Rroxscaffold_3G00230680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0018211
Physical Location & Seq
Reverse (-)
15597755 .. 15601915
4161 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00230680.1

Sequence Viewer

Length: 327 bp
ATGACGAAAAAAGCCAAAGAGAGTGCCCAAGAGGCTCAACAAAGGTCCGAGGATGAAATTCGAAAGCTTAGAGACGATCCGCAAGTAGAGATGCGAAAAAGAGCAAAAGAGACTGAGAGATGCGGAAAAAAGCTAAAGAGACTTCCCAAGGGGCTCAACAAAGGTATTGTGGAAAGAAAAAAAATAGGGTTCTTCGATGTGGGCTACGCAGCGGAATTTTCAGATTGTGGTGTGCTACTTCAATATGCTTTGCTTCGGATTCAATTTGATTCGCTTCGTTCGAGAGAGCAAGGCACGATTAGGAGTCATCCTGGTCCGATACCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.43

Weight (kDa)

9.84

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 80, 123, 212
AclWI GGATC 1 cut(s) 71
AcsI RAATTY 2 cut(s) 57, 215
AgsI TTSAA 2 cut(s) 242, 263
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 2 cut(s) 67, 133
AluI AGCT 2 cut(s) 67, 133
Alw26I GTCTC 3 cut(s) 66, 104, 133
AlwI GGATC 1 cut(s) 71
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 2 cut(s) 57, 215
AspS9I GGNCC 2 cut(s) 45, 314
AsuII TTCGAA 1 cut(s) 61
AvaII GGWCC 2 cut(s) 45, 314
BaeGI GKGCMC 1 cut(s) 28
BanII GRGCYC 1 cut(s) 156
BbvI GCAGC 1 cut(s) 221
BciT130I CCWGG 1 cut(s) 312
BcoDI GTCTC 3 cut(s) 66, 104, 133
BglI GCCNNNNNGGC 1 cut(s) 32
BisI GCNGC 1 cut(s) 210
BlsI GCNGC 1 cut(s) 211
Bme1390I CCNGG 1 cut(s) 312
Bme18I GGWCC 2 cut(s) 45, 314
BmgT120I GGNCC 2 cut(s) 45, 314
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 2 cut(s) 81, 110
Bpu14I TTCGAA 1 cut(s) 61
BsaJI CCNNGG 2 cut(s) 48, 147
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 48, 147
BseGI GGATG 2 cut(s) 58, 307
BseMII CTCAG 1 cut(s) 105
BseSI GKGCMC 1 cut(s) 28
BseXI GCAGC 1 cut(s) 221
BsmAI GTCTC 3 cut(s) 66, 104, 133
BsmBI CGTCTC 1 cut(s) 66
Bsp119I TTCGAA 1 cut(s) 61
Bsp1286I GDGCHC 2 cut(s) 28, 156
Bsp143I GATC 1 cut(s) 76
BspACI CCGC 3 cut(s) 80, 123, 212
BspCNI CTCAG 1 cut(s) 106
BspPI GGATC 1 cut(s) 71
BspT104I TTCGAA 1 cut(s) 61
BssECI CCNNGG 2 cut(s) 48, 147
BssMI GATC 1 cut(s) 76
BssT1I CCWWGG 1 cut(s) 147
Bst2UI CCWGG 1 cut(s) 312
BstBI TTCGAA 1 cut(s) 61
BstDEI CTNAG 2 cut(s) 68, 114
BstF5I GGATG 2 cut(s) 58, 307
BstKTI GATC 1 cut(s) 79
BstMAI GTCTC 3 cut(s) 66, 104, 133
BstMBI GATC 1 cut(s) 76
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 312
BstSCI CCNGG 1 cut(s) 310
BstSLI GKGCMC 1 cut(s) 28
BstV1I GCAGC 1 cut(s) 221
BtsCI GGATG 2 cut(s) 58, 307
Cfr13I GGNCC 2 cut(s) 45, 314
CviAII CATG 1 cut(s) 324
CviJI RGCY 6 cut(s) 14, 35, 67, 133, 154, 204
CviKI_1 RGCY 6 cut(s) 14, 35, 67, 133, 154, 204
DdeI CTNAG 2 cut(s) 68, 114
DpnI GATC 1 cut(s) 78
DpnII GATC 1 cut(s) 76
Eco130I CCWWGG 1 cut(s) 147
Eco24I GRGCYC 1 cut(s) 156
Eco47I GGWCC 2 cut(s) 45, 314
EcoRII CCWGG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 1 cut(s) 156
ErhI CCWWGG 1 cut(s) 147
Esp3I CGTCTC 1 cut(s) 66
FaeI CATG 1 cut(s) 327
FaiI YATR 2 cut(s) 246, 325
FatI CATG 1 cut(s) 323
Fnu4HI GCNGC 1 cut(s) 210
FokI GGATG 2 cut(s) 65, 294
FriOI GRGCYC 1 cut(s) 156
Fsp4HI GCNGC 1 cut(s) 210
GluI GCNGC 1 cut(s) 210
Hin1II CATG 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 65
HinfI GANTC 3 cut(s) 259, 269, 304
Hpy188I TCNGA 4 cut(s) 49, 223, 258, 318
Hpy188III TCNNGA 1 cut(s) 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
HpyF3I CTNAG 2 cut(s) 68, 114
Hsp92II CATG 1 cut(s) 327
Kzo9I GATC 1 cut(s) 76
LpnPI CCDG 1 cut(s) 297
Lsp1109I GCAGC 1 cut(s) 221
LweI GCATC 2 cut(s) 81, 110
MalI GATC 1 cut(s) 78
MboI GATC 1 cut(s) 76
MboII GAAGA 1 cut(s) 184
MhlI GDGCHC 2 cut(s) 28, 156
MluCI AATT 3 cut(s) 57, 215, 263
MlyI GAGTC 1 cut(s) 313
MnlI CCTC 2 cut(s) 25, 43
MspA1I CMGCKG 1 cut(s) 212
MspR9I CCNGG 1 cut(s) 312
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 1 cut(s) 32
NdeII GATC 1 cut(s) 76
NlaIII CATG 1 cut(s) 327
NspV TTCGAA 1 cut(s) 61
PcsI WCGNNNNNNNCGW 1 cut(s) 278
PfeI GAWTC 2 cut(s) 259, 269
PkrI GCNGC 1 cut(s) 211
PleI GAGTC 1 cut(s) 312
PpsI GAGTC 1 cut(s) 312
Psp6I CCWGG 1 cut(s) 310
PspGI CCWGG 1 cut(s) 310
PspPI GGNCC 2 cut(s) 45, 314
SatI GCNGC 1 cut(s) 210
Sau3AI GATC 1 cut(s) 76
Sau96I GGNCC 2 cut(s) 45, 314
SchI GAGTC 1 cut(s) 313
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 2 cut(s) 28, 156
SetI ASST 4 cut(s) 47, 69, 135, 166
SfaNI GCATC 2 cut(s) 81, 110
SfuI TTCGAA 1 cut(s) 61
SgeI CNNG 8 cut(s) 41, 61, 95, 160, 294, 302, 307, 323
SinI GGWCC 2 cut(s) 45, 314
Sse9I AATT 3 cut(s) 57, 215, 263
SsiI CCGC 3 cut(s) 80, 123, 212
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 147
TaqI TCGA 3 cut(s) 61, 195, 281
TasI AATT 3 cut(s) 57, 215, 263
TfiI GAWTC 2 cut(s) 259, 269
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 69
VpaK11BI GGWCC 2 cut(s) 45, 314
XapI RAATTY 2 cut(s) 57, 215
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.