Rmu_sc0000693.1_g000013
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000693.1
OG0018211
Physical Location & Seq
Forward (+)
51589 .. 56091
4503 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000693.1_g000013.1.cds

Sequence Viewer

Length: 654 bp
atgaaacttcgtgatcaacaagaagatgttgcttcgaaggggtattcaaaacaagaaatatctcatttgaatgagcagatgcagcatgcacatgatctgcagcttaaacgaattactgagatgattgagtcaaagatgagagagaaaaccatgatgcttgaacaaaatttagcagatgaacatgctgcacgactaagagcagaagagactgcacgaaaggctcaacaaagttctcaggatgaaatccgaaagcttagaggctatctagaagcagagaggcggcggacaccgaaaccagagagaatctgtgctattatgatgagggatgacgagggagaagacttcaactgtgctctgtttgcagcagcccctgctgccctgcgcgctgcacctacagccacacgcccctgcgtcgctggcctgcagccccgcgcccctgcgcacgctgctgcttgtccacacgcccgcgcgcctgcagccctgcatcactgcccctgcatctcggtcgtgcccctgctgcccctacagcgcacctacatcagcagctccttttctcacctactgcaactcgttgccgctacaatatcattgcagccccaatccgacaccgctgcaaaccttcgctccatcacgcctgcatcgacacgcgcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

217

Amino Acids

24.11

Weight (kDa)

8.8

Isoelectric Point (pI)

