Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001955.1

Orthogroup ID

OG0018216

Physical Location & Seq

Genomic Coordinates Reverse (-)

121351 .. 122810

Gene Structure 1460 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001955.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

atgcaacatcacagagcttatggacaccaggttttgccagttttctatgatgtcgatccaaaggatgtgaggaatcagagagggagttttgcaaaagcatttgccaaacatgtattcgagcaaaaaatggataaggtggaggagtggcgaagagcactcagtgatgttgcagacatgggagggatggttttaggagatcagtatgagtcacagttcatccaacatattgttcatgaaactctgaaaatgctgaatgactcgttatttaaaggttgttccaatattgttggaatgccctaccgtgtgcaaacgctgaatagatggctgaaagatggatcaaatgatgttgatgtggctgtgatatgtggctgtttgagcccaaaagtaattttggcaagatcctttagtggatttagcacagcgggccgatacctgcgagccaaaaataagcctacttgggtttgggttacagcttcgcccattccgtggacaaagaaaggacctctctcaaatcaatcaatcccaacgattacaaagcctccccggagcaaaccttcaacctcgttgaaacccggtgaccgcgcgccagtcctagtctctccaagagccgattgtcagcatcaccagatcaatccggcgaccgtacttccagtcctagtatctccaagagctgactgccagtaccactgccaccgagactctatcaaccagcgaagcaagggcaggaagtcctttctcggaaggctggagaagaaccttgtggcgaggttggtgctctcctcgtccacaatgcttgaagaagaagtcaggtcaagggattccctcgacgactgcaccccacggtgctggcacgcccgcgtacacgctcaaaagagacagcttgcacgccaactggttttggagccaaacattttggcacgcccagtgggacgacaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8 NB-ARC TIR

Protein Analysis

312

Amino Acids

35.33

Weight (kDa)

9.85

Isoelectric Point (pI)

