Rmu_sc0003129.1_g000010

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003129.1
OG0019978
Physical Location & Seq
Reverse (-)
38562 .. 42842
4281 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003129.1_g000010.1.cds

Sequence Viewer

Length: 1020 bp
atgcttcctaggaaggataagagctcgagagttgtagtgattcagaatttggacgaaatgagcgaggctcctgttgtggttgcatcagaggaagatctacaattaggtaagcctggtagggttaccactctaactgcttcaccagagatattgaaggttcctactgggtcgtcgctaattgatgctaagagaggagaactcaaggatggaatgttccaaatcatgaatgggatcactaagaacaagtccaccggttgcttcttgaccggtcaccagctagaaaaagctgagatggtgaccatggaggagaaaaatgcagctccaccgctagaaaaagctgaggtggtgaccatggaggagaaaaatgcagctccaccgcaccagaaagcttcacagtcggagaagcgaagcccagaaagccgaagaagtcgcagaaccgccatagtagtcgttgcttctcgccttcgattctccgtttccgttcagtgcatggatgatccaagggcaagggattgctggcgactgcgagacgaagacgatggtgtcctcgcgccgccgtgcagtggccggaggatcaatttccggttgggtttcctgccgggtcgcgctacgtctcggcttgtgagaagcaagctgtcactaaacgctctcgccctagtcgacggtgaccttcataatgttcgacggggtcggagccacctagttgtttccttccctcttgccgtcaactctctcaaggaaggtttaaacgagtgtactgagtcacaggagaacctaccatctgcaaattccataaaggatgatgcacttgcaagagttttaggacctgaaactcgtggacgagttcgtgggcttgggtttggtgctacaccatctcgagtcaatgctactattcaaggcagtgcaaaggttaaaaaacttgaagctactgtattaagtcaatcacagaggcttgctcaagttgaagcaaagcttgaagctcttttaaaggccactcaggaggtacaaatctgcccttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_23

Protein Analysis

339

Amino Acids

37.0

Weight (kDa)

9.51

Isoelectric Point (pI)

