Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006638.1

Orthogroup ID

OG0018216

Physical Location & Seq

Genomic Coordinates Forward (+)

19169 .. 20566

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006638.1_g000011.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

atgacatcgtttcaagcgatcggcaagaagtcctttctcggaaggctagagaagaaccttgtggcgtggttggtgctctcctcatccgcaacgcttgaagaagaagtcaggtcaaaggactcccccgacaattgcaccccacggtgctggcacgcccgcacacactctcaaaagagacagtttgcacgccaactggttttggagccaaacagaacctttagctcagtcaaccttcatgtccttgccacaccgcccagcctcaacttgcaaacaaataaccttctccgcgaagtaggggccctggccacacgcgaccaactcaacgaagcactctcactcttctatactcttcaaccgccaccgtctcaaactcactgcaaccaaacctacgccactctcttccacgcatgcgctcgccaccaaccccattactcccccgacctctttgtcaccaaccacctcatcagcatgtgcgccaaattcggctactcagaccatgcccaccaactgttcgatgaaatgcccacgtcacctggaccgttctcatttccttgtctaagcaagtttttgatggaattgatttttgtgatgttgtttcgtggaactggaacacaatgctcaaggcttatgccttgtgtggacaagctgcatttttcacatatggacattaaacctgattctgctacctttgtttctctcctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2 PPR_3

Protein Analysis

234

Amino Acids

26.48

Weight (kDa)

8.44

Isoelectric Point (pI)

