Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0018211

Physical Location & Seq

Genomic Coordinates Forward (+)

52605815 .. 52606187

Gene Structure 373 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ20529

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGCAGCTTGAGTTAAAGATGAGAGTGAATACCATGGCGCTTGAACAAAAGTTAGCAGATGAACATGCTGCACGACTAAGATCTGAACTGCAGATTGCCCGAGAGGCTCAACAAAGGTCTGAAAAAGAGAGATACGATCTGCAAGTAGAGAAGCGGATATGTGACGGAAATGGCAGAGGCCGCATAGGCCTCGGAGACATTTGTCCTATTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1

Protein Analysis

71

Amino Acids

8.19

Weight (kDa)

7.81

Isoelectric Point (pI)

52.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018211)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229181
rosa_laevigata	RLG00000001750
rosa_multiflora	Rmu_co8290967.1_g000001 Rmu_co8475629.1_g000002 Rmu_sc0000693.1_g000013 Rmu_sc0007720.1_g000003 Rmu_sc0007720.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230680 Rroxscaffold_3G00230690
rosa_samantha	Rh7DG402200
rosa_wichuraiana	Rw7G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	154, 181
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw26I	GTCTC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	99
AoxI	GGCC	2 cut(s)	178, 187
ApeKI	GCWGC	2 cut(s)	4, 68
AspLEI	GCGC	1 cut(s)	40
AvaI	CYCGRG	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	16, 55
BcgI	CGANNNNNNTGC	2 cut(s)	172, 206
BcoDI	GTCTC	1 cut(s)	189
BfmI	CTRYAG	1 cut(s)	89
BfoI	RGCGCY	1 cut(s)	41
BglI	GCCNNNNNGGC	2 cut(s)	104, 186
BglII	AGATCT	1 cut(s)	80
BisI	GCNGC	3 cut(s)	5, 69, 181
BlsI	GCNGC	3 cut(s)	6, 70, 182
BmeT110I	CYCGRG	1 cut(s)	99
BoxI	GACNNNNGTC	1 cut(s)	201
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	2 cut(s)	33, 190
BseDI	CCNNGG	2 cut(s)	33, 190
BseXI	GCAGC	2 cut(s)	16, 55
BsgI	GTGCAG	1 cut(s)	54
BshFI	GGCC	2 cut(s)	180, 189
BsiHKCI	CYCGRG	1 cut(s)	99
BsmAI	GTCTC	1 cut(s)	189
BsnI	GGCC	2 cut(s)	180, 189
BsoBI	CYCGRG	1 cut(s)	99
Bsp143I	GATC	2 cut(s)	80, 136
Bsp19I	CCATGG	1 cut(s)	33
BspACI	CCGC	2 cut(s)	154, 181
BspANI	GGCC	2 cut(s)	180, 189
BspMAI	CTGCAG	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	33, 190
BssMI	GATC	2 cut(s)	80, 136
BssT1I	CCWWGG	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	77
BstDSI	CCRYGG	1 cut(s)	33
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	1 cut(s)	40
BstKTI	GATC	2 cut(s)	83, 139
BstMAI	GTCTC	1 cut(s)	189
BstMBI	GATC	2 cut(s)	80, 136
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 180, 186
BstNSI	RCATGY	1 cut(s)	68
BstPAI	GACNNNNGTC	1 cut(s)	201
BstSFI	CTRYAG	1 cut(s)	89
BstV1I	GCAGC	2 cut(s)	16, 55
BstX2I	RGATCY	1 cut(s)	80
BstYI	RGATCY	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	180, 189
BtgI	CCRYGG	1 cut(s)	33
CfoI	GCGC	1 cut(s)	40
CviAII	CATG	2 cut(s)	34, 65
CviJI	RGCY	4 cut(s)	7, 107, 180, 189
CviKI_1	RGCY	4 cut(s)	7, 107, 180, 189
DdeI	CTNAG	1 cut(s)	77
DpnI	GATC	2 cut(s)	82, 138
DpnII	GATC	2 cut(s)	80, 136
Eco130I	CCWWGG	1 cut(s)	33
Eco147I	AGGCCT	1 cut(s)	189
Eco88I	CYCGRG	1 cut(s)	99
EcoT14I	CCWWGG	1 cut(s)	33
ErhI	CCWWGG	1 cut(s)	33
FaeI	CATG	2 cut(s)	37, 68
FaiI	YATR	4 cut(s)	35, 66, 160, 185
FatI	CATG	2 cut(s)	33, 64
Fnu4HI	GCNGC	3 cut(s)	5, 69, 181
Fsp4HI	GCNGC	3 cut(s)	5, 69, 181
GlaI	GCGC	1 cut(s)	39
GluI	GCNGC	3 cut(s)	5, 69, 181
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	2 cut(s)	180, 189
HhaI	GCGC	1 cut(s)	40
Hin1II	CATG	2 cut(s)	37, 68
Hin6I	GCGC	1 cut(s)	38
HinP1I	GCGC	1 cut(s)	38
Hpy188I	TCNGA	3 cut(s)	85, 121, 194
HpyCH4V	TGCA	4 cut(s)	4, 71, 91, 142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 180, 186
HpyF3I	CTNAG	1 cut(s)	77
Hsp92II	CATG	2 cut(s)	37, 68
HspAI	GCGC	1 cut(s)	38
Kzo9I	GATC	2 cut(s)	80, 136
Lsp1109I	GCAGC	2 cut(s)	16, 55
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	2 cut(s)	82, 138
MboI	GATC	2 cut(s)	80, 136
MflI	RGATCY	1 cut(s)	80
MnlI	CCTC	3 cut(s)	97, 170, 200
MseI	TTAA	2 cut(s)	14, 214
MwoI	GCNNNNNNNGC	3 cut(s)	104, 180, 186
NcoI	CCATGG	1 cut(s)	33
NdeII	GATC	2 cut(s)	80, 136
NlaIII	CATG	2 cut(s)	37, 68
NmuCI	GTSAC	1 cut(s)	161
NspI	RCATGY	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	189
PkrI	GCNGC	3 cut(s)	6, 70, 182
PshAI	GACNNNNGTC	1 cut(s)	201
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	80
SaqAI	TTAA	2 cut(s)	14, 214
SatI	GCNGC	3 cut(s)	5, 69, 181
Sau3AI	GATC	2 cut(s)	80, 136
SetI	ASST	2 cut(s)	9, 119
SfcI	CTRYAG	1 cut(s)	89
SfiI	GGCCNNNNNGGCC	1 cut(s)	186
SgeI	CNNG	9 cut(s)	20, 46, 53, 77, 84, 111, 113, 155, 203
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SseBI	AGGCCT	1 cut(s)	189
SsiI	CCGC	2 cut(s)	154, 181
StuI	AGGCCT	1 cut(s)	189
StyI	CCWWGG	1 cut(s)	33
TauI	GCSGC	1 cut(s)	183
Tru1I	TTAA	2 cut(s)	14, 214
Tru9I	TTAA	2 cut(s)	14, 214
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	2 cut(s)	4, 68
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	75
TspGWI	ACGGA	1 cut(s)	180
XceI	RCATGY	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.