48.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018216)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001038 RLG00000012682
rosa_multiflora	Rmu_sc0001935.1_g000003 Rmu_sc0001955.1_g000030 Rmu_sc0006638.1_g000011
rosa_samantha	Rh3AG281000 Rh3BG316800 Rh4DG274500 Rh6BG300600 Rh6CG296000 Rh6DG287800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	441
AccB7I	CCANNNNNTGG	1 cut(s)	486
AccII	CGCG	3 cut(s)	582, 584, 858
AciI	CCGC	3 cut(s)	422, 580, 856
AclWI	GGATC	3 cut(s)	50, 343, 393
AdeI	CACNNNGTG	1 cut(s)	161
AfaI	GTAC	3 cut(s)	645, 683, 861
AfiI	CCNNNNNNNGG	1 cut(s)	486
AflIII	ACRYGT	1 cut(s)	109
AgsI	TTSAA	3 cut(s)	558, 568, 797
AjnI	CCWGG	1 cut(s)	27
AjuI	GAANNNNNNNTTGG	4 cut(s)	98, 130, 213, 245
AluBI	AGCT	4 cut(s)	17, 473, 671, 880
AluI	AGCT	4 cut(s)	17, 473, 671, 880
Alw21I	GWGCWC	2 cut(s)	157, 777
Alw26I	GTCTC	3 cut(s)	601, 690, 868
AlwI	GGATC	3 cut(s)	50, 343, 393
AoxI	GGCC	1 cut(s)	424
AspLEI	GCGC	2 cut(s)	584, 586
AspS9I	GGNCC	2 cut(s)	424, 500
AsuC2I	CCSGG	2 cut(s)	544, 573
AsuHPI	GGTGA	2 cut(s)	587, 614
AvaII	GGWCC	1 cut(s)	500
BanII	GRGCYC	1 cut(s)	380
Bbv12I	GWGCWC	2 cut(s)	157, 777
BccI	CCATC	3 cut(s)	178, 315, 326
BcgI	CGANNNNNNTGC	2 cut(s)	754, 788
BciT130I	CCWGG	1 cut(s)	29
BcnI	CCSGG	2 cut(s)	544, 573
BcoDI	GTCTC	3 cut(s)	601, 690, 868
BfaI	CTAG	2 cut(s)	593, 656
BfuAI	ACCTGC	1 cut(s)	441
Bme1390I	CCNGG	3 cut(s)	29, 544, 573
Bme18I	GGWCC	1 cut(s)	500
BmgT120I	GGNCC	2 cut(s)	424, 500
BmiI	GGNNCC	1 cut(s)	903
BmrFI	CCNGG	3 cut(s)	29, 544, 573
BmrI	ACTGGG	1 cut(s)	917
BmsI	GCATC	1 cut(s)	628
BmuI	ACTGGG	1 cut(s)	917
BpmI	CTGGAG	1 cut(s)	767
BpuMI	CCSGG	2 cut(s)	544, 573
BsaBI	GATNNNNATC	1 cut(s)	54
BsaJI	CCNNGG	3 cut(s)	485, 542, 839
BsaXI	ACNNNNNCTCC	4 cut(s)	171, 201, 523, 553
Bsc4I	CCNNNNNNNGG	1 cut(s)	486
Bse1I	ACTGG	6 cut(s)	38, 587, 650, 679, 897, 923
Bse8I	GATNNNNATC	1 cut(s)	54
BseBI	CCWGG	1 cut(s)	29
BseDI	CCNNGG	3 cut(s)	485, 542, 839
BseGI	GGATG	3 cut(s)	70, 189, 216
BseJI	GATNNNNATC	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	486
BseMII	CTCAG	1 cut(s)	172
BseNI	ACTGG	6 cut(s)	38, 587, 650, 679, 897, 923
BsePI	GCGCGC	1 cut(s)	582
BseRI	GAGGAG	2 cut(s)	155, 769
BsgI	GTGCAG	1 cut(s)	817
Bsh1236I	CGCG	3 cut(s)	582, 584, 858
Bsh1285I	CGRYCG	1 cut(s)	642
BshFI	GGCC	1 cut(s)	426
BsiEI	CGRYCG	1 cut(s)	642
BsiHKAI	GWGCWC	2 cut(s)	157, 777
BsiSI	CCGG	3 cut(s)	544, 573, 635
BslI	CCNNNNNNNGG	1 cut(s)	486
BsmAI	GTCTC	3 cut(s)	601, 690, 868
BsmI	GAATGC	1 cut(s)	297
BsnI	GGCC	1 cut(s)	426
Bsp1286I	GDGCHC	3 cut(s)	157, 380, 777
Bsp143I	GATC	5 cut(s)	55, 196, 335, 398, 627
BspACI	CCGC	3 cut(s)	422, 580, 856
BspANI	GGCC	1 cut(s)	426
BspCNI	CTCAG	1 cut(s)	171
BspFNI	CGCG	3 cut(s)	582, 584, 858
BspHI	TCATGA	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	903
