Rroxscaffold_3G00230690

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Reverse (-)
15601918 .. 15602663
746 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230690.1

Sequence Viewer

Length: 447 bp
ATGCGAAAAAGAGCCGAAGAGACTGCAGAGTTGCTGAAAAAAGCTGAAGAGACTGCCCAAGAGGCTCAACAAAGGTCCGAGGATGAAATCCGAAAGCTTAGAGATGATCTGCAAGCGAGACGCGAAAAAGAGCCAAAGAGACGCCCAAGAGGCTCAACAAAGCGAGAAGAGACTGCGAGAGATGCGAAAAGAGCAGAAGAGAGTGCCCAAGAGGCTCAACAAAGGTCCGAGGATGAAATCCAAAAGCTTAGAGATGATCGCAAGCGAGAGGTGAGGAAAAGAGCCGAAGAGACTGCGAGAGATGCGAAAAAGAGCCGAAGAGACTGCAGAGATGCGAAAAAGAGCCGAAGAGATCGCCAAGAGGCTCAACAAAGGTCCGAGGATGAAATTCAAAAGCTTAGAGACGATTTGCAAGCGGAGATACGGAAAAGAGTGAAGAGACTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

148

Amino Acids

17.91

Weight (kDa)

9.98

Isoelectric Point (pI)

