RCHIOBHM_MTG0498561

No description available

Basic Information

Type: gene
Biological Identity
rosa_chinensis
Mt
Physical Location & Seq
Forward (+)
97083 .. 97508
426 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ15622

Sequence Viewer

Length: 255 bp
ATGATACAAATACTCCATGATGCTCGTCTACCAATTCATAGGAGGCAAAGACAAAAGAAAGAGCAAAGGAACTCAGACTCACCTAGTGAGTATATGGATTTCGTGTCTAAGTTTCCAATAACTCTCAAGGAGTTTATGCCACCTGAGTTAATGGACATCCCAGGCGTTGAAAGCCTGTCATGTCAGGTAATTCAAGTGCTTGATGACTCGGCATATCCAAGTCACATAGCACCTACTCTCCCTATAGATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.72

Weight (kDa)

5.25

Isoelectric Point (pI)

77.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019978)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_MTg0498561
rosa_laevigata RLG00000000459
rosa_multiflora Rmu_sc0003129.1_g000010
rosa_roxburghii Rroxscaffold_2G00119260 Rroxscaffold_3G00257290
rosa_samantha Rh2AG001000 Rh2CG000800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 28
AdeI CACNNNGTG 1 cut(s) 86
AgsI TTSAA 2 cut(s) 170, 194
AjnI CCWGG 1 cut(s) 160
AsuHPI GGTGA 1 cut(s) 72
BciT130I CCWGG 1 cut(s) 162
BfaI CTAG 1 cut(s) 84
BfmI CTRYAG 1 cut(s) 243
Bme1390I CCNGG 1 cut(s) 162
BmrFI CCNGG 1 cut(s) 162
BmsI GCATC 1 cut(s) 10
BpuEI CTTGAG 1 cut(s) 110
BsaJI CCNNGG 1 cut(s) 160
BsaXI ACNNNNNCTCC 3 cut(s) 27, 222, 252
BseBI CCWGG 1 cut(s) 162
BseDI CCNNGG 1 cut(s) 160
BseGI GGATG 1 cut(s) 156
BseMII CTCAG 2 cut(s) 87, 135
BspCNI CTCAG 2 cut(s) 86, 136
BssECI CCNNGG 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 162
BstDEI CTNAG 3 cut(s) 73, 108, 144
BstF5I GGATG 1 cut(s) 156
BstMWI GCNNNNNNNGC 1 cut(s) 171
BstNI CCWGG 1 cut(s) 162
BstSCI CCNGG 1 cut(s) 160
BstSFI CTRYAG 1 cut(s) 243
BtsCI GGATG 1 cut(s) 156
CviAII CATG 2 cut(s) 17, 180
CviJI RGCY 1 cut(s) 174
CviKI_1 RGCY 1 cut(s) 174
DdeI CTNAG 3 cut(s) 73, 108, 144
DraIII CACNNNGTG 1 cut(s) 86
EcoRII CCWGG 1 cut(s) 160
FaeI CATG 2 cut(s) 20, 183
FaiI YATR 9 cut(s) 18, 39, 93, 95, 137, 181, 214, 227, 245
FatI CATG 2 cut(s) 16, 179
FblI GTMKAC 1 cut(s) 28
FokI GGATG 1 cut(s) 143
FspBI CTAG 1 cut(s) 84
Hin1II CATG 2 cut(s) 20, 183
HinfI GANTC 2 cut(s) 77, 206
HphI GGTGA 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 29
Hpy188I TCNGA 1 cut(s) 76
Hpy8I GTNNAC 1 cut(s) 29
HpyF10VI GCNNNNNNNGC 1 cut(s) 171
HpyF3I CTNAG 3 cut(s) 73, 108, 144
Hsp92II CATG 2 cut(s) 20, 183
LpnPI CCDG 5 cut(s) 147, 156, 170, 174, 188
LweI GCATC 1 cut(s) 10
MaeI CTAG 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 221
MluCI AATT 2 cut(s) 33, 189
MlyI GAGTC 2 cut(s) 71, 200
MnlI CCTC 1 cut(s) 36
MseI TTAA 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 162
MvaI CCWGG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 171
NlaIII CATG 2 cut(s) 20, 183
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 1 cut(s) 221
PleI GAGTC 2 cut(s) 71, 200
PpsI GAGTC 2 cut(s) 71, 200
Psp6I CCWGG 1 cut(s) 160
PspGI CCWGG 1 cut(s) 160
SaqAI TTAA 1 cut(s) 149
SchI GAGTC 2 cut(s) 71, 200
ScrFI CCNGG 1 cut(s) 162
SetI ASST 4 cut(s) 85, 145, 189, 235
SfaNI GCATC 1 cut(s) 10
SfcI CTRYAG 1 cut(s) 243
SmlI CTYRAG 1 cut(s) 125
SmoI CTYRAG 1 cut(s) 125
Sse9I AATT 2 cut(s) 33, 189
SspMI CTAG 1 cut(s) 84
StyD4I CCNGG 1 cut(s) 160
TasI AATT 2 cut(s) 33, 189
Tru1I TTAA 1 cut(s) 149
Tru9I TTAA 1 cut(s) 149
TseFI GTSAC 1 cut(s) 221
Tsp45I GTSAC 1 cut(s) 221
TspDTI ATGAA 1 cut(s) 26
XmiI GTMKAC 1 cut(s) 28
XspI CTAG 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.