RLG00000001545

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018638
Physical Location & Seq
Reverse (-)
17263016 .. 17265495
2480 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001545

Sequence Viewer

Length: 672 bp
ATGGCCTGGGATCCGAGGTCAATTTGGGCCCAATCGAAGTTTCCGGTGCGACCCGGAAACCAGAGAAGAAGATTCAAGTACTGTTCTCGTAAAGCTACAACTAGCCTTGCTGTCTCTACTGGGATTGAATATAGAATTGTGAAAATTTGGAAACAGTTGGAAGAAAAAAACAGAGAAAATTCTGACCCAAGGAGGGAAAGTCCAGATAAAGGAGTAGGTCAACTTCAAGGAATAGAGTTACTGGAAAAGAAAATAAAGCCTGCTAAAGGCAACAGTTCTAAAAGCTTGGCGTCAACGCCAATCATGAGTGGTGTTTTCAAGACTAATCACCCTGAATTTGGTGTTTTATTGGAGGATGGAGTTGTTGGTCAGCAGGGAAGCACGTCCTTTGATGCCGAGTTTGGACAAATACCACCAGGGAAGCAGACCATAGAAGAGTCTGAGGGCTCATCCAAGTCAGGTACCTTAGCCCTGTTACCAGCCAATCCCTCTGTTCATGCAGAAACTTTGCAAATCCTGGGAAGAAACTGGCAGAATCAGTTGCTACTGAGCAGATTTGACAAAGAATTATTGGGCACGAACTTGGTTCTATTGAACAAGGTGGATCCTCAGAAGAACAGTAATATCCGAAAGCTAACAATCTGGGAGATCATACCATTAAGAAAGTGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

25.05

Weight (kDa)

9.84

Isoelectric Point (pI)

