Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0018216

Physical Location & Seq

Genomic Coordinates Reverse (-)

21287108 .. 21288713

Gene Structure 1606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012682

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGAGCAATTTGTTATGGCTCGATCCAAAGATGCAAACTTCACCGGTCGATCTTGAGCTTCGTGGTGTCGCCGACAGATTCCTAGCCAATAGCGCCGGCGAGGTAAGTGCAGTTAGTGTAGAAGGTGAGCTTCTCGTCCAGGGAGCGGAGCTGGCGGTGAGCCTTCTTGATAAAGAGGAACTCCGGCGAGGTGGGGAGCTGGTTAAGATTTTGAATTGGATCCTAGAGATCCTGCAACAAGCTATAAAGGCACAATTTGATTCGCCATTGTCGCCTGAGATTCAAACTGGATTTGATTCGGTTTGGGGTTTTGGATGTGATCCTTGTGAAATTGGAGACAAATGGCTTACCTTAGGAGAGCGGATTTGGACGGAGATGGCAGGATTAGTGGTGCTGAGGCTGTTGCTTCCTTTCAGGGCACCAATTTGCCCAAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

146

Amino Acids

16.02

Weight (kDa)

4.44

Isoelectric Point (pI)

52.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018216)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000001038 RLG00000012682
rosa_multiflora	Rmu_sc0001935.1_g000003 Rmu_sc0001955.1_g000030 Rmu_sc0006638.1_g000011
rosa_samantha	Rh3AG281000 Rh3BG316800 Rh4DG274500 Rh6BG300600 Rh6CG296000 Rh6DG287800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	418
AccBSI	CCGCTC	2 cut(s)	146, 361
AciI	CCGC	3 cut(s)	146, 155, 361
AclWI	GGATC	5 cut(s)	17, 214, 223, 227, 314
AfiI	CCNNNNNNNGG	1 cut(s)	145
AgeI	ACCGGT	1 cut(s)	43
AgsI	TTSAA	2 cut(s)	214, 284
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	5 cut(s)	58, 130, 151, 199, 242
AluI	AGCT	5 cut(s)	58, 130, 151, 199, 242
Alw26I	GTCTC	1 cut(s)	330
AlwI	GGATC	5 cut(s)	17, 214, 223, 227, 314
AsiGI	ACCGGT	1 cut(s)	43
AspLEI	GCGC	1 cut(s)	95
AsuHPI	GGTGA	3 cut(s)	33, 137, 169
AxyI	CCTNAGG	1 cut(s)	352
BaeGI	GKGCMC	1 cut(s)	421
BamHI	GGATCC	1 cut(s)	219
BanI	GGYRCC	1 cut(s)	418
BbvCI	CCTCAGC	1 cut(s)	395
BccI	CCATC	1 cut(s)	370
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	1 cut(s)	330
BfaI	CTAG	3 cut(s)	83, 224, 436
BfoI	RGCGCY	1 cut(s)	96
Bme1390I	CCNGG	1 cut(s)	140
BmiI	GGNNCC	2 cut(s)	221, 420
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	1 cut(s)	21
Bpu10I	CCTNAGC	1 cut(s)	395
BpuEI	CTTGAG	1 cut(s)	74
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	43
Bsc4I	CCNNNNNNNGG	1 cut(s)	145
Bse118I	RCCGGY	2 cut(s)	43, 95
Bse1I	ACTGG	