Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8290967.1

Orthogroup ID

OG0018211

Physical Location & Seq

Genomic Coordinates Forward (+)

402 .. 629

Gene Structure 228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8290967.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 228 bp

atgcagcttgagttaaagatgagagtgaatgctatgacacttgaacaaaagttagcagatgaacatgctgcacgactaagagcagaactgcagatcgcccaagaggctcaacaaaggtctgagaatgagatccgagggcttagatacgatccacaagcagagaagcggatacgcgacagaaacggcagaggccgcataggcctcagagacatatgtcctattctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AIG1

Protein Analysis

75

Amino Acids

8.78

Weight (kDa)

9.61

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018211)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr7g0229181
rosa_laevigata	RLG00000001750
rosa_multiflora	Rmu_co8290967.1_g000001 Rmu_co8475629.1_g000002 Rmu_sc0000693.1_g000013 Rmu_sc0007720.1_g000003 Rmu_sc0007720.1_g000004
rosa_roxburghii	Rroxscaffold_3G00230680 Rroxscaffold_3G00230690
rosa_samantha	Rh7DG402200
rosa_wichuraiana	Rw7G032140

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	174
AciI	CCGC	2 cut(s)	166, 193
AclWI	GGATC	2 cut(s)	124, 143
AgsI	TTSAA	1 cut(s)	44
AluBI	AGCT	1 cut(s)	7
AluI	AGCT	1 cut(s)	7
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	2 cut(s)	124, 143
AoxI	GGCC	2 cut(s)	190, 199
ApeKI	GCWGC	2 cut(s)	4, 68
BbvI	GCAGC	2 cut(s)	16, 55
BceAI	ACGGC	1 cut(s)	199
BciVI	GTATCC	1 cut(s)	162
BcoDI	GTCTC	1 cut(s)	201
BfmI	CTRYAG	1 cut(s)	89
BfuI	GTATCC	1 cut(s)	162
BglI	GCCNNNNNGGC	2 cut(s)	104, 198
BisI	GCNGC	3 cut(s)	5, 69, 193
BlsI	GCNGC	3 cut(s)	6, 70, 194
BoxI	GACNNNNGTC	1 cut(s)	213
BpuEI	CTTGAG	1 cut(s)	29
BsaJI	CCNNGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	133
BseMII	CTCAG	2 cut(s)	111, 217
BseXI	GCAGC	2 cut(s)	16, 55
BsgI	GTGCAG	1 cut(s)	54
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	2 cut(s)	192, 201
BsmAI	GTCTC	1 cut(s)	201
BsmI	GAATGC	1 cut(s)	34
BsnI	GGCC	2 cut(s)	192, 201
Bsp143I	GATC	3 cut(s)	93, 129, 148
BspACI	CCGC	2 cut(s)	166, 193
BspANI	GGCC	2 cut(s)	192, 201
BspCNI	CTCAG	2 cut(s)	112, 216
BspFNI	CGCG	1 cut(s)	174
BspMAI	CTGCAG	1 cut(s)	93
BspPI	GGATC	2 cut(s)	124, 143
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	3 cut(s)	93, 129, 148
BstDEI	CTNAG	4 cut(s)	77, 120, 140, 203
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	3 cut(s)	96, 132, 151
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	3 cut(s)	93, 129, 148
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 192, 198
BstNSI	RCATGY	1 cut(s)	68
BstPAI	GACNNNNGTC	1 cut(s)	213
BstSFI	CTRYAG	1 cut(s)	89
BstUI	CGCG	1 cut(s)	174
BstV1I	GCAGC	2 cut(s)	16, 55
BstX2I	RGATCY	1 cut(s)	129
BstYI	RGATCY	1 cut(s)	129
BsuI	GTATCC	1 cut(s)	162
BsuRI	GGCC	2 cut(s)	192, 201
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	5 cut(s)	7, 107, 139, 192, 201
CviKI_1	RGCY	5 cut(s)	7, 107, 139, 192, 201
DdeI	CTNAG	4 cut(s)	77, 120, 140, 203
DpnI	GATC	3 cut(s)	95, 131, 150
DpnII	GATC	3 cut(s)	93, 129, 148
Eco147I	AGGCCT	1 cut(s)	201
FaeI	CATG	1 cut(s)	68
FaiI	YATR	5 cut(s)	35, 66, 197, 212, 214
FatI	CATG	1 cut(s)	64
FauNDI	CATATG	1 cut(s)	212
Fnu4HI	GCNGC	3 cut(s)	5, 69, 193
Fsp4HI	GCNGC	3 cut(s)	5, 69, 193
GluI	GCNGC	3 cut(s)	5, 69, 193
HaeIII	GGCC	2 cut(s)	192, 201
Hin1II	CATG	1 cut(s)	68
Hpy188I	TCNGA	3 cut(s)	121, 134, 206
HpyCH4V	TGCA	3 cut(s)	4, 71, 91
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 192, 198
HpyF3I	CTNAG	4 cut(s)	77, 120, 140, 203
Hsp92II	CATG	1 cut(s)	68
Kzo9I	GATC	3 cut(s)	93, 129, 148
Lsp1109I	GCAGC	2 cut(s)	16, 55
MalI	GATC	3 cut(s)	95, 131, 150
MboI	GATC	3 cut(s)	93, 129, 148
MflI	RGATCY	1 cut(s)	129
MnlI	CCTC	4 cut(s)	97, 128, 182, 212
MseI	TTAA	2 cut(s)	14, 226
Mva1269I	GAATGC	1 cut(s)	34
MvnI	CGCG	1 cut(s)	174
MwoI	GCNNNNNNNGC	3 cut(s)	104, 192, 198
NdeI	CATATG	1 cut(s)	212
NdeII	GATC	3 cut(s)	93, 129, 148
NlaIII	CATG	1 cut(s)	68
NspI	RCATGY	1 cut(s)	68
PceI	AGGCCT	1 cut(s)	201
PctI	GAATGC	1 cut(s)	34
PkrI	GCNGC	3 cut(s)	6, 70, 194
PshAI	GACNNNNGTC	1 cut(s)	213
PstI	CTGCAG	1 cut(s)	93
PsuI	RGATCY	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	14, 226
SatI	GCNGC	3 cut(s)	5, 69, 193
Sau3AI	GATC	3 cut(s)	93, 129, 148
SetI	ASST	2 cut(s)	9, 119
SfcI	CTRYAG	1 cut(s)	89
SfiI	GGCCNNNNNGGCC	1 cut(s)	198
SgeI	CNNG	8 cut(s)	20, 53, 77, 84, 113, 146, 167, 185
SmlI	CTYRAG	1 cut(s)	8
SmoI	CTYRAG	1 cut(s)	8
SseBI	AGGCCT	1 cut(s)	201
SsiI	CCGC	2 cut(s)	166, 193
StuI	AGGCCT	1 cut(s)	201
TauI	GCSGC	1 cut(s)	195
Tru1I	TTAA	2 cut(s)	14, 226
Tru9I	TTAA	2 cut(s)	14, 226
TseI	GCWGC	2 cut(s)	4, 68
TspDTI	ATGAA	1 cut(s)	75
XceI	RCATGY	1 cut(s)	68

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.