55.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019978)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_MTg0498561
rosa_laevigata RLG00000000459
rosa_multiflora Rmu_sc0003129.1_g000010
rosa_roxburghii Rroxscaffold_2G00119260 Rroxscaffold_3G00257290
rosa_samantha Rh2AG001000 Rh2CG000800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 542
AccI GTMKAC 1 cut(s) 660
AccII CGCG 2 cut(s) 551, 606
AciI CCGC 4 cut(s) 326, 377, 438, 554
AclWI GGATC 3 cut(s) 239, 491, 581
AcoI YGGCCR 1 cut(s) 565
AcsI RAATTY 2 cut(s) 46, 787
AfaI GTAC 2 cut(s) 757, 1005
AfiI CCNNNNNNNGG 1 cut(s) 563
AgeI ACCGGT 2 cut(s) 251, 266
AgsI TTSAA 5 cut(s) 154, 896, 923, 965, 977
AjnI CCWGG 1 cut(s) 112
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
Alw21I GWGCWC 1 cut(s) 26
Alw26I GTCTC 2 cut(s) 522, 618
AlwI GGATC 3 cut(s) 239, 491, 581
Ama87I CYCGRG 2 cut(s) 25, 876
AoxI GGCC 2 cut(s) 565, 990
ApeKI GCWGC 2 cut(s) 317, 368
ApoI RAATTY 2 cut(s) 46, 787
AsiGI ACCGGT 2 cut(s) 251, 266
AspA2I CCTAGG 1 cut(s) 8
AspLEI GCGC 2 cut(s) 553, 608
AspS9I GGNCC 1 cut(s) 824
AsuC2I CCSGG 1 cut(s) 600
AsuHPI GGTGA 5 cut(s) 132, 263, 307, 358, 677
AvaI CYCGRG 2 cut(s) 25, 876
AvaII GGWCC 1 cut(s) 824
AvrII CCTAGG 1 cut(s) 8
BanII GRGCYC 1 cut(s) 26
BauI CACGAG 1 cut(s) 834
BbsI GAAGAC 1 cut(s) 540
Bbv12I GWGCWC 1 cut(s) 26
BbvCI CCTCAGC 1 cut(s) 339
BbvI GCAGC 2 cut(s) 329, 380
BccI CCATC 5 cut(s) 200, 286, 533, 787, 880
BceAI ACGGC 2 cut(s) 541, 707
BciT130I CCWGG 1 cut(s) 114
BcnI CCSGG 1 cut(s) 600
BcoDI GTCTC 2 cut(s) 522, 618
BfaI CTAG 5 cut(s) 9, 278, 329, 656, 701
BglII AGATCT 1 cut(s) 94
BisI GCNGC 3 cut(s) 318, 369, 554
BlnI CCTAGG 1 cut(s) 8
BlsI GCNGC 3 cut(s) 319, 370, 555
Bme1390I CCNGG 2 cut(s) 114, 600
Bme18I GGWCC 1 cut(s) 824
BmeT110I CYCGRG 2 cut(s) 25, 876
BmgT120I GGNCC 1 cut(s) 824
BmiI GGNNCC 3 cut(s) 69, 159, 695
BmrFI CCNGG 2 cut(s) 114, 600
BmrI ACTGGG 1 cut(s) 174
BmsI GCATC 3 cut(s) 92, 172, 793
BmuI ACTGGG 1 cut(s) 174
BpiI GAAGAC 1 cut(s) 540
BplI GAGNNNNNCTC 6 cut(s) 52, 84, 183, 215, 940, 972
Bpu10I CCTNAGC 1 cut(s) 339
BpuEI CTTGAG 3 cut(s) 185, 719, 942
BpuMI CCSGG 1 cut(s) 600
BsaJI CCNNGG 4 cut(s) 8, 300, 351, 500
BsaWI WCCGGW 3 cut(s) 251, 266, 582
Bsc4I CCNNNNNNNGG 1 cut(s) 563
Bse118I RCCGGY 2 cut(s) 251, 266
Bse1I ACTGG 1 cut(s) 169
BseBI CCWGG 1 cut(s) 114
BseDI CCNNGG 4 cut(s) 8, 300, 351, 500
BseGI GGATG 3 cut(s) 211, 499, 805
BseLI CCNNNNNNNGG 1 cut(s) 563
BseMII CTCAG 4 cut(s) 279, 330, 750, 1010
BseNI ACTGG 1 cut(s) 169
BseRI GAGGAG 3 cut(s) 207, 320, 371
