Rh7DG402200
ERF Family

P-loop nucleoside triphosphate hydrolase superfamily protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0018211
Physical Location & Seq
Forward (+)
55478952 .. 55480028
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG402200.1

Sequence Viewer

Length: 321 bp
ATGAAACTTCGTGATCAACAAGAAGATGTTGCTTCGAAGGGGTATTCAAAACAAGAAATATCTCATTTGAATGAGCAGATGCAGCATGCACATGATCTGCAGCTTAAACGAATTACTGAGATGATTGAGTCAAAGATGAGAGAGAAAACCATGATGCTTGAACAAAATTTAGCAGATGAACATGCTGCACGACTAAGAGCAGAAGAGACTGCACGAAAGGCTCAACAAAGTTCTCAGGATGAAATCCGAAAGCTTAGAGGCTATCTAGAAGCAGAGAGGCGGCGGACACCGAAACCAGAGAGAATCTGTGCTATTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AIG1

Protein Analysis

106

Amino Acids

12.58

Weight (kDa)

8.79

Isoelectric Point (pI)

65.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 280, 283
AcsI RAATTY 1 cut(s) 166
AgsI TTSAA 3 cut(s) 48, 70, 161
AluBI AGCT 2 cut(s) 103, 253
AluI AGCT 2 cut(s) 103, 253
Alw26I GTCTC 1 cut(s) 200
ApeKI GCWGC 3 cut(s) 82, 100, 185
ApoI RAATTY 1 cut(s) 166
AsuII TTCGAA 1 cut(s) 35
BbvI GCAGC 3 cut(s) 94, 112, 172
BclI TGATCA 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 200
BfaI CTAG 1 cut(s) 266
BfmI CTRYAG 1 cut(s) 98
BisI GCNGC 4 cut(s) 83, 101, 186, 281
BlsI GCNGC 4 cut(s) 84, 102, 187, 282
BmsI GCATC 2 cut(s) 69, 144
Bpu14I TTCGAA 1 cut(s) 35
BseGI GGATG 1 cut(s) 244
BseMII CTCAG 2 cut(s) 108, 248
BseXI GCAGC 3 cut(s) 94, 112, 172
BsgI GTGCAG 2 cut(s) 171, 195
BsmAI GTCTC 1 cut(s) 200
Bsp119I TTCGAA 1 cut(s) 35
Bsp143I GATC 2 cut(s) 13, 94
BspACI CCGC 2 cut(s) 280, 283
BspCNI CTCAG 2 cut(s) 109, 247
BspMAI CTGCAG 1 cut(s) 102
BspT104I TTCGAA 1 cut(s) 35
BssMI GATC 2 cut(s) 13, 94
Bst6I CTCTTC 1 cut(s) 198
BstBI TTCGAA 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 4 cut(s) 117, 194, 234, 254
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 2 cut(s) 16, 97
BstMAI GTCTC 1 cut(s) 200
BstMBI GATC 2 cut(s) 13, 94
BstMWI GCNNNNNNNGC 2 cut(s) 82, 218
BstNSI RCATGY 2 cut(s) 89, 185
BstSFI CTRYAG 1 cut(s) 98
BstV1I GCAGC 3 cut(s) 94, 112, 172
BtsCI GGATG 1 cut(s) 244
Cac8I GCNNGC 1 cut(s) 87
CviAII CATG 4 cut(s) 86, 92, 151, 182
CviJI RGCY 4 cut(s) 103, 221, 253, 261
CviKI_1 RGCY 4 cut(s) 103, 221, 253, 261
DdeI CTNAG 4 cut(s) 117, 194, 234, 254
DpnI GATC 2 cut(s) 15, 96
DpnII GATC 2 cut(s) 13, 94
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
EciI GGCGGA 1 cut(s) 298
FaeI CATG 4 cut(s) 89, 95, 154, 185
FaiI YATR 5 cut(s) 87, 93, 152, 183, 317
FatI CATG 4 cut(s) 85, 91, 150, 181
FbaI TGATCA 1 cut(s) 13
Fnu4HI GCNGC 4 cut(s) 83, 101, 186, 281
FokI GGATG 1 cut(s) 251
Fsp4HI GCNGC 4 cut(s) 83, 101, 186, 281
FspBI CTAG 1 cut(s) 266
GluI GCNGC 4 cut(s) 83, 101, 186, 281
Hin1II CATG 4 cut(s) 89, 95, 154, 185
HindIII AAGCTT 1 cut(s) 251
HinfI GANTC 2 cut(s) 128, 303
Hpy188I TCNGA 1 cut(s) 248
Hpy188III TCNNGA 3 cut(s) 11, 236, 266
HpyAV CCTTC 1 cut(s) 31
HpyCH4V TGCA 5 cut(s) 82, 89, 100, 188, 212
HpyF10VI GCNNNNNNNGC 2 cut(s) 82, 218
HpyF3I CTNAG 4 cut(s) 117, 194, 234, 254
Hsp92II CATG 4 cut(s) 89, 95, 154, 185
Ksp22I TGATCA 1 cut(s) 13
Kzo9I GATC 2 cut(s) 13, 94
LpnPI CCDG 2 cut(s) 221, 309
Lsp1109I GCAGC 3 cut(s) 94, 112, 172
LweI GCATC 2 cut(s) 69, 144
MaeI CTAG 1 cut(s) 266
MalI GATC 2 cut(s) 15, 96
MboI GATC 2 cut(s) 13, 94
MboII GAAGA 2 cut(s) 35, 215
MluCI AATT 2 cut(s) 111, 166
MlyI GAGTC 1 cut(s) 137
MnlI CCTC 2 cut(s) 251, 270
MseI TTAA 1 cut(s) 105
MslI CAYNNNNRTG 2 cut(s) 69, 90
MwoI GCNNNNNNNGC 2 cut(s) 82, 218
NdeII GATC 2 cut(s) 13, 94
NlaIII CATG 4 cut(s) 89, 95, 154, 185
NspI RCATGY 2 cut(s) 89, 185
NspV TTCGAA 1 cut(s) 35
PaeI GCATGC 1 cut(s) 89
PfeI GAWTC 1 cut(s) 303
PkrI GCNGC 4 cut(s) 84, 102, 187, 282
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 102
RseI CAYNNNNRTG 2 cut(s) 69, 90
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 4 cut(s) 83, 101, 186, 281
Sau3AI GATC 2 cut(s) 13, 94
SchI GAGTC 1 cut(s) 137
SetI ASST 2 cut(s) 105, 255
SfaNI GCATC 2 cut(s) 69, 144
SfcI CTRYAG 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 35
SmiMI CAYNNNNRTG 2 cut(s) 69, 90
SphI GCATGC 1 cut(s) 89
Sse9I AATT 2 cut(s) 111, 166
SsiI CCGC 2 cut(s) 280, 283
SspMI CTAG 1 cut(s) 266
TaqI TCGA 1 cut(s) 35
TasI AATT 2 cut(s) 111, 166
TauI GCSGC 1 cut(s) 283
TfiI GAWTC 1 cut(s) 303
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TseI GCWGC 3 cut(s) 82, 100, 185
TspDTI ATGAA 3 cut(s) 17, 192, 255
XapI RAATTY 1 cut(s) 166
XbaI TCTAGA 1 cut(s) 265
XceI RCATGY 2 cut(s) 89, 185
XspI CTAG 1 cut(s) 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.