 99, 106, 107, 119, 130
HinfI GANTC 1 cut(s) 19
Hpy188I TCNGA 2 cut(s) 90, 107
HpyCH4III ACNGT 1 cut(s) 33
HpyF3I CTNAG 1 cut(s) 87
Kzo9I GATC 2 cut(s) 82, 126
LpnPI CCDG 1 cut(s) 106
MalI GATC 2 cut(s) 84, 128
MboI GATC 2 cut(s) 82, 126
MboII GAAGA 2 cut(s) 18, 103
MflI RGATCY 1 cut(s) 82
MhlI GDGCHC 1 cut(s) 56
MluCI AATT 1 cut(s) 44
MnlI CCTC 1 cut(s) 96
MseI TTAA 1 cut(s) 137
NdeII GATC 2 cut(s) 82, 126
NlaIV GGNNCC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 19
PspN4I GGNNCC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 82
SaqAI TTAA 1 cut(s) 137
Sau3AI GATC 2 cut(s) 82, 126
SduI GDGCHC 1 cut(s) 56
SetI ASST 1 cut(s) 114
SgeI CNNG 5 cut(s) 25, 67, 73, 88, 133
Sse9I AATT 1 cut(s) 44
TaaI ACNGT 1 cut(s) 33
TasI AATT 1 cut(s) 44
TfiI GAWTC 1 cut(s) 19
Tru1I TTAA 1 cut(s) 137
Tru9I TTAA 1 cut(s) 137
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.