Rroxscaffold_2G00119260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0019978
Physical Location & Seq
Forward (+)
51136923 .. 51138247
1325 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00119260.1

Sequence Viewer

Length: 612 bp
ATGGCTCCTTATCCAGAATGGATGGAACATGTCCCATATCCCCCTTCATATCAAATCCCTAACTTTTTCCGGTTTAATGCCGGAGATGACGCATTGGCTTATTTTGTGTATTTTCAACAAGAGTGTGGGGTAAGAGCTGCTGTCGAGGCTCTCTGTTGCAAACTATTTCGTTACTCGCTTATGGGAAGAACCCCTATTTGGTATGATTACTTCGCCTGGGGATCCATACCCATACGGGAGCTATGGTGTTTTCTCCAAGAGTTAGGAGCACTCAAGGATGGAATATTCCAAATCATGAATGGGGTGACTCCGATGATGATTGGGACTTCCAATCTGAACAAGACAAGACCGATGGTTCTCATACCTCTTCAGTCTCAGGGGATGTGGGGAGTGCAGCACCTGACGGCTGGACCTCTGAAGTTGATGAATTTTTTGAAGGGGGGCATCCCTATAGACCGAGGTGCTGGGGGCACCCTCTCGAGCCAAAACGCAGTTACCCAACGAGGGAGACCACGAATGCTTGCTGGTCAAACATTAGCGGCTAATGGACAACATGTTCGCTATGACATATTAGCTCATCTCAAAAAGATTCCTGCACTCCTCAGCGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

203

Amino Acids

22.79

Weight (kDa)

9.25

Isoelectric Point (pI)

