RLG00000001038

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018216
Physical Location & Seq
Forward (+)
9549736 .. 9550179
444 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001038

Sequence Viewer

Length: 372 bp
ATGCAAACAAGACTTGATCCCCCTTGTAATTGCGATCTCTACGCTCACCTTCACATCGATCTTGAGCTTCGTGGTGTCGCCGACAGATTCCCAACCAATAGAGCAGGCGAGGTAGGTGCAGTCAGTGTAGAAGGTGAGCTTCTCGTCCCGGGAGAGGAGCTGGCAGTGGGCCTCCTTGATAAAGAGGAACTCCAGCGAGGTGGGGAGCTGGTTAAGATTTTGAATTGGATCCTAGAGATCCTGCAAACAAGCTATAGAGGTGGGTCGGAGTTATTGTGGTCGTGCTCTGAGGGGGAAGTCGAGACGGGTCGGCGTTATTCTGGTCGGGATCTGAGGGGCAAGTCGAGACGGGTTGAGACATGGTGGTGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

124

Amino Acids

13.95

Weight (kDa)

4.97

Isoelectric Point (pI)

42.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 5 cut(s) 11, 223, 232, 236, 336
AfiI CCNNNNNNNGG 1 cut(s) 154
AgsI TTSAA 1 cut(s) 223
AluBI AGCT 5 cut(s) 67, 139, 160, 208, 252
AluI AGCT 5 cut(s) 67, 139, 160, 208, 252
Alw21I GWGCWC 1 cut(s) 287
Alw26I GTCTC 3 cut(s) 296, 340, 350
AlwI GGATC 5 cut(s) 11, 223, 232, 236, 336
Ama87I CYCGRG 1 cut(s) 148
AoxI GGCC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 169
AsuC2I CCSGG 2 cut(s) 149, 150
AsuHPI GGTGA 2 cut(s) 38, 146
AvaI CYCGRG 1 cut(s) 148
BamHI GGATCC 1 cut(s) 228
Bbv12I GWGCWC 1 cut(s) 287
BcgI CGANNNNNNTGC 2 cut(s) 98, 132
BcnI CCSGG 2 cut(s) 149, 150
BcoDI GTCTC 3 cut(s) 296, 340, 350
BfaI CTAG 1 cut(s) 233
BfmI CTRYAG 1 cut(s) 253
Bme1390I CCNGG 2 cut(s) 149, 150
BmeT110I CYCGRG 1 cut(s) 148
BmgT120I GGNCC 1 cut(s) 169
BmiI GGNNCC 1 cut(s) 230
BmrFI CCNGG 2 cut(s) 149, 150
BpmI CTGGAG 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 83
BpuMI CCSGG 2 cut(s) 149, 150
Bsa29I ATCGAT 1 cut(s) 57
BsaJI CCNNGG 1 cut(s) 148
BsaXI ACNNNNNCTCC 2 cut(s) 260, 290
Bsc4I CCNNNNNNNGG 1 cut(s) 154
BseCI ATCGAT 1 cut(s) 57
BseDI CCNNGG 1 cut(s) 148
BseLI CCNNNNNNNGG 1 cut(s) 154
BseMII CTCAG 2 cut(s) 279, 323
BseRI GAGGAG 1 cut(s) 170
BsgI GTGCAG 1 cut(s) 138
BshFI GGCC 1 cut(s) 171
BshVI ATCGAT 1 cut(s) 57
BsiHKAI GWGCWC 1 cut(s) 287
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 1 cut(s) 149
BslFI GGGAC 1 cut(s) 131
BslI CCNNNNNNNGG 1 cut(s) 154
BsmAI GTCTC 3 cut(s) 296, 340, 350
BsmBI CGTCTC 2 cut(s) 296, 340
BsmFI GGGAC 1 cut(s) 131
BsnI GGCC 1 cut(s) 171
BsoBI CYCGRG 1 cut(s) 148
Bsp1286I GDGCHC 1 cut(s) 287
Bsp143I GATC 6 cut(s) 16, 34, 58, 228, 237, 328
BspANI GGCC 1 cut(s) 171
BspCNI CTCAG 2 cut(s) 280, 324
BspDI ATCGAT 1 cut(s) 57
BspLI GGNNCC 1 cut(s) 230
BspPI GGATC 5 cut(s) 11, 223, 232, 236, 336
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 6 cut(s) 16, 34, 58, 228, 237, 328
BstC8I GCNNGC 2 cut(s) 106, 162
BstDEI CTNAG 2 cut(s) 288, 332
BstKTI GATC 6 cut(s) 19, 37, 61, 231, 240, 331
BstMAI GTCTC 3 cut(s) 296, 340, 350