47.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018216)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001038 RLG00000012682
rosa_multiflora	Rmu_sc0001935.1_g000003 Rmu_sc0001955.1_g000030 Rmu_sc0006638.1_g000011
rosa_samantha	Rh3AG281000 Rh3BG316800 Rh4DG274500 Rh6BG300600 Rh6CG296000 Rh6DG287800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	446
AccII	CGCG	2 cut(s)	288, 312
AciI	CCGC	5 cut(s)	87, 157, 251, 286, 356
AcoI	YGGCCR	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	479
AgsI	TTSAA	3 cut(s)	14, 98, 353
AjiI	CACGTC	1 cut(s)	528
AjnI	CCWGG	2 cut(s)	300, 532
AluBI	AGCT	2 cut(s)	222, 646
AluI	AGCT	2 cut(s)	222, 646
Alw21I	GWGCWC	1 cut(s)	78
Alw26I	GTCTC	2 cut(s)	169, 369
AoxI	GGCC	2 cut(s)	297, 303
ApaI	GGGCCC	1 cut(s)	301
ApeKI	GCWGC	1 cut(s)	646
ApoI	RAATTY	1 cut(s)	479
AspLEI	GCGC	2 cut(s)	413, 476
AspS9I	GGNCC	3 cut(s)	297, 298, 536
AsuHPI	GGTGA	2 cut(s)	442, 522
AvaII	GGWCC	1 cut(s)	536
BaeGI	GKGCMC	1 cut(s)	301
BalI	TGGCCA	1 cut(s)	305
BanII	GRGCYC	1 cut(s)	301
Bbv12I	GWGCWC	1 cut(s)	78
BbvI	GCAGC	1 cut(s)	633
BccI	CCATC	1 cut(s)	565
BciT130I	CCWGG	2 cut(s)	302, 534
BcoDI	GTCTC	2 cut(s)	169, 369
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	1 cut(s)	647
BlsI	GCNGC	1 cut(s)	648
Bme1390I	CCNGG	2 cut(s)	302, 534
Bme18I	GGWCC	1 cut(s)	536
BmgBI	CACGTC	1 cut(s)	528
BmgT120I	GGNCC	3 cut(s)	297, 298, 536
BmiI	GGNNCC	3 cut(s)	204, 298, 299
BmrFI	CCNGG	2 cut(s)	302, 534
BpuEI	CTTGAG	1 cut(s)	604
BsaJI	CCNNGG	2 cut(s)	140, 300
Bse1I	ACTGG	2 cut(s)	198, 610
BseBI	CCWGG	2 cut(s)	302, 534
BseDI	CCNNGG	2 cut(s)	140, 300
BseGI	GGATG	1 cut(s)	83
BseMII	CTCAG	2 cut(s)	237, 504
BseNI	ACTGG	2 cut(s)	198, 610
BseRI	GAGGAG	2 cut(s)	70, 689
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	633
BseYI	CCCAGC	1 cut(s)	254
Bsh1236I	CGCG	2 cut(s)	288, 312
Bsh1285I	CGRYCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	299, 305
BsiEI	CGRYCG	1 cut(s)	21
BsiHKAI	GWGCWC	1 cut(s)	78
BsmAI	GTCTC	2 cut(s)	169, 369
BsmBI	CGTCTC	1 cut(s)	369
BsnI	GGCC	2 cut(s)	299, 305
Bsp120I	GGGCCC	1 cut(s)	297
Bsp1286I	GDGCHC	2 cut(s)	78, 301
Bsp143I	GATC	1 cut(s)	18
BspACI	CCGC	5 cut(s)	87, 157, 251, 286, 356
BspANI	GGCC	2 cut(s)	299, 305
BspCNI	CTCAG	2 cut(s)	236, 503
BspFNI	CGCG	2 cut(s)	288, 312
BspLI	GGNNCC	3 cut(s)	204, 298, 299
BsrI	ACTGG	2 cut(s)	198, 610
BssECI	CCNNGG	2 cut(s)	140, 300
BssMI	GATC	1 cut(s)	18
Bst2UI	CCWGG	2 cut(s)	302, 534
Bst4CI	ACNGT	5 cut(s)	144, 180, 363, 510, 540
Bst6I	CTCTTC	3 cut(s)	344, 354, 404
BstC8I	GCNNGC	6 cut(s)	149, 153, 157, 187, 409, 415
BstDEI	CTNAG	3 cut(s)	223, 490, 557
BstDSI	CCRYGG	1 cut(s)	140
BstF5I	GGATG	1 cut(s)	83
BstFNI	CGCG	2 cut(s)	288, 312
BstHHI	GCGC	2 cut(s)	413, 476
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	2 cut(s)	169, 369
BstMBI	GATC	1 cut(s)	18
BstMCI	CGRYCG	1 cut(s)	21
BstNI	CCWGG	2 cut(s)	302, 534
BstNSI	RCATGY	2 cut(s)	411, 472
BstSCI	CCNGG	2 cut(s)	300, 532
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	2 cut(s)	288, 312
BstV1I	GCAGC	1 cut(s)	633
BstXI	CCANNNNNNTGG	1 cut(s)	147
BsuRI	GGCC	2 cut(s)	299, 305
BtgI	CCRYGG	1 cut(s)	140
BtrI	CACGTC	1 cut(s)	528
BtsCI	GGATG	1 cut(s)	83
BtsI	GCAGTG	1 cut(s)	373
BtsIMutI	CAGTG	1 cut(s)	373
Cac8I	GCNNGC	6 cut(s)	149, 153, 157, 187, 409, 415
CfoI	GCGC	2 cut(s)	413, 476
Cfr13I	GGNCC	3 cut(s)	297, 298, 536
CviAII	CATG	4 cut(s)	236, 408, 469, 497
CviJI	RGCY	9 cut(s)	46, 205, 222, 258, 299, 305, 486, 625, 646
CviKI_1	RGCY	9 cut(s)	46, 205, 222, 258, 299, 305, 486, 625, 646
DdeI	CTNAG	3 cut(s)	223, 490, 557
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
DrdI	GACNNNNNNGTC	1 cut(s)	446
DseDI	GACNNNNNNGTC	1 cut(s)	446
EaeI	YGGCCR	1 cut(s)	303
Eam1104I	CTCTTC	3 cut(s)	344, 354, 404