BseXI GCAGC 2 cut(s) 329, 380
BsgI GTGCAG 1 cut(s) 580
Bsh1236I CGCG 2 cut(s) 551, 606
BshFI GGCC 2 cut(s) 567, 992
BshTI ACCGGT 2 cut(s) 251, 266
BsiHKAI GWGCWC 1 cut(s) 26
BsiHKCI CYCGRG 2 cut(s) 25, 876
BsiSI CCGG 5 cut(s) 252, 267, 568, 583, 599
BslI CCNNNNNNNGG 1 cut(s) 563
BsmAI GTCTC 2 cut(s) 522, 618
BsmBI CGTCTC 2 cut(s) 522, 618
BsnI GGCC 2 cut(s) 567, 992
BsoBI CYCGRG 2 cut(s) 25, 876
Bsp1286I GDGCHC 1 cut(s) 26
Bsp143I GATC 4 cut(s) 94, 231, 496, 573
Bsp19I CCATGG 2 cut(s) 300, 351
BspACI CCGC 4 cut(s) 326, 377, 438, 554
BspANI GGCC 2 cut(s) 567, 992
BspCNI CTCAG 4 cut(s) 280, 331, 751, 1009
BspFNI CGCG 2 cut(s) 551, 606
BspHI TCATGA 1 cut(s) 222
BspLI GGNNCC 3 cut(s) 69, 159, 695
BspPI GGATC 3 cut(s) 239, 491, 581
BsrFI RCCGGY 2 cut(s) 251, 266
BsrI ACTGG 1 cut(s) 169
BssAI RCCGGY 2 cut(s) 251, 266
BssECI CCNNGG 4 cut(s) 8, 300, 351, 500
BssMI GATC 4 cut(s) 94, 231, 496, 573
BssSI CACGAG 1 cut(s) 834
BssT1I CCWWGG 4 cut(s) 8, 300, 351, 500
Bst2BI CACGAG 1 cut(s) 834
Bst2UI CCWGG 1 cut(s) 114
Bst4CI ACNGT 3 cut(s) 396, 665, 931
BstC8I GCNNGC 3 cut(s) 518, 632, 954
BstDEI CTNAG 6 cut(s) 186, 237, 288, 339, 759, 996
BstDSI CCRYGG 2 cut(s) 300, 351
BstEII GGTNACC 5 cut(s) 121, 269, 295, 346, 665
BstF5I GGATG 3 cut(s) 211, 499, 805
BstFNI CGCG 2 cut(s) 551, 606
BstHHI GCGC 2 cut(s) 553, 608
BstKTI GATC 4 cut(s) 97, 234, 499, 576
BstMAI GTCTC 2 cut(s) 522, 618
BstMBI GATC 4 cut(s) 94, 231, 496, 573
BstMWI GCNNNNNNNGC 1 cut(s) 417
BstNI CCWGG 1 cut(s) 114
BstPI GGTNACC 5 cut(s) 121, 269, 295, 346, 665
BstSCI CCNGG 2 cut(s) 112, 598
BstUI CGCG 2 cut(s) 551, 606
BstV1I GCAGC 2 cut(s) 329, 380
BstV2I GAAGAC 1 cut(s) 540
BstX2I RGATCY 1 cut(s) 94
BstYI RGATCY 1 cut(s) 94
BsuRI GGCC 2 cut(s) 567, 992
BtgI CCRYGG 2 cut(s) 300, 351
BtsCI GGATG 3 cut(s) 211, 499, 805
BtsI GCAGTG 2 cut(s) 568, 907
BtsIMutI CAGTG 3 cut(s) 491, 568, 907
Cac8I GCNNGC 3 cut(s) 518, 632, 954
CciI TCATGA 1 cut(s) 222
CfoI GCGC 2 cut(s) 553, 608
Cfr10I RCCGGY 2 cut(s) 251, 266
Cfr13I GGNCC 1 cut(s) 824
Csp6I GTAC 2 cut(s) 756, 1004
CspAI ACCGGT 2 cut(s) 251, 266
CviAII CATG 4 cut(s) 223, 301, 352, 490
CviQI GTAC 2 cut(s) 756, 1004
DdeI CTNAG 6 cut(s) 186, 237, 288, 339, 759, 996
DpnI GATC 4 cut(s) 96, 233, 498, 575
DpnII GATC 4 cut(s) 94, 231, 496, 573
DraI TTTAAA 2 cut(s) 747, 987
DrdI GACNNNNNNGTC 1 cut(s) 542
DseDI GACNNNNNNGTC 1 cut(s) 542
EaeI YGGCCR 1 cut(s) 565
Ecl136II GAGCTC 1 cut(s) 24
Eco130I CCWWGG 4 cut(s) 8, 300, 351, 500
Eco24I GRGCYC 1 cut(s) 26
Eco47I GGWCC 1 cut(s) 824
Eco53kI GAGCTC 1 cut(s) 24