48.03

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018638)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr7g0228731 RchiOBHm_Chr7g0228741 RchiOBHm_Chr7g0228761
rosa_laevigata RLG00000001545
rosa_multiflora Rmu_sc0004342.1_g000014 Rmu_sc0004342.1_g000015 Rmu_sc0016118.1_g000003
rosa_roxburghii Rroxscaffold_3G00230900
rosa_rugosa Rorug04G0188600
rosa_samantha Rh7BG384500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 461
AccB1I GGYRCC 1 cut(s) 461
AclWI GGATC 4 cut(s) 5, 18, 599, 612
AcsI RAATTY 3 cut(s) 144, 178, 335
AcyI GRCGYC 1 cut(s) 290
AfaI GTAC 2 cut(s) 80, 463
AfiI CCNNNNNNNGG 4 cut(s) 193, 209, 266, 338
AgsI TTSAA 5 cut(s) 76, 128, 227, 319, 595
AjiI CACGTC 1 cut(s) 384
AjnI CCWGG 3 cut(s) 5, 415, 516
AjuI GAANNNNNNNTTGG 2 cut(s) 24, 56
AluBI AGCT 3 cut(s) 95, 285, 634
AluI AGCT 3 cut(s) 95, 285, 634
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 4 cut(s) 5, 18, 599, 612
AoxI GGCC 2 cut(s) 3, 27
ApaI GGGCCC 1 cut(s) 31
ApoI RAATTY 3 cut(s) 144, 178, 335
Asp718I GGTACC 1 cut(s) 461
AspS9I GGNCC 2 cut(s) 27, 28
AsuC2I CCSGG 1 cut(s) 54
AsuHPI GGTGA 1 cut(s) 320
BaeGI GKGCMC 2 cut(s) 31, 578
BamHI GGATCC 2 cut(s) 10, 604
BanI GGYRCC 1 cut(s) 461
BanII GRGCYC 2 cut(s) 31, 449
BarI GAAGNNNNNNTAC 2 cut(s) 207, 239
BccI CCATC 1 cut(s) 350
BciT130I CCWGG 3 cut(s) 7, 417, 518
BcnI CCSGG 1 cut(s) 54
BcoDI GTCTC 1 cut(s) 118
BfaI CTAG 1 cut(s) 102
BmcAI AGTACT 1 cut(s) 80
Bme1390I CCNGG 4 cut(s) 7, 54, 417, 518
BmgBI CACGTC 1 cut(s) 384
BmgT120I GGNCC 2 cut(s) 27, 28
BmiI GGNNCC 4 cut(s) 12, 29, 463, 606
BmrFI CCNGG 4 cut(s) 7, 54, 417, 518
BmrI ACTGGG 1 cut(s) 129
BmsI GCATC 1 cut(s) 382
BmuI ACTGGG 1 cut(s) 129
Bpu10I CCTNAGC 1 cut(s) 466
BpuMI CCSGG 1 cut(s) 54
BsaHI GRCGYC 1 cut(s) 290
BsaJI CCNNGG 5 cut(s) 6, 14, 188, 416, 517
BsaWI WCCGGW 1 cut(s) 43
BsaXI ACNNNNNCTCC 2 cut(s) 184, 214
Bsc4I CCNNNNNNNGG 4 cut(s) 193, 209, 266, 338
Bse1I ACTGG 3 cut(s) 124, 246, 533
BseBI CCWGG 3 cut(s) 7, 417, 518
BseDI CCNNGG 5 cut(s) 6, 14, 188, 416, 517
BseGI GGATG 2 cut(s) 361, 449
BseLI CCNNNNNNNGG 4 cut(s) 193, 209, 266, 338
BseMII CTCAG 3 cut(s) 432, 539, 623
BseNI ACTGG 3 cut(s) 124, 246, 533
BseSI GKGCMC 2 cut(s) 31, 578
BshFI GGCC 2 cut(s) 5, 29
BshNI GGYRCC 1 cut(s) 461
BsiSI CCGG 2 cut(s) 44, 54
BslI CCNNNNNNNGG 4 cut(s) 193, 209, 266, 338
BsmAI GTCTC 1 cut(s) 118
BsnI GGCC 2 cut(s) 5, 29
Bsp120I GGGCCC 1 cut(s) 27
Bsp1286I GDGCHC 3 cut(s) 31, 449, 578
Bsp143I GATC 3 cut(s) 10, 604, 648
BspANI GGCC 2 cut(s) 5, 29
BspCNI CTCAG 3 cut(s) 433, 540, 622
BspHI TCATGA 1 cut(s) 303
BspLI GGNNCC 4 cut(s) 12, 29, 463, 606
BspPI GGATC 4 cut(s) 5, 18, 599, 612
BspT107I GGYRCC 1 cut(s) 461
BsrI ACTGG 3 cut(s) 124, 246, 533
BssECI CCNNGG 5 cut(s) 6, 14, 188, 416, 517
BssMI GATC 3 cut(s) 10, 604, 648
BssNI GRCGYC 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 188
Bst2UI CCWGG 3 cut(s) 7, 417, 518
Bst4CI ACNGT 4 cut(s) 83, 156, 275, 620
Bst6I CTCTTC 1 cut(s) 429
BstACI GRCGYC 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 261
BstDEI CTNAG 4 cut(s) 441, 466, 548, 609
BstENI CCTNNNNNAGG 1 cut(s) 264
BstF5I GGATG 2 cut(s) 361, 449
BstKTI GATC 3 cut(s) 13, 607, 651
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 3 cut(s) 10, 604, 648
BstNI CCWGG 3 cut(s) 7, 417, 518
BstSCI CCNGG 4 cut(s) 5, 52, 415, 516
BstSLI GKGCMC 2 cut(s) 31, 578
BstX2I RGATCY 2 cut(s) 10, 604
BstYI RGATCY 2 cut(s) 10, 604
BsuRI GGCC 2 cut(s) 5, 29
BtrI CACGTC 1 cut(s) 384
BtsCI GGATG 2 cut(s) 361, 449