EarI	CTCTTC	3 cut(s)	344, 354, 404
Eco24I	GRGCYC	1 cut(s)	301
Eco47I	GGWCC	1 cut(s)	536
EcoO109I	RGGNCCY	2 cut(s)	297, 298
EcoRII	CCWGG	2 cut(s)	300, 532
EcoT38I	GRGCYC	1 cut(s)	301
Esp3I	CGTCTC	1 cut(s)	369
FaeI	CATG	4 cut(s)	239, 411, 472, 500
FaiI	YATR	8 cut(s)	237, 345, 409, 470, 498, 629, 660, 662
FalI	AAGNNNNNCTT	2 cut(s)	17, 49
FatI	CATG	4 cut(s)	235, 407, 468, 496
FauI	CCCGC	1 cut(s)	164
FauNDI	CATATG	1 cut(s)	660
Fnu4HI	GCNGC	1 cut(s)	647
FokI	GGATG	1 cut(s)	70
FriOI	GRGCYC	1 cut(s)	301
Fsp4HI	GCNGC	1 cut(s)	647
FspBI	CTAG	1 cut(s)	47
GlaI	GCGC	2 cut(s)	412, 475
GluI	GCNGC	1 cut(s)	647
GsaI	CCCAGC	1 cut(s)	258
HaeIII	GGCC	2 cut(s)	299, 305
HhaI	GCGC	2 cut(s)	413, 476
Hin1II	CATG	4 cut(s)	239, 411, 472, 500
Hin6I	GCGC	2 cut(s)	411, 474
HinP1I	GCGC	2 cut(s)	411, 474
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HinfI	GANTC	2 cut(s)	119, 677
HphI	GGTGA	2 cut(s)	442, 522
Hpy166II	GTNNAC	2 cut(s)	229, 640
Hpy188I	TCNGA	3 cut(s)	41, 493, 704
Hpy8I	GTNNAC	2 cut(s)	229, 640
HpyAV	CCTTC	3 cut(s)	36, 242, 290
HpyCH4III	ACNGT	5 cut(s)	144, 180, 363, 510, 540
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	5 cut(s)	135, 185, 268, 378, 649
HpyF3I	CTNAG	3 cut(s)	223, 490, 557
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	4 cut(s)	239, 411, 472, 500
HspAI	GCGC	2 cut(s)	411, 474
Kzo9I	GATC	1 cut(s)	18
LmnI	GCTCC	1 cut(s)	202
Lsp1109I	GCAGC	1 cut(s)	633
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	2 cut(s)	448, 528
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MboII	GAAGA	6 cut(s)	64, 110, 113, 331, 341, 391
MfeI	CAATTG	1 cut(s)	130
MhlI	GDGCHC	2 cut(s)	78, 301
MlsI	TGGCCA	1 cut(s)	305
MluCI	AATT	3 cut(s)	130, 479, 575
MluNI	TGGCCA	1 cut(s)	305
MlyI	GAGTC	1 cut(s)	113
MnlI	CCTC	4 cut(s)	91, 269, 452, 470
Mox20I	TGGCCA	1 cut(s)	305
MscI	TGGCCA	1 cut(s)	305
MseI	TTAA	1 cut(s)	669
MslI	CAYNNNNRTG	1 cut(s)	467
Msp20I	TGGCCA	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	302, 534
MunI	CAATTG	1 cut(s)	130
MvaI	CCWGG	2 cut(s)	302, 534
MvnI	CGCG	2 cut(s)	288, 312
NdeI	CATATG	1 cut(s)	660
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	4 cut(s)	239, 411, 472, 500
NlaIV	GGNNCC	3 cut(s)	204, 298, 299
NmuCI	GTSAC	2 cut(s)	448, 528
NspI	RCATGY	2 cut(s)	411, 472
PaeI	GCATGC	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	14
PfeI	GAWTC	1 cut(s)	677
PkrI	GCNGC	1 cut(s)	648
Ple19I	CGATCG	1 cut(s)	21
PleI	GAGTC	1 cut(s)	113
PpsI	GAGTC	1 cut(s)	113
Psp6I	CCWGG	2 cut(s)	300, 532
PspFI	CCCAGC	1 cut(s)	254
PspGI	CCWGG	2 cut(s)	300, 532
PspN4I	GGNNCC	3 cut(s)	204, 298, 299
PspOMI	GGGCCC	1 cut(s)	297
PspPI	GGNCC	3 cut(s)	297, 298, 536
PvuI	CGATCG	1 cut(s)	21
RseI	CAYNNNNRTG	1 cut(s)	467
SaqAI	TTAA	1 cut(s)	669
SatI	GCNGC	1 cut(s)	647
Sau3AI	GATC	1 cut(s)	18
Sau96I	GGNCC	3 cut(s)	297, 298, 536
SchI	GAGTC	1 cut(s)	113
ScrFI	CCNGG	2 cut(s)	302, 534
SduI	GDGCHC	2 cut(s)	78, 301
SinI	GGWCC	1 cut(s)	536
SmiMI	CAYNNNNRTG	1 cut(s)	467
SmlI	CTYRAG	1 cut(s)	619
SmoI	CTYRAG	1 cut(s)	619
SphI	GCATGC	1 cut(s)	411
Sse9I	AATT	3 cut(s)	130, 479, 575
SsiI	CCGC	5 cut(s)	87, 157, 251, 286, 356
SspMI	CTAG	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	300, 532
TaaI	ACNGT	5 cut(s)	144, 180, 363, 510, 540
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	1 cut(s)	513
TasI	AATT	3 cut(s)	130, 479, 575
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	1 cut(s)	669
Tru9I	TTAA	1 cut(s)	669
TscAI	CASTG	1 cut(s)	380
TseFI	GTSAC	2 cut(s)	448, 528
TseI	GCWGC	1 cut(s)	646
Tsp45I	GTSAC	2 cut(s)	448, 528
TspDTI	ATGAA	2 cut(s)	224, 531
TspRI	CASTG	1 cut(s)	380
VpaK11BI	GGWCC	1 cut(s)	536
XapI	RAATTY	1 cut(s)	479
XceI	RCATGY	2 cut(s)	411, 472
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.