Rroxscaffold_3G00257290

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
Physical Location & Seq
Forward (+)
51669503 .. 51672864
3362 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00257290.1

Sequence Viewer

Length: 225 bp
ATGGAATATTCCAAATTCCAAATCATGAATAGGGTGACTCCGATGATGATTGGGACTTCCAATCTGAACAAGACCGATGGTTCTCATACTTCTTCAGCCTCAGGGGATGTGGGGAGTGTAGCACCTAACGGCTGGACCTCTGAAGTTGATGAATTTTTTGAAGATTGTGTAATGGAAGAGCTTGAGAAGTTGGGTCAGAACTATCGTGACATCGTGTGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.33

Weight (kDa)

4.3

Isoelectric Point (pI)

13.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019978)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_MTg0498561
rosa_laevigata RLG00000000459
rosa_multiflora Rmu_sc0003129.1_g000010
rosa_roxburghii Rroxscaffold_2G00119260 Rroxscaffold_3G00257290
rosa_samantha Rh2AG001000 Rh2CG000800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 14, 152
AcuI CTGAAG 2 cut(s) 78, 162
AgsI TTSAA 1 cut(s) 161
AluBI AGCT 1 cut(s) 181
AluI AGCT 1 cut(s) 181
ApoI RAATTY 2 cut(s) 14, 152
AspS9I GGNCC 1 cut(s) 135
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 135
AxyI CCTNAGG 1 cut(s) 100
BccI CCATC 1 cut(s) 71
BceAI ACGGC 1 cut(s) 145
Bme18I GGWCC 1 cut(s) 135
BmgT120I GGNCC 1 cut(s) 135
BpuEI CTTGAG 1 cut(s) 203
Bse21I CCTNAGG 1 cut(s) 100
BseGI GGATG 1 cut(s) 112
BseMII CTCAG 1 cut(s) 114
BslFI GGGAC 1 cut(s) 67
BsmFI GGGAC 1 cut(s) 67
BspCNI CTCAG 1 cut(s) 113
BspHI TCATGA 1 cut(s) 24
BspQI GCTCTTC 1 cut(s) 171
Bst6I CTCTTC 1 cut(s) 171
BstDEI CTNAG 1 cut(s) 100
BstF5I GGATG 1 cut(s) 112
Bsu36I CCTNAGG 1 cut(s) 100
BtsCI GGATG 1 cut(s) 112
CciI TCATGA 1 cut(s) 24
Cfr13I GGNCC 1 cut(s) 135
CviAII CATG 1 cut(s) 25
CviJI RGCY 4 cut(s) 98, 132, 181, 220
CviKI_1 RGCY 4 cut(s) 98, 132, 181, 220
DdeI CTNAG 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 171
EarI CTCTTC 1 cut(s) 171
Eco47I GGWCC 1 cut(s) 135
Eco57I CTGAAG 2 cut(s) 78, 162
Eco81I CCTNAGG 1 cut(s) 100
FaeI CATG 1 cut(s) 28
FaiI YATR 2 cut(s) 26, 87
FaqI GGGAC 1 cut(s) 67
FatI CATG 1 cut(s) 24
FokI GGATG 1 cut(s) 119
Hin1II CATG 1 cut(s) 28
HinfI GANTC 1 cut(s) 37
HphI GGTGA 1 cut(s) 46
Hpy188I TCNGA 5 cut(s) 42, 66, 142, 198, 224
Hpy188III TCNNGA 2 cut(s) 25, 206
HpyF3I CTNAG 1 cut(s) 100
Hsp92II CATG 1 cut(s) 28
LguI GCTCTTC 1 cut(s) 171
LpnPI CCDG 2 cut(s) 87, 118
MaeIII GTNAC 2 cut(s) 34, 206
MboII GAAGA 3 cut(s) 84, 173, 188
MluCI AATT 2 cut(s) 14, 152
MlyI GAGTC 1 cut(s) 31
MnlI CCTC 2 cut(s) 109, 148
NlaIII CATG 1 cut(s) 28
NmuCI GTSAC 2 cut(s) 34, 206
PagI TCATGA 1 cut(s) 24
PciSI GCTCTTC 1 cut(s) 171
PleI GAGTC 1 cut(s) 31
PpsI GAGTC 1 cut(s) 31
PspPI GGNCC 1 cut(s) 135
SapI GCTCTTC 1 cut(s) 171
Sau96I GGNCC 1 cut(s) 135
SchI GAGTC 1 cut(s) 31
SetI ASST 3 cut(s) 127, 140, 183
SgeI CNNG 6 cut(s) 37, 82, 114, 145, 194, 218
SinI GGWCC 1 cut(s) 135
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 2 cut(s) 14, 152
SspI AATATT 1 cut(s) 8
TaqII GACCGA 1 cut(s) 89
TasI AATT 2 cut(s) 14, 152
TseFI GTSAC 2 cut(s) 34, 206
Tsp45I GTSAC 2 cut(s) 34, 206
TspDTI ATGAA 2 cut(s) 41, 165
VpaK11BI GGWCC 1 cut(s) 135
XapI RAATTY 2 cut(s) 14, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.