Rh2AG001000

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
131839 .. 135747
3909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG001000.1

Sequence Viewer

Length: 219 bp
ATGAGCAAGGCTCTTGTTGTGGTTGCATCAGAGGAAGATCTACAGTTAAGTAAGCCTGGTAGGGTTACCACTCTAACTGCTTCACCAGAGAAATTGAAGGTTCCTATTGGGTTGTCGCTAATTGATGCTAGAGAGGAAGGTTTAAAAGAGTGTACTGAGTCACAGGAGAACCCACCATTTGCAAATTCCATAAGGGATGATGCACTTGCAAGAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

7.76

Weight (kDa)

4.82

Isoelectric Point (pI)

65.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019978)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_MTg0498561
rosa_laevigata RLG00000000459
rosa_multiflora Rmu_sc0003129.1_g000010
rosa_roxburghii Rroxscaffold_2G00119260 Rroxscaffold_3G00257290
rosa_samantha Rh2AG001000 Rh2CG000800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 184
AfaI GTAC 1 cut(s) 154
AgsI TTSAA 1 cut(s) 97
AjnI CCWGG 1 cut(s) 55
ApoI RAATTY 1 cut(s) 184
AsuHPI GGTGA 1 cut(s) 75
BciT130I CCWGG 1 cut(s) 57
BfaI CTAG 1 cut(s) 129
BfmI CTRYAG 1 cut(s) 41
BglII AGATCT 1 cut(s) 37
Bme1390I CCNGG 1 cut(s) 57
BmiI GGNNCC 1 cut(s) 102
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 3 cut(s) 35, 115, 190
BplI GAGNNNNNCTC 1 cut(s) 27
BseBI CCWGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 147
Bsp143I GATC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 148
BspLI GGNNCC 1 cut(s) 102
BssMI GATC 1 cut(s) 37
Bst2UI CCWGG 1 cut(s) 57
Bst4CI ACNGT 1 cut(s) 45
BstDEI CTNAG 1 cut(s) 156
BstEII GGTNACC 1 cut(s) 64
BstF5I GGATG 1 cut(s) 202
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstNI CCWGG 1 cut(s) 57
BstPI GGTNACC 1 cut(s) 64
BstSCI CCNGG 1 cut(s) 55
BstSFI CTRYAG 1 cut(s) 41
BstX2I RGATCY 1 cut(s) 37
BstYI RGATCY 1 cut(s) 37
BtsCI GGATG 1 cut(s) 202
Csp6I GTAC 1 cut(s) 153
CviJI RGCY 2 cut(s) 11, 55
CviKI_1 RGCY 2 cut(s) 11, 55
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
DraI TTTAAA 1 cut(s) 144
Eco91I GGTNACC 1 cut(s) 64
EcoO65I GGTNACC 1 cut(s) 64
EcoRII CCWGG 1 cut(s) 55
FaiI YATR 1 cut(s) 191
FokI GGATG 1 cut(s) 209
FspBI CTAG 1 cut(s) 129
HinfI GANTC 1 cut(s) 158
HphI GGTGA 1 cut(s) 75
Hpy166II GTNNAC 1 cut(s) 153
Hpy188I TCNGA 1 cut(s) 31
Hpy8I GTNNAC 1 cut(s) 153
HpyAV CCTTC 2 cut(s) 91, 131
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4V TGCA 4 cut(s) 26, 182, 203, 209
HpyF3I CTNAG 1 cut(s) 156
Kzo9I GATC 1 cut(s) 37
LpnPI CCDG 4 cut(s) 42, 69, 99, 149
LweI GCATC 3 cut(s) 35, 115, 190
MaeI CTAG 1 cut(s) 129
MaeIII GTNAC 2 cut(s) 64, 159
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 1 cut(s) 47
MflI RGATCY 1 cut(s) 37
MluCI AATT 3 cut(s) 92, 120, 184
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 2 cut(s) 25, 127
MseI TTAA 2 cut(s) 47, 143
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
NdeII GATC 1 cut(s) 37
NlaIV GGNNCC 1 cut(s) 102
NmuCI GTSAC 1 cut(s) 159
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
Psp6I CCWGG 1 cut(s) 55
PspEI GGTNACC 1 cut(s) 64
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 102
PsuI RGATCY 1 cut(s) 37
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 2 cut(s) 47, 143
Sau3AI GATC 1 cut(s) 37
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 57
SetI ASST 2 cut(s) 102, 142
SfaNI GCATC 3 cut(s) 35, 115, 190
SfcI CTRYAG 1 cut(s) 41
SgeI CNNG 7 cut(s) 19, 26, 68, 69, 98, 141, 176
Sse9I AATT 3 cut(s) 92, 120, 184
SspMI CTAG 1 cut(s) 129
StyD4I CCNGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 45
TasI AATT 3 cut(s) 92, 120, 184
TatI WGTACW 1 cut(s) 152
Tru1I TTAA 2 cut(s) 47, 143
Tru9I TTAA 2 cut(s) 47, 143
TseFI GTSAC 1 cut(s) 159
Tsp45I GTSAC 1 cut(s) 159
XapI RAATTY 1 cut(s) 184
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.