64.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 441
AccII CGCG 6 cut(s) 384, 432, 468, 470, 648, 650
AciI CCGC 6 cut(s) 280, 283, 430, 466, 576, 609
AcsI RAATTY 1 cut(s) 166
AgsI TTSAA 4 cut(s) 48, 70, 161, 346
AleI CACNNNNGTG 1 cut(s) 649
AluBI AGCT 3 cut(s) 103, 253, 546
AluI AGCT 3 cut(s) 103, 253, 546
Alw21I GWGCWC 1 cut(s) 355
Alw26I GTCTC 1 cut(s) 200
AlwNI CAGNNNCTG 1 cut(s) 371
AoxI GGCC 1 cut(s) 418
ApoI RAATTY 1 cut(s) 166
AspLEI GCGC 8 cut(s) 384, 386, 434, 442, 470, 472, 531, 650
AsuHPI GGTGA 1 cut(s) 548
AsuII TTCGAA 1 cut(s) 35
BaeGI GKGCMC 1 cut(s) 513
BbsI GAAGAC 1 cut(s) 345
Bbv12I GWGCWC 1 cut(s) 355
BccI CCATC 1 cut(s) 635
BcgI CGANNNNNNTGC 4 cut(s) 487, 521, 593, 627
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 5 cut(s) 98, 393, 422, 474, 524
BmsI GCATC 5 cut(s) 69, 144, 493, 507, 647
BpiI GAAGAC 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 35
BsaXI ACNNNNNCTCC 2 cut(s) 608, 638
Bse3DI GCAATG 1 cut(s) 587
BseGI GGATG 2 cut(s) 244, 331
BseMI GCAATG 1 cut(s) 587
BseMII CTCAG 2 cut(s) 108, 248
BsePI GCGCGC 2 cut(s) 382, 468
BseSI GKGCMC 1 cut(s) 513
BsgI GTGCAG 3 cut(s) 171, 195, 372
Bsh1236I CGCG 6 cut(s) 384, 432, 468, 470, 648, 650
Bsh1285I CGRYCG 1 cut(s) 507
BshFI GGCC 1 cut(s) 420
BsiEI CGRYCG 1 cut(s) 507
BsiHKAI GWGCWC 1 cut(s) 355
BsmAI GTCTC 1 cut(s) 200
BsnI GGCC 1 cut(s) 420
Bsp119I TTCGAA 1 cut(s) 35
Bsp1286I GDGCHC 2 cut(s) 355, 513
Bsp143I GATC 2 cut(s) 13, 94
BspACI CCGC 6 cut(s) 280, 283, 430, 466, 576, 609
BspANI GGCC 1 cut(s) 420
BspCNI CTCAG 2 cut(s) 109, 247
BspFNI CGCG 6 cut(s) 384, 432, 468, 470, 648, 650
BspMAI CTGCAG 3 cut(s) 102, 426, 478
BspT104I TTCGAA 1 cut(s) 35
BsrDI GCAATG 1 cut(s) 587
BssHII GCGCGC 2 cut(s) 382, 468
BssMI GATC 2 cut(s) 13, 94
Bst4CI ACNGT 1 cut(s) 350
Bst6I CTCTTC 1 cut(s) 198
BstAPI GCANNNNNTGC 1 cut(s) 371
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 9 cut(s) 87, 384, 418, 422, 444, 466, 470, 474, 636
BstDEI CTNAG 4 cut(s) 117, 194, 234, 254
BstF5I GGATG 2 cut(s) 244, 331
BstFNI CGCG 6 cut(s) 384, 432, 468, 470, 648, 650
BstHHI GCGC 8 cut(s) 384, 386, 434, 442, 470, 472, 531, 650
BstKTI GATC 2 cut(s) 16, 97
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 13, 94
BstMCI CGRYCG 1 cut(s) 507
BstNSI RCATGY 2 cut(s) 89, 185
BstSFI CTRYAG 5 cut(s) 98, 393, 422, 474, 524
BstSLI GKGCMC 1 cut(s) 513
BstUI CGCG 6 cut(s) 384, 432, 468, 470, 648, 650
BstV2I GAAGAC 1 cut(s) 345
BsuRI GGCC 1 cut(s) 420
BtsCI GGATG 2 cut(s) 244, 331
BtsI GCAGTG 1 cut(s) 487
BtsIMutI CAGTG 1 cut(s) 487
Cac8I GCNNGC 9 cut(s) 87, 384, 418, 422, 444, 466, 470, 474, 636
CaiI CAGNNNCTG 1 cut(s) 371
CfoI GCGC 8 cut(s) 384, 386, 434, 442, 470, 472, 531, 650
CseI GACGC 1 cut(s) 400
CviAII CATG 4 cut(s) 86, 92, 151, 182
DdeI CTNAG 4 cut(s) 117, 194, 234, 254
DpnI GATC 2 cut(s) 15, 96
DpnII GATC 2 cut(s) 13, 94
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 298
FaeI CATG 4 cut(s) 89, 95, 154, 185
FaiI YATR 5 cut(s) 87, 93, 152, 183, 317
FatI CATG 4 cut(s) 85, 91, 150, 181
FauI CCCGC 2 cut(s) 437, 473
FbaI TGATCA 1 cut(s) 13
FokI GGATG 2 cut(s) 251, 338
FspBI CTAG 1 cut(s) 266
FspI TGCGCA 1 cut(s) 441
GlaI GCGC 8 cut(s) 383, 385, 433, 441, 469, 471, 530, 649
HaeIII GGCC 1 cut(s) 420
HgaI GACGC 1 cut(s) 400
HhaI GCGC 8 cut(s) 384, 386, 434, 442, 470, 472, 531, 650
Hin1II CATG 4 cut(s) 89, 95, 154, 185
Hin6I GCGC 8 cut(s) 382, 384, 432, 440, 468, 470, 529, 648
HinP1I GCGC 8 cut(s) 382, 384, 432, 440, 468, 470, 529, 648
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 128, 303
HphI GGTGA 1 cut(s) 548
Hpy166II GTNNAC 1 cut(s) 458
Hpy188I TCNGA 2 cut(s) 248, 604
Hpy188III TCNNGA 3 cut(s) 11, 236, 266
Hpy8I GTNNAC 1 cut(s) 458
Hpy99I CGWCG 1 cut(s) 416
HpyAV CCTTC 2 cut(s) 31, 629
HpyCH4III ACNGT 1 cut(s) 350
HpyF3I CTNAG 4 cut(s) 117, 194, 234, 254
Hsp92II CATG 4 cut(s) 89, 95, 154, 185
HspAI GCGC 8 cut(s) 382, 384, 432, 440, 468, 470, 529, 648
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 2 cut(s) 13, 94
LmnI GCTCC 2 cut(s) 551, 629
LweI GCATC 5 cut(s) 69, 144, 493, 507, 647
MaeI CTAG 1 cut(s) 266
MalI GATC 2 cut(s) 15, 96
MboI GATC 2 cut(s) 13, 94
MboII GAAGA 3 cut(s) 35, 215, 350
MhlI GDGCHC 2 cut(s) 355, 513
MluCI AATT 2 cut(s) 111, 166
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 1 cut(s) 627
MnlI CCTC 4 cut(s) 251, 270, 315, 325
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 3 cut(s) 69, 90, 649
MspA1I CMGCKG 1 cut(s) 611
MvnI CGCG 6 cut(s) 384, 432, 468, 470, 648, 650
NdeII GATC 2 cut(s) 13, 94
NlaIII CATG 4 cut(s) 89, 95, 154, 185
NsbI TGCGCA 1 cut(s) 441
NspI RCATGY 2 cut(s) 89, 185
NspV TTCGAA 1 cut(s) 35
OliI CACNNNNGTG 1 cut(s) 649
PaeI GCATGC 1 cut(s) 89
PauI GCGCGC 2 cut(s) 382, 468
PcsI WCGNNNNNNNCGW 2 cut(s) 638, 647
PfeI GAWTC 1 cut(s) 303
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PstI CTGCAG 3 cut(s) 102, 426, 478
PstNI CAGNNNCTG 1 cut(s) 371
PteI GCGCGC 2 cut(s) 382, 468
RseI CAYNNNNRTG 3 cut(s) 69, 90, 649
SaqAI TTAA 1 cut(s) 105
Sau3AI GATC 2 cut(s) 13, 94
SchI GAGTC 1 cut(s) 137
SduI GDGCHC 2 cut(s) 355, 513
SetI ASST 7 cut(s) 105, 255, 394, 536, 548, 561, 621
SfaNI GCATC 5 cut(s) 69, 144, 493, 507, 647
SfcI CTRYAG 5 cut(s) 98, 393, 422, 474, 524
SfuI TTCGAA 1 cut(s) 35
SmiMI CAYNNNNRTG 3 cut(s) 69, 90, 649
SphI GCATGC 1 cut(s) 89
Sse9I AATT 2 cut(s) 111, 166
SsiI CCGC 6 cut(s) 280, 283, 430, 466, 576, 609
SspMI CTAG 1 cut(s) 266
TaaI ACNGT 1 cut(s) 350
TaqI TCGA 2 cut(s) 35, 641
TaqII GACCGA 1 cut(s) 493
TasI AATT 2 cut(s) 111, 166
TauI GCSGC 2 cut(s) 283, 578
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 1 cut(s) 494
TspDTI ATGAA 3 cut(s) 17, 192, 255
TspRI CASTG 1 cut(s) 494
XapI RAATTY 1 cut(s) 166
XbaI TCTAGA 1 cut(s) 265
XceI RCATGY 2 cut(s) 89, 185
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.