BstMBI GATC 6 cut(s) 16, 34, 58, 228, 237, 328
BstSCI CCNGG 2 cut(s) 147, 148
BstSFI CTRYAG 1 cut(s) 253
BstX2I RGATCY 3 cut(s) 228, 237, 328
BstXI CCANNNNNNTGG 1 cut(s) 200
BstYI RGATCY 3 cut(s) 228, 237, 328
Bsu15I ATCGAT 1 cut(s) 57
BsuRI GGCC 1 cut(s) 171
BsuTUI ATCGAT 1 cut(s) 57
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 130, 171
Cac8I GCNNGC 2 cut(s) 106, 162
Cfr13I GGNCC 1 cut(s) 169
Cfr9I CCCGGG 1 cut(s) 148
ClaI ATCGAT 1 cut(s) 57
CviAII CATG 1 cut(s) 360
CviJI RGCY 6 cut(s) 67, 139, 160, 171, 208, 252
CviKI_1 RGCY 6 cut(s) 67, 139, 160, 171, 208, 252
DdeI CTNAG 2 cut(s) 288, 332
DpnI GATC 6 cut(s) 18, 36, 60, 230, 239, 330
DpnII GATC 6 cut(s) 16, 34, 58, 228, 237, 328
Eco88I CYCGRG 1 cut(s) 148
Esp3I CGTCTC 2 cut(s) 296, 340
FaeI CATG 1 cut(s) 363
FaiI YATR 2 cut(s) 255, 361
FalI AAGNNNNNCTT 2 cut(s) 123, 155
FaqI GGGAC 1 cut(s) 131
FatI CATG 1 cut(s) 359
FspBI CTAG 1 cut(s) 233
GsuI CTGGAG 1 cut(s) 176
HaeIII GGCC 1 cut(s) 171
HapII CCGG 1 cut(s) 149
Hin1II CATG 1 cut(s) 363
HinfI GANTC 1 cut(s) 87
HpaII CCGG 1 cut(s) 149
HphI GGTGA 2 cut(s) 38, 146
Hpy188I TCNGA 3 cut(s) 268, 289, 333
Hpy188III TCNNGA 4 cut(s) 62, 301, 326, 345
HpyAV CCTTC 2 cut(s) 59, 125
HpyCH4V TGCA 3 cut(s) 4, 119, 244
HpyF3I CTNAG 2 cut(s) 288, 332
Hsp92II CATG 1 cut(s) 363
Kzo9I GATC 6 cut(s) 16, 34, 58, 228, 237, 328
LmnI GCTCC 2 cut(s) 157, 205
LpnPI CCDG 7 cut(s) 90, 146, 162, 194, 206, 254, 306
MaeI CTAG 1 cut(s) 233
MalI GATC 6 cut(s) 18, 36, 60, 230, 239, 330
MboI GATC 6 cut(s) 16, 34, 58, 228, 237, 328
MflI RGATCY 3 cut(s) 228, 237, 328
MhlI GDGCHC 1 cut(s) 287
MluCI AATT 2 cut(s) 28, 223
MmeI TCCRAC 1 cut(s) 246
MnlI CCTC 8 cut(s) 103, 148, 178, 182, 191, 251, 283, 327
MseI TTAA 1 cut(s) 213
MslI CAYNNNNRTG 1 cut(s) 364
MspI CCGG 1 cut(s) 149
MspR9I CCNGG 2 cut(s) 149, 150
NciI CCSGG 2 cut(s) 149, 150
NdeII GATC 6 cut(s) 16, 34, 58, 228, 237, 328
NlaIII CATG 1 cut(s) 363
NlaIV GGNNCC 1 cut(s) 230
PfeI GAWTC 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 230
PspPI GGNCC 1 cut(s) 169
PsuI RGATCY 3 cut(s) 228, 237, 328
RseI CAYNNNNRTG 1 cut(s) 364
SaqAI TTAA 1 cut(s) 213
Sau3AI GATC 6 cut(s) 16, 34, 58, 228, 237, 328
Sau96I GGNCC 1 cut(s) 169
ScrFI CCNGG 2 cut(s) 149, 150
SduI GDGCHC 1 cut(s) 287
SfcI CTRYAG 1 cut(s) 253
SmaI CCCGGG 1 cut(s) 150
SmiMI CAYNNNNRTG 1 cut(s) 364
SmlI CTYRAG 1 cut(s) 62
SmoI CTYRAG 1 cut(s) 62
Sse9I AATT 2 cut(s) 28, 223
SspMI CTAG 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 147, 148
TaqI TCGA 3 cut(s) 57, 300, 344
TasI AATT 2 cut(s) 28, 223
TfiI GAWTC 1 cut(s) 87
Tru1I TTAA 1 cut(s) 213
Tru9I TTAA 1 cut(s) 213
TscAI CASTG 2 cut(s) 130, 171
TspMI CCCGGG 1 cut(s) 148
TspRI CASTG 2 cut(s) 130, 171
XmaI CCCGGG 1 cut(s) 148
XspI CTAG 1 cut(s) 233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.