Cac8I GCNNGC 1 cut(s) 261
CciI TCATGA 1 cut(s) 303
Cfr13I GGNCC 2 cut(s) 27, 28
CseI GACGC 1 cut(s) 279
Csp6I GTAC 2 cut(s) 79, 462
CviAII CATG 2 cut(s) 304, 497
CviQI GTAC 2 cut(s) 79, 462
DdeI CTNAG 4 cut(s) 441, 466, 548, 609
DpnI GATC 3 cut(s) 12, 606, 650
DpnII GATC 3 cut(s) 10, 604, 648
Eam1104I CTCTTC 1 cut(s) 429
EarI CTCTTC 1 cut(s) 429
Eco130I CCWWGG 1 cut(s) 188
Eco24I GRGCYC 2 cut(s) 31, 449
EcoNI CCTNNNNNAGG 1 cut(s) 264
EcoRII CCWGG 3 cut(s) 5, 415, 516
EcoT14I CCWWGG 1 cut(s) 188
EcoT38I GRGCYC 2 cut(s) 31, 449
ErhI CCWWGG 1 cut(s) 188
FaeI CATG 2 cut(s) 307, 500
FaiI YATR 5 cut(s) 132, 305, 431, 498, 653
FatI CATG 2 cut(s) 303, 496
FokI GGATG 2 cut(s) 368, 436
FriOI GRGCYC 2 cut(s) 31, 449
FspBI CTAG 1 cut(s) 102
HaeIII GGCC 2 cut(s) 5, 29
HapII CCGG 2 cut(s) 44, 54
HgaI GACGC 1 cut(s) 279
Hin1I GRCGYC 1 cut(s) 290
Hin1II CATG 2 cut(s) 307, 500
HincII GTYRAC 2 cut(s) 221, 294
HindII GTYRAC 2 cut(s) 221, 294
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 3 cut(s) 72, 437, 535
HpaII CCGG 2 cut(s) 44, 54
HphI GGTGA 1 cut(s) 320
Hpy166II GTNNAC 2 cut(s) 221, 294
Hpy188I TCNGA 5 cut(s) 15, 184, 442, 612, 629
Hpy188III TCNNGA 3 cut(s) 203, 304, 319
Hpy8I GTNNAC 2 cut(s) 221, 294
HpyCH4III ACNGT 4 cut(s) 83, 156, 275, 620
HpyCH4IV ACGT 1 cut(s) 383
HpyCH4V TGCA 2 cut(s) 500, 511
HpyF3I CTNAG 4 cut(s) 441, 466, 548, 609
HpySE526I ACGT 1 cut(s) 383
Hsp92I GRCGYC 1 cut(s) 290
Hsp92II CATG 2 cut(s) 307, 500
KpnI GGTACC 1 cut(s) 465
Kzo9I GATC 3 cut(s) 10, 604, 648
LweI GCATC 1 cut(s) 382
MaeI CTAG 1 cut(s) 102
MaeII ACGT 1 cut(s) 383
MaeIII GTNAC 2 cut(s) 237, 474
MalI GATC 3 cut(s) 12, 606, 650
MboI GATC 3 cut(s) 10, 604, 648
MboII GAAGA 6 cut(s) 78, 81, 173, 446, 534, 625
MflI RGATCY 2 cut(s) 10, 604
MhlI GDGCHC 3 cut(s) 31, 449, 578
MluCI AATT 6 cut(s) 21, 135, 144, 178, 335, 566
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 138
MnlI CCTC 6 cut(s) 9, 186, 346, 436, 499, 618
MseI TTAA 1 cut(s) 659
MspI CCGG 2 cut(s) 44, 54
MspR9I CCNGG 4 cut(s) 7, 54, 417, 518
MvaI CCWGG 3 cut(s) 7, 417, 518
NciI CCSGG 1 cut(s) 54
NdeII GATC 3 cut(s) 10, 604, 648
NlaIII CATG 2 cut(s) 307, 500
NlaIV GGNNCC 4 cut(s) 12, 29, 463, 606
NmeAIII GCCGAG 1 cut(s) 421
PagI TCATGA 1 cut(s) 303
PfeI GAWTC 2 cut(s) 72, 535
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
Psp6I CCWGG 3 cut(s) 5, 415, 516
PspGI CCWGG 3 cut(s) 5, 415, 516
PspN4I GGNNCC 4 cut(s) 12, 29, 463, 606
PspOMI GGGCCC 1 cut(s) 27
PspPI GGNCC 2 cut(s) 27, 28
PsuI RGATCY 2 cut(s) 10, 604
RsaI GTAC 2 cut(s) 80, 463
RsaNI GTAC 2 cut(s) 79, 462
SaqAI TTAA 1 cut(s) 659
Sau3AI GATC 3 cut(s) 10, 604, 648
Sau96I GGNCC 2 cut(s) 27, 28
ScaI AGTACT 1 cut(s) 80
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 4 cut(s) 7, 54, 417, 518
SduI GDGCHC 3 cut(s) 31, 449, 578
SetI ASST 9 cut(s) 20, 97, 220, 287, 386, 463, 467, 603, 636
SfaNI GCATC 1 cut(s) 382
Sse9I AATT 6 cut(s) 21, 135, 144, 178, 335, 566
SspMI CTAG 1 cut(s) 102
StyD4I CCNGG 4 cut(s) 5, 52, 415, 516
StyI CCWWGG 1 cut(s) 188
TaaI ACNGT 4 cut(s) 83, 156, 275, 620
TaiI ACGT 1 cut(s) 386
TaqI TCGA 1 cut(s) 35
TasI AATT 6 cut(s) 21, 135, 144, 178, 335, 566
TatI WGTACW 1 cut(s) 78
TfiI GAWTC 2 cut(s) 72, 535
Tru1I TTAA 1 cut(s) 659
Tru9I TTAA 1 cut(s) 659
TspDTI ATGAA 1 cut(s) 485
XagI CCTNNNNNAGG 1 cut(s) 264
XapI RAATTY 3 cut(s) 144, 178, 335
XcmI CCANNNNNNNNNTGG 1 cut(s) 663
XspI CTAG 1 cut(s) 102
ZrmI AGTACT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.