Eco88I CYCGRG 2 cut(s) 25, 876
Eco91I GGTNACC 5 cut(s) 121, 269, 295, 346, 665
EcoICRI GAGCTC 1 cut(s) 24
EcoO109I RGGNCCY 1 cut(s) 824
EcoO65I GGTNACC 5 cut(s) 121, 269, 295, 346, 665
EcoRII CCWGG 1 cut(s) 112
EcoT14I CCWWGG 4 cut(s) 8, 300, 351, 500
EcoT38I GRGCYC 1 cut(s) 26
ErhI CCWWGG 4 cut(s) 8, 300, 351, 500
Esp3I CGTCTC 2 cut(s) 522, 618
FaeI CATG 4 cut(s) 226, 304, 355, 493
FaiI YATR 7 cut(s) 224, 302, 353, 443, 491, 675, 794
FalI AAGNNNNNCTT 2 cut(s) 957, 989
FatI CATG 4 cut(s) 222, 300, 351, 489
FblI GTMKAC 1 cut(s) 660
Fnu4HI GCNGC 3 cut(s) 318, 369, 554
FokI GGATG 3 cut(s) 218, 506, 812
FriOI GRGCYC 1 cut(s) 26
Fsp4HI GCNGC 3 cut(s) 318, 369, 554
FspBI CTAG 5 cut(s) 9, 278, 329, 656, 701
GlaI GCGC 2 cut(s) 552, 607
GluI GCNGC 3 cut(s) 318, 369, 554
HaeIII GGCC 2 cut(s) 567, 992
HapII CCGG 5 cut(s) 252, 267, 568, 583, 599
HhaI GCGC 2 cut(s) 553, 608
Hin1II CATG 4 cut(s) 226, 304, 355, 493
Hin6I GCGC 2 cut(s) 551, 606
HinP1I GCGC 2 cut(s) 551, 606
HincII GTYRAC 2 cut(s) 661, 727
HindII GTYRAC 2 cut(s) 661, 727
HindIII AAGCTT 2 cut(s) 387, 971
HinfI GANTC 4 cut(s) 40, 468, 761, 879
HpaII CCGG 5 cut(s) 252, 267, 568, 583, 599
HphI GGTGA 5 cut(s) 132, 263, 307, 358, 677
Hpy166II GTNNAC 5 cut(s) 249, 661, 727, 756, 839
Hpy188I TCNGA 4 cut(s) 45, 88, 400, 693
Hpy188III TCNNGA 5 cut(s) 27, 223, 262, 876, 998
Hpy8I GTNNAC 5 cut(s) 249, 661, 727, 756, 839
Hpy99I CGWCG 3 cut(s) 175, 665, 687
HpyAV CCTTC 6 cut(s) 7, 148, 473, 680, 721, 734
HpyCH4III ACNGT 3 cut(s) 396, 665, 931
HpyCH4IV ACGT 1 cut(s) 611
HpyCH4V TGCA 9 cut(s) 83, 317, 368, 489, 561, 785, 806, 812, 905
HpyF10VI GCNNNNNNNGC 1 cut(s) 417
HpyF3I CTNAG 6 cut(s) 186, 237, 288, 339, 759, 996
HpySE526I ACGT 1 cut(s) 611
Hsp92II CATG 4 cut(s) 226, 304, 355, 493
HspAI GCGC 2 cut(s) 551, 606
Kzo9I GATC 4 cut(s) 94, 231, 496, 573
LmnI GCTCC 4 cut(s) 73, 325, 376, 693
Lsp1109I GCAGC 2 cut(s) 329, 380
LweI GCATC 3 cut(s) 92, 172, 793
MaeI CTAG 5 cut(s) 9, 278, 329, 656, 701
MaeII ACGT 1 cut(s) 611
MaeIII GTNAC 7 cut(s) 121, 269, 295, 346, 636, 665, 762
MalI GATC 4 cut(s) 96, 233, 498, 575
MboI GATC 4 cut(s) 94, 231, 496, 573
MboII GAAGA 3 cut(s) 104, 435, 545
MflI RGATCY 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 26
MluCI AATT 5 cut(s) 46, 101, 177, 577, 787
MlyI GAGTC 2 cut(s) 770, 888
MmeI TCCRAC 2 cut(s) 378, 671
MseI TTAA 4 cut(s) 746, 912, 935, 986
MspI CCGG 5 cut(s) 252, 267, 568, 583, 599
MspR9I CCNGG 2 cut(s) 114, 600
MssI GTTTAAAC 1 cut(s) 747
MvaI CCWGG 1 cut(s) 114
MvnI CGCG 2 cut(s) 551, 606
