Rh4DG274500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0018216
Physical Location & Seq
Reverse (-)
49380911 .. 49381135
225 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG274500.1

Sequence Viewer

Length: 225 bp
ATGAAACCCAGATACCCATGTACCCAACGAAATCCGATTGATCCTGAGCTTCGTGGTGTTGCTGACCTCGAACGACTAGACGCCGACAGATTCCCATCCAATAGCCGCTGCAAGGTAGGTCCAGTGTTGAAGGTGAGCTTCTCGTCCCCTGAGCGGTGCTGGAAGCGAGACTCCTCGACAGAGGAACTCTGGCGAGGTGAGGAACTGGTAAAGGTTTTGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

8.59

Weight (kDa)

8.57

Isoelectric Point (pI)

53.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 2 cut(s) 106, 154
AclWI GGATC 1 cut(s) 35
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 1 cut(s) 22
AfiI CCNNNNNNNGG 2 cut(s) 112, 153
AgsI TTSAA 2 cut(s) 130, 220
AluBI AGCT 2 cut(s) 49, 138
AluI AGCT 2 cut(s) 49, 138
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 1 cut(s) 35
ApeKI GCWGC 1 cut(s) 108
AspS9I GGNCC 1 cut(s) 119
AsuHPI GGTGA 2 cut(s) 145, 209
AvaII GGWCC 1 cut(s) 119
BaeI ACNNNNGTAYC 2 cut(s) 37, 37
BbvI GCAGC 1 cut(s) 95
BccI CCATC 1 cut(s) 103
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 77
BisI GCNGC 2 cut(s) 106, 109
BlsI GCNGC 2 cut(s) 107, 110
Bme18I GGWCC 1 cut(s) 119
BmgT120I GGNCC 1 cut(s) 119
Bpu10I CCTNAGC 2 cut(s) 45, 150
BsaBI GATNNNNATC 1 cut(s) 94
BsaHI GRCGYC 1 cut(s) 81
Bsc4I CCNNNNNNNGG 2 cut(s) 112, 153
Bse1I ACTGG 2 cut(s) 122, 210
Bse8I GATNNNNATC 1 cut(s) 94
BseGI GGATG 1 cut(s) 95
BseJI GATNNNNATC 1 cut(s) 94
BseLI CCNNNNNNNGG 2 cut(s) 112, 153
BseMII CTCAG 2 cut(s) 36, 141
BseNI ACTGG 2 cut(s) 122, 210
BseRI GAGGAG 1 cut(s) 163
BseXI GCAGC 1 cut(s) 95
BslFI GGGAC 1 cut(s) 130
BslI CCNNNNNNNGG 2 cut(s) 112, 153
BsmAI GTCTC 1 cut(s) 162
BsmFI GGGAC 1 cut(s) 130
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 2 cut(s) 106, 154
BspCNI CTCAG 2 cut(s) 37, 142
BspPI GGATC 1 cut(s) 35
BsrBI CCGCTC 1 cut(s) 154
BsrI ACTGG 2 cut(s) 122, 210
BssMI GATC 1 cut(s) 40
BssNI GRCGYC 1 cut(s) 81
BstACI GRCGYC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 45, 150
BstF5I GGATG 1 cut(s) 95
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 1 cut(s) 40
BstV1I GCAGC 1 cut(s) 95
BtsCI GGATG 1 cut(s) 95
BtsIMutI CAGTG 1 cut(s) 129
Cfr13I GGNCC 1 cut(s) 119
CseI GACGC 1 cut(s) 89
Csp6I GTAC 1 cut(s) 21
CviAII CATG 1 cut(s) 18
CviJI RGCY 3 cut(s) 49, 105, 138
CviKI_1 RGCY 3 cut(s) 49, 105, 138
CviQI GTAC 1 cut(s) 21
DdeI CTNAG 2 cut(s) 45, 150
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 119
FaeI CATG 1 cut(s) 21
FaiI YATR 1 cut(s) 19
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 130
FatI CATG 1 cut(s) 17
Fnu4HI GCNGC 2 cut(s) 106, 109
FokI GGATG 1 cut(s) 82
Fsp4HI GCNGC 2 cut(s) 106, 109
FspBI CTAG 1 cut(s) 77
GluI GCNGC 2 cut(s) 106, 109
HgaI GACGC 1 cut(s) 89
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 21
HinfI GANTC 2 cut(s) 90, 170
HphI GGTGA 2 cut(s) 145, 209
Hpy188I TCNGA 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 124
HpyCH4V TGCA 1 cut(s) 111
HpyF3I CTNAG 2 cut(s) 45, 150
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 21
Kzo9I GATC 1 cut(s) 40
LpnPI CCDG 7 cut(s) 22, 57, 135, 145, 162, 175, 191
Lsp1109I GCAGC 1 cut(s) 95
MaeI CTAG 1 cut(s) 77
MalI GATC 1 cut(s) 42
MbiI CCGCTC 1 cut(s) 154
MboI GATC 1 cut(s) 40
MluCI AATT 1 cut(s) 220
MlyI GAGTC 1 cut(s) 164
MnlI CCTC 5 cut(s) 77, 175, 184, 188, 193
MspA1I CMGCKG 1 cut(s) 108
NdeII GATC 1 cut(s) 40
NlaIII CATG 1 cut(s) 21
PfeI GAWTC 1 cut(s) 90
PkrI GCNGC 2 cut(s) 107, 110
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
PspPI GGNCC 1 cut(s) 119
RsaI GTAC 1 cut(s) 22
RsaNI GTAC 1 cut(s) 21
SatI GCNGC 2 cut(s) 106, 109
Sau3AI GATC 1 cut(s) 40
Sau96I GGNCC 1 cut(s) 119
SchI GAGTC 1 cut(s) 164
SetI ASST 8 cut(s) 51, 69, 117, 121, 135, 140, 199, 216
SinI GGWCC 1 cut(s) 119
Sse9I AATT 1 cut(s) 220
SsiI CCGC 2 cut(s) 106, 154
SspMI CTAG 1 cut(s) 77
TaqI TCGA 2 cut(s) 69, 176
TasI AATT 1 cut(s) 220
TauI GCSGC 1 cut(s) 108
TfiI GAWTC 1 cut(s) 90
TscAI CASTG 1 cut(s) 129
TseI GCWGC 1 cut(s) 108
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 129
VpaK11BI GGWCC 1 cut(s) 119
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.