23.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019978)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_MTg0498561
rosa_laevigata RLG00000000459
rosa_multiflora Rmu_sc0003129.1_g000010
rosa_roxburghii Rroxscaffold_2G00119260 Rroxscaffold_3G00257290
rosa_samantha Rh2AG001000 Rh2CG000800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 470
AciI CCGC 1 cut(s) 539
AclWI GGATC 2 cut(s) 216, 229
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 2 cut(s) 353, 437
AfiI CCNNNNNNNGG 2 cut(s) 198, 504
AflIII ACRYGT 2 cut(s) 28, 553
AgsI TTSAA 2 cut(s) 116, 436
AjnI CCWGG 1 cut(s) 215
AjuI GAANNNNNNNTTGG 2 cut(s) 181, 213
AloI GAACNNNNNNTCC 2 cut(s) 540, 572
AluBI AGCT 3 cut(s) 137, 241, 575
AluI AGCT 3 cut(s) 137, 241, 575
Alw21I GWGCWC 1 cut(s) 271
Alw26I GTCTC 2 cut(s) 378, 502
AlwI GGATC 2 cut(s) 216, 229
AlwNI CAGNNNCTG 1 cut(s) 400
Ama87I CYCGRG 1 cut(s) 478
ApeKI GCWGC 2 cut(s) 137, 394
ApoI RAATTY 1 cut(s) 427
ArsI GACNNNNNNTTYG 2 cut(s) 540, 572
AspS9I GGNCC 1 cut(s) 410
AsuHPI GGTGA 1 cut(s) 316
AvaI CYCGRG 1 cut(s) 478
AvaII GGWCC 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 473
BamHI GGATCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 470
BarI GAAGNNNNNNTAC 2 cut(s) 194, 226
Bbv12I GWGCWC 1 cut(s) 271
BbvCI CCTCAGC 1 cut(s) 602
BbvI GCAGC 2 cut(s) 124, 406
BccI CCATC 3 cut(s) 16, 272, 346
BceAI ACGGC 1 cut(s) 420
BciT130I CCWGG 1 cut(s) 217
BcoDI GTCTC 2 cut(s) 378, 502
BfmI CTRYAG 1 cut(s) 450
BisI GCNGC 3 cut(s) 138, 395, 540
BlsI GCNGC 3 cut(s) 139, 396, 541
Bme1390I CCNGG 1 cut(s) 217
Bme18I GGWCC 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 478
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 3 cut(s) 6, 223, 472
BmrFI CCNGG 1 cut(s) 217
BmsI GCATC 1 cut(s) 453
Bpu10I CCTNAGC 1 cut(s) 602
BpuEI CTTGAG 1 cut(s) 257
BsaI GGTCTC 1 cut(s) 502
BsaJI CCNNGG 2 cut(s) 216, 457
BsaWI WCCGGW 1 cut(s) 69
BsaXI ACNNNNNCTCC 2 cut(s) 230, 260
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 504
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 2 cut(s) 216, 457
BseGI GGATG 4 cut(s) 27, 283, 387, 444
BseLI CCNNNNNNNGG 2 cut(s) 198, 504
BseMII CTCAG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 590
BseSI GKGCMC 1 cut(s) 473
BseXI GCAGC 2 cut(s) 124, 406
BseYI CCCAGC 1 cut(s) 464
BsgI GTGCAG 2 cut(s) 413, 579
BshNI GGYRCC 1 cut(s) 470
BsiHKAI GWGCWC 1 cut(s) 271
BsiHKCI CYCGRG 1 cut(s) 478
BsiSI CCGG 2 cut(s) 70, 81
BslFI GGGAC 2 cut(s) 17, 337
BslI CCNNNNNNNGG 2 cut(s) 198, 504
BsmAI GTCTC 2 cut(s) 378, 502
BsmFI GGGAC 2 cut(s) 17, 337
BsmI GAATGC 1 cut(s) 522
Bso31I GGTCTC 1 cut(s) 502
BsoBI CYCGRG 1 cut(s) 478
Bsp1286I GDGCHC 2 cut(s) 271, 473
Bsp143I GATC 1 cut(s) 221
BspACI CCGC 1 cut(s) 539
BspCNI CTCAG 1 cut(s) 388
BspHI TCATGA 1 cut(s) 294
BspLI GGNNCC 3 cut(s) 6, 223, 472
BspPI GGATC 2 cut(s) 216, 229
BspT107I GGYRCC 1 cut(s) 470
BspTNI GGTCTC 1 cut(s) 502
BssECI CCNNGG 2 cut(s) 216, 457
BssMI GATC 1 cut(s) 221
Bst2UI CCWGG 1 cut(s) 217
Bst6I CTCTTC 1 cut(s) 372
BstC8I GCNNGC 1 cut(s) 522
BstDEI CTNAG 2 cut(s) 375, 602
BstF5I GGATG 4 cut(s) 27, 283, 387, 444
BstKTI GATC 1 cut(s) 224
BstMAI GTCTC 2 cut(s) 378, 502
BstMBI GATC 1 cut(s) 221
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNI CCWGG 1 cut(s) 217
BstNSI RCATGY 2 cut(s) 32, 557
BstSCI CCNGG 1 cut(s) 215
BstSFI CTRYAG 1 cut(s) 450
BstSLI GKGCMC 1 cut(s) 473
BstV1I GCAGC 2 cut(s) 124, 406
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BtsCI GGATG 4 cut(s) 27, 283, 387, 444