MwoI GCNNNNNNNGC 1 cut(s) 417
NciI CCSGG 1 cut(s) 600
NcoI CCATGG 2 cut(s) 300, 351
NdeII GATC 4 cut(s) 94, 231, 496, 573
NlaIII CATG 4 cut(s) 226, 304, 355, 493
NlaIV GGNNCC 3 cut(s) 69, 159, 695
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 6 cut(s) 269, 295, 346, 636, 665, 762
PaeR7I CTCGAG 2 cut(s) 25, 876
PagI TCATGA 1 cut(s) 222
PcsI WCGNNNNNNNCGW 2 cut(s) 60, 657
PfeI GAWTC 2 cut(s) 40, 468
PflFI GACNNNGTC 1 cut(s) 687
PinAI ACCGGT 2 cut(s) 251, 266
PkrI GCNGC 3 cut(s) 319, 370, 555
PleI GAGTC 2 cut(s) 769, 887
PmeI GTTTAAAC 1 cut(s) 747
PpsI GAGTC 2 cut(s) 769, 887
PpuMI RGGWCCY 1 cut(s) 824
Psp124BI GAGCTC 1 cut(s) 26
Psp5II RGGWCCY 1 cut(s) 824
Psp6I CCWGG 1 cut(s) 112
PspEI GGTNACC 5 cut(s) 121, 269, 295, 346, 665
PspGI CCWGG 1 cut(s) 112
PspN4I GGNNCC 3 cut(s) 69, 159, 695
PspPI GGNCC 1 cut(s) 824
PspPPI RGGWCCY 1 cut(s) 824
PsuI RGATCY 1 cut(s) 94
PsyI GACNNNGTC 1 cut(s) 687
RsaI GTAC 2 cut(s) 757, 1005
RsaNI GTAC 2 cut(s) 756, 1004
SacI GAGCTC 1 cut(s) 26
SalI GTCGAC 1 cut(s) 659
SaqAI TTAA 4 cut(s) 746, 912, 935, 986
SatI GCNGC 3 cut(s) 318, 369, 554
Sau3AI GATC 4 cut(s) 94, 231, 496, 573
Sau96I GGNCC 1 cut(s) 824
SchI GAGTC 2 cut(s) 770, 888
ScrFI CCNGG 2 cut(s) 114, 600
SduI GDGCHC 1 cut(s) 26
SfaNI GCATC 3 cut(s) 92, 172, 793
Sfr274I CTCGAG 2 cut(s) 25, 876
SinI GGWCC 1 cut(s) 824
SlaI CTCGAG 2 cut(s) 25, 876
SmlI CTYRAG 5 cut(s) 25, 200, 734, 876, 957
SmoI CTYRAG 5 cut(s) 25, 200, 734, 876, 957
Sse9I AATT 5 cut(s) 46, 101, 177, 577, 787
SsiI CCGC 4 cut(s) 326, 377, 438, 554
SspMI CTAG 5 cut(s) 9, 278, 329, 656, 701
SstI GAGCTC 1 cut(s) 26
StyD4I CCNGG 2 cut(s) 112, 598
StyI CCWWGG 4 cut(s) 8, 300, 351, 500
TaaI ACNGT 3 cut(s) 396, 665, 931
TaiI ACGT 1 cut(s) 614
TaqI TCGA 5 cut(s) 26, 466, 660, 682, 877
TasI AATT 5 cut(s) 46, 101, 177, 577, 787
TatI WGTACW 1 cut(s) 755
TauI GCSGC 1 cut(s) 556
TfiI GAWTC 2 cut(s) 40, 468
Tru1I TTAA 4 cut(s) 746, 912, 935, 986
Tru9I TTAA 4 cut(s) 746, 912, 935, 986
TscAI CASTG 3 cut(s) 491, 568, 907
TseFI GTSAC 6 cut(s) 269, 295, 346, 636, 665, 762
TseI GCWGC 2 cut(s) 317, 368
Tsp45I GTSAC 6 cut(s) 269, 295, 346, 636, 665, 762
TspDTI ATGAA 2 cut(s) 239, 662
TspGWI ACGGA 2 cut(s) 463, 469
TspRI CASTG 3 cut(s) 491, 568, 907
Tth111I GACNNNGTC 1 cut(s) 687
VpaK11BI GGWCC 1 cut(s) 824
XapI RAATTY 2 cut(s) 46, 787
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XhoI CTCGAG 2 cut(s) 25, 876
XmaJI CCTAGG 1 cut(s) 8
XmiI GTMKAC 1 cut(s) 660
XspI CTAG 5 cut(s) 9, 278, 329, 656, 701
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.