BspMI	ACCTGC	1 cut(s)	441
BspPI	GGATC	3 cut(s)	50, 343, 393
BspQI	GCTCTTC	1 cut(s)	145
BsrI	ACTGG	6 cut(s)	38, 587, 650, 679, 897, 923
BssECI	CCNNGG	3 cut(s)	485, 542, 839
BssHII	GCGCGC	1 cut(s)	582
BssMI	GATC	5 cut(s)	55, 196, 335, 398, 627
Bst2UI	CCWGG	1 cut(s)	29
Bst4CI	ACNGT	4 cut(s)	213, 302, 643, 843
Bst6I	CTCTTC	1 cut(s)	145
BstC8I	GCNNGC	9 cut(s)	424, 438, 584, 848, 852, 856, 882, 886, 919
BstDEI	CTNAG	1 cut(s)	158
BstDSI	CCRYGG	2 cut(s)	485, 839
BstEII	GGTNACC	1 cut(s)	575
BstF5I	GGATG	3 cut(s)	70, 189, 216
BstFNI	CGCG	3 cut(s)	582, 584, 858
BstHHI	GCGC	2 cut(s)	584, 586
BstKTI	GATC	5 cut(s)	58, 199, 338, 401, 630
BstMAI	GTCTC	3 cut(s)	601, 690, 868
BstMBI	GATC	5 cut(s)	55, 196, 335, 398, 627
BstMCI	CGRYCG	1 cut(s)	642
BstMWI	GCNNNNNNNGC	2 cut(s)	375, 423
BstNI	CCWGG	1 cut(s)	29
BstNSI	RCATGY	1 cut(s)	113
BstPI	GGTNACC	1 cut(s)	575
BstSCI	CCNGG	3 cut(s)	27, 542, 571
BstUI	CGCG	3 cut(s)	582, 584, 858
BstX2I	RGATCY	1 cut(s)	398
BstXI	CCANNNNNNTGG	1 cut(s)	846
BstYI	RGATCY	1 cut(s)	398
BsuRI	GGCC	1 cut(s)	426
BtgI	CCRYGG	2 cut(s)	485, 839
BtsCI	GGATG	3 cut(s)	70, 189, 216
BtsI	GCAGTG	1 cut(s)	685
BtsIMutI	CAGTG	3 cut(s)	166, 685, 930
BveI	ACCTGC	1 cut(s)	441
Cac8I	GCNNGC	9 cut(s)	424, 438, 584, 848, 852, 856, 882, 886, 919
CciI	TCATGA	1 cut(s)	232
CfoI	GCGC	2 cut(s)	584, 586
Cfr13I	GGNCC	2 cut(s)	424, 500
CsiI	ACCWGGT	1 cut(s)	27
Csp6I	GTAC	3 cut(s)	644, 682, 860
CspCI	CAANNNNNGTGG	2 cut(s)	775, 810
CviAII	CATG	3 cut(s)	110, 175, 233
CviQI	GTAC	3 cut(s)	644, 682, 860
DdeI	CTNAG	1 cut(s)	158
DpnI	GATC	5 cut(s)	57, 198, 337, 400, 629
DpnII	GATC	5 cut(s)	55, 196, 335, 398, 627
DraI	TTTAAA	1 cut(s)	268
DraIII	CACNNNGTG	1 cut(s)	161
Eam1104I	CTCTTC	1 cut(s)	145
EarI	CTCTTC	1 cut(s)	145
Eco24I	GRGCYC	1 cut(s)	380
Eco47I	GGWCC	1 cut(s)	500
Eco91I	GGTNACC	1 cut(s)	575
EcoO109I	RGGNCCY	1 cut(s)	500
EcoO65I	GGTNACC	1 cut(s)	575
EcoRII	CCWGG	1 cut(s)	27
EcoT38I	GRGCYC	1 cut(s)	380
FaeI	CATG	3 cut(s)	113, 178, 236
FaiI	YATR	8 cut(s)	21, 48, 111, 176, 204, 225, 234, 364
FatI	CATG	3 cut(s)	109, 174, 232
FauI	CCCGC	2 cut(s)	415, 863
FokI	GGATG	3 cut(s)	77, 196, 203
FriOI	GRGCYC	1 cut(s)	380
FspBI	CTAG	2 cut(s)	593, 656
GlaI	GCGC	2 cut(s)	583, 585
GsuI	CTGGAG	1 cut(s)	767
HaeIII	GGCC	1 cut(s)	426
HapII	CCGG	3 cut(s)	544, 573, 635
HhaI	GCGC	2 cut(s)	584, 586
Hin1II	CATG	3 cut(s)	113, 178, 236
Hin6I	GCGC	2 cut(s)	582, 584
HinP1I	GCGC	2 cut(s)	582, 584
HinfI	GANTC	5 cut(s)	73, 206, 257, 698, 818
HpaII	CCGG	3 cut(s)	544, 573, 635
HphI	GGTGA	2 cut(s)	587, 614
Hpy166II	GTNNAC	3 cut(s)	489, 786, 862
Hpy188I	TCNGA	3 cut(s)	78, 243, 740
Hpy188III	TCNNGA	1 cut(s)	233
Hpy8I	GTNNAC	3 cut(s)	489, 786, 862
Hpy99I	CGWCG	1 cut(s)	830
HpyAV	CCTTC	2 cut(s)	564, 735
HpyCH4III	ACNGT	4 cut(s)	213, 302, 643, 843