Cac8I GCNNGC 1 cut(s) 522
CaiI CAGNNNCTG 1 cut(s) 400
CciI TCATGA 1 cut(s) 294
Cfr13I GGNCC 1 cut(s) 410
CseI GACGC 1 cut(s) 98
CviAII CATG 3 cut(s) 29, 295, 554
CviJI RGCY 9 cut(s) 5, 98, 137, 149, 241, 407, 483, 542, 575
CviKI_1 RGCY 9 cut(s) 5, 98, 137, 149, 241, 407, 483, 542, 575
DdeI CTNAG 2 cut(s) 375, 602
DpnI GATC 1 cut(s) 223
DpnII GATC 1 cut(s) 221
Eam1104I CTCTTC 1 cut(s) 372
EarI CTCTTC 1 cut(s) 372
Eco31I GGTCTC 1 cut(s) 502
Eco47I GGWCC 1 cut(s) 410
Eco57I CTGAAG 2 cut(s) 353, 437
Eco88I CYCGRG 1 cut(s) 478
EcoRII CCWGG 1 cut(s) 215
FaeI CATG 3 cut(s) 32, 298, 557
FaqI GGGAC 2 cut(s) 17, 337
FatI CATG 3 cut(s) 28, 294, 553
Fnu4HI GCNGC 3 cut(s) 138, 395, 540
FokI GGATG 4 cut(s) 34, 290, 394, 431
Fsp4HI GCNGC 3 cut(s) 138, 395, 540
GluI GCNGC 3 cut(s) 138, 395, 540
GsaI CCCAGC 1 cut(s) 468
HapII CCGG 2 cut(s) 70, 81
HgaI GACGC 1 cut(s) 98
Hin1II CATG 3 cut(s) 32, 298, 557
HinfI GANTC 2 cut(s) 307, 589
HpaII CCGG 2 cut(s) 70, 81
HphI GGTGA 1 cut(s) 316
Hpy188I TCNGA 3 cut(s) 312, 336, 417
Hpy188III TCNNGA 3 cut(s) 14, 295, 478
HpyAV CCTTC 2 cut(s) 54, 430
HpyCH4V TGCA 3 cut(s) 159, 394, 596
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 375, 602
Hsp92II CATG 3 cut(s) 32, 298, 557
Kzo9I GATC 1 cut(s) 221
LmnI GCTCC 3 cut(s) 10, 238, 266
Lsp1109I GCAGC 2 cut(s) 124, 406
LweI GCATC 1 cut(s) 453
MaeIII GTNAC 3 cut(s) 170, 304, 493
MalI GATC 1 cut(s) 223
MboI GATC 1 cut(s) 221
MboII GAAGA 2 cut(s) 198, 359
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 2 cut(s) 271, 473
MluCI AATT 1 cut(s) 427
MlyI GAGTC 1 cut(s) 301
MnlI CCTC 7 cut(s) 139, 375, 423, 452, 485, 497, 611
MseI TTAA 1 cut(s) 75
MspI CCGG 2 cut(s) 70, 81
MspR9I CCNGG 1 cut(s) 217
Mva1269I GAATGC 1 cut(s) 522
MvaI CCWGG 1 cut(s) 217
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 1 cut(s) 221
NlaIII CATG 3 cut(s) 32, 298, 557
NlaIV GGNNCC 3 cut(s) 6, 223, 472
NmuCI GTSAC 1 cut(s) 304
NspI RCATGY 2 cut(s) 32, 557
PaeR7I CTCGAG 1 cut(s) 478
PagI TCATGA 1 cut(s) 294
PciI ACATGT 2 cut(s) 28, 553
PctI GAATGC 1 cut(s) 522
PfeI GAWTC 1 cut(s) 589
PkrI GCNGC 3 cut(s) 139, 396, 541
PleI GAGTC 1 cut(s) 301
PpsI GAGTC 1 cut(s) 301
PscI ACATGT 2 cut(s) 28, 553
Psp6I CCWGG 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 464
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 3 cut(s) 6, 223, 472
PspPI GGNCC 1 cut(s) 410
PstNI CAGNNNCTG 1 cut(s) 400
PsuI RGATCY 1 cut(s) 221
SaqAI TTAA 1 cut(s) 75
SatI GCNGC 3 cut(s) 138, 395, 540
Sau3AI GATC 1 cut(s) 221
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 1 cut(s) 301
ScrFI CCNGG 1 cut(s) 217
SduI GDGCHC 2 cut(s) 271, 473
SetI ASST 7 cut(s) 139, 243, 367, 402, 415, 463, 577
SfaNI GCATC 1 cut(s) 453
SfcI CTRYAG 1 cut(s) 450
Sfr274I CTCGAG 1 cut(s) 478
SinI GGWCC 1 cut(s) 410
SlaI CTCGAG 1 cut(s) 478
SmlI CTYRAG 2 cut(s) 272, 478
SmoI CTYRAG 2 cut(s) 272, 478
Sse9I AATT 1 cut(s) 427
SsiI CCGC 1 cut(s) 539
SspI AATATT 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 215
TaqI TCGA 2 cut(s) 144, 479
TaqII GACCGA 2 cut(s) 364, 471
TasI AATT 1 cut(s) 427
TauI GCSGC 1 cut(s) 542
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 1 cut(s) 75
Tru9I TTAA 1 cut(s) 75
TseFI GTSAC 1 cut(s) 304
TseI GCWGC 2 cut(s) 137, 394
Tsp45I GTSAC 1 cut(s) 304
TspDTI ATGAA 3 cut(s) 36, 311, 440
VpaK11BI GGWCC 1 cut(s) 410
XapI RAATTY 1 cut(s) 427
XceI RCATGY 2 cut(s) 32, 557
XcmI CCANNNNNNNNNTGG 1 cut(s) 296
XhoI CTCGAG 1 cut(s) 478
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.