94.79

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 123
AciI CCGC 1 cut(s) 416
AcsI RAATTY 1 cut(s) 387
AcuI CTGAAG 1 cut(s) 66
AcyI GRCGYC 1 cut(s) 142
AgsI TTSAA 1 cut(s) 392
AluBI AGCT 4 cut(s) 44, 97, 247, 397
AluI AGCT 4 cut(s) 44, 97, 247, 397
Alw26I GTCTC 9 cut(s) 14, 44, 112, 133, 164, 284, 315, 396, 433
ApoI RAATTY 1 cut(s) 387
AspS9I GGNCC 3 cut(s) 75, 225, 375
AsuHPI GGTGA 1 cut(s) 283
AvaII GGWCC 3 cut(s) 75, 225, 375
BaeGI GKGCMC 1 cut(s) 208
BcgI CGANNNNNNTGC 6 cut(s) 5, 39, 275, 306, 309, 340
BcoDI GTCTC 9 cut(s) 14, 44, 112, 133, 164, 284, 315, 396, 433
BfmI CTRYAG 3 cut(s) 24, 325, 443
BglI GCCNNNNNGGC 3 cut(s) 62, 150, 212
Bme18I GGWCC 3 cut(s) 75, 225, 375
BmgT120I GGNCC 3 cut(s) 75, 225, 375
BmsI GCATC 3 cut(s) 172, 292, 322
BsaHI GRCGYC 1 cut(s) 142
BsaJI CCNNGG 3 cut(s) 78, 228, 378
BseDI CCNNGG 3 cut(s) 78, 228, 378
BseGI GGATG 3 cut(s) 88, 238, 388
BseSI GKGCMC 1 cut(s) 208
Bsh1236I CGCG 1 cut(s) 123
BsmAI GTCTC 9 cut(s) 14, 44, 112, 133, 164, 284, 315, 396, 433
BsmBI CGTCTC 3 cut(s) 112, 133, 396
Bsp1286I GDGCHC 1 cut(s) 208
Bsp143I GATC 3 cut(s) 106, 256, 352
BspACI CCGC 1 cut(s) 416
BspFNI CGCG 1 cut(s) 123
BspMAI CTGCAG 2 cut(s) 28, 329
BssECI CCNNGG 3 cut(s) 78, 228, 378
BssMI GATC 3 cut(s) 106, 256, 352
BssNI GRCGYC 1 cut(s) 142
Bst6I CTCTTC 8 cut(s) 12, 42, 162, 192, 282, 313, 343, 431
BstACI GRCGYC 1 cut(s) 142
BstC8I GCNNGC 3 cut(s) 114, 263, 414
BstDEI CTNAG 3 cut(s) 98, 248, 398
BstF5I GGATG 3 cut(s) 88, 238, 388
BstFNI CGCG 1 cut(s) 123
BstKTI GATC 3 cut(s) 109, 259, 355
BstMAI GTCTC 9 cut(s) 14, 44, 112, 133, 164, 284, 315, 396, 433
BstMBI GATC 3 cut(s) 106, 256, 352
BstMWI GCNNNNNNNGC 6 cut(s) 62, 150, 182, 191, 212, 302
BstSFI CTRYAG 3 cut(s) 24, 325, 443
BstSLI GKGCMC 1 cut(s) 208
BstUI CGCG 1 cut(s) 123
BtsCI GGATG 3 cut(s) 88, 238, 388
Cac8I GCNNGC 3 cut(s) 114, 263, 414
Cfr13I GGNCC 3 cut(s) 75, 225, 375
CseI GACGC 2 cut(s) 129, 150
DdeI CTNAG 3 cut(s) 98, 248, 398
DpnI GATC 3 cut(s) 108, 258, 354
DpnII GATC 3 cut(s) 106, 256, 352
Eam1104I CTCTTC 8 cut(s) 12, 42, 162, 192, 282, 313, 343, 431
EarI CTCTTC 8 cut(s) 12, 42, 162, 192, 282, 313, 343, 431
Eco47I GGWCC 3 cut(s) 75, 225, 375
Eco57I CTGAAG 1 cut(s) 66
Esp3I CGTCTC 3 cut(s) 112, 133, 396
FaiI YATR 1 cut(s) 445
FokI GGATG 3 cut(s) 95, 245, 395
HgaI GACGC 2 cut(s) 129, 150
Hin1I GRCGYC 1 cut(s) 142
HindIII AAGCTT 3 cut(s) 95, 245, 395
HphI GGTGA 1 cut(s) 283
Hpy188I TCNGA 4 cut(s) 79, 92, 229, 379
HpyCH4V TGCA 4 cut(s) 26, 112, 327, 412
HpyF10VI GCNNNNNNNGC 6 cut(s) 62, 150, 182, 191, 212, 302
HpyF3I CTNAG 3 cut(s) 98, 248, 398
Hsp92I GRCGYC 1 cut(s) 142
Kzo9I GATC 3 cut(s) 106, 256, 352
LweI GCATC 3 cut(s) 172, 292, 322
MalI GATC 3 cut(s) 108, 258, 354
MboI GATC 3 cut(s) 106, 256, 352
MboII GAAGA 7 cut(s) 29, 59, 179, 209, 299, 330, 360
MhlI GDGCHC 1 cut(s) 208
MluCI AATT 1 cut(s) 387
MnlI CCTC 9 cut(s) 55, 73, 143, 205, 223, 262, 267, 355, 373
MvnI CGCG 1 cut(s) 123
MwoI GCNNNNNNNGC 6 cut(s) 62, 150, 182, 191, 212, 302
NdeII GATC 3 cut(s) 106, 256, 352
PspPI GGNCC 3 cut(s) 75, 225, 375
PstI CTGCAG 2 cut(s) 28, 329
Sau3AI GATC 3 cut(s) 106, 256, 352
Sau96I GGNCC 3 cut(s) 75, 225, 375
SduI GDGCHC 1 cut(s) 208
SetI ASST 8 cut(s) 46, 77, 99, 227, 249, 273, 377, 399
SfaNI GCATC 3 cut(s) 172, 292, 322
SfcI CTRYAG 3 cut(s) 24, 325, 443
SinI GGWCC 3 cut(s) 75, 225, 375
Sse9I AATT 1 cut(s) 387
SsiI CCGC 1 cut(s) 416
TasI AATT 1 cut(s) 387
TspDTI ATGAA 3 cut(s) 99, 249, 399
TspGWI ACGGA 1 cut(s) 439
VpaK11BI GGWCC 3 cut(s) 75, 225, 375
XapI RAATTY 1 cut(s) 387
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.