HpyCH4V	TGCA	6 cut(s)	4, 92, 170, 307, 834, 884
HpyF10VI	GCNNNNNNNGC	2 cut(s)	375, 423
HpyF3I	CTNAG	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	113, 178, 236
HspAI	GCGC	2 cut(s)	582, 584
Kzo9I	GATC	5 cut(s)	55, 196, 335, 398, 627
LguI	GCTCTTC	1 cut(s)	145
LmnI	GCTCC	2 cut(s)	546, 901
LweI	GCATC	1 cut(s)	628
MabI	ACCWGGT	1 cut(s)	27
MaeI	CTAG	2 cut(s)	593, 656
MaeIII	GTNAC	3 cut(s)	207, 466, 575
MalI	GATC	5 cut(s)	57, 198, 337, 400, 629
MboI	GATC	5 cut(s)	55, 196, 335, 398, 627
MboII	GAAGA	4 cut(s)	162, 763, 809, 812
MflI	RGATCY	1 cut(s)	398
MhlI	GDGCHC	3 cut(s)	157, 380, 777
MluCI	AATT	1 cut(s)	387
MlyI	GAGTC	3 cut(s)	215, 251, 692
MmeI	TCCRAC	2 cut(s)	244, 268
MseI	TTAA	1 cut(s)	267
MspA1I	CMGCKG	1 cut(s)	422
MspI	CCGG	3 cut(s)	544, 573, 635
MspR9I	CCNGG	3 cut(s)	29, 544, 573
Mva1269I	GAATGC	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	29
MvnI	CGCG	3 cut(s)	582, 584, 858
MwoI	GCNNNNNNNGC	2 cut(s)	375, 423
NciI	CCSGG	2 cut(s)	544, 573
NdeII	GATC	5 cut(s)	55, 196, 335, 398, 627
NlaIII	CATG	3 cut(s)	113, 178, 236
NlaIV	GGNNCC	1 cut(s)	903
NmuCI	GTSAC	2 cut(s)	207, 575
NspI	RCATGY	1 cut(s)	113
PagI	TCATGA	1 cut(s)	232
PauI	GCGCGC	1 cut(s)	582
PciI	ACATGT	1 cut(s)	109
PciSI	GCTCTTC	1 cut(s)	145
PcsI	WCGNNNNNNNCGW	1 cut(s)	482
PctI	GAATGC	1 cut(s)	297
PfeI	GAWTC	2 cut(s)	73, 818
PflMI	CCANNNNNTGG	1 cut(s)	486
PleI	GAGTC	3 cut(s)	214, 251, 692
PpsI	GAGTC	3 cut(s)	214, 251, 692
PpuMI	RGGWCCY	1 cut(s)	500
PscI	ACATGT	1 cut(s)	109
Psp5II	RGGWCCY	1 cut(s)	500
Psp6I	CCWGG	1 cut(s)	27
PspEI	GGTNACC	1 cut(s)	575
PspGI	CCWGG	1 cut(s)	27
PspN4I	GGNNCC	1 cut(s)	903
PspPI	GGNCC	2 cut(s)	424, 500
PspPPI	RGGWCCY	1 cut(s)	500
PsuI	RGATCY	1 cut(s)	398
PteI	GCGCGC	1 cut(s)	582
RsaI	GTAC	3 cut(s)	645, 683, 861
RsaNI	GTAC	3 cut(s)	644, 682, 860
SapI	GCTCTTC	1 cut(s)	145
SaqAI	TTAA	1 cut(s)	267
Sau3AI	GATC	5 cut(s)	55, 196, 335, 398, 627
Sau96I	GGNCC	2 cut(s)	424, 500
SchI	GAGTC	3 cut(s)	215, 251, 692
ScrFI	CCNGG	3 cut(s)	29, 544, 573
SduI	GDGCHC	3 cut(s)	157, 380, 777
SexAI	ACCWGGT	1 cut(s)	27
SfaNI	GCATC	1 cut(s)	628
SinI	GGWCC	1 cut(s)	500
Sse9I	AATT	1 cut(s)	387
SsiI	CCGC	3 cut(s)	422, 580, 856
SspI	AATATT	1 cut(s)	283
SspMI	CTAG	2 cut(s)	593, 656
StyD4I	CCNGG	3 cut(s)	27, 542, 571
TaaI	ACNGT	4 cut(s)	213, 302, 643, 843
TaqI	TCGA	3 cut(s)	54, 117, 825
TasI	AATT	1 cut(s)	387
TfiI	GAWTC	2 cut(s)	73, 818
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	3 cut(s)	166, 692, 930
TseFI	GTSAC	2 cut(s)	207, 575
Tsp45I	GTSAC	2 cut(s)	207, 575
TspDTI	ATGAA	3 cut(s)	205, 221, 249
TspGWI	ACGGA	1 cut(s)	474
TspRI	CASTG	3 cut(s)	166, 692, 930
Van91I	CCANNNNNTGG	1 cut(s)	486
VpaK11BI	GGWCC	1 cut(s)	500
XceI	RCATGY	1 cut(s)	113
XspI	CTAG	2 cut(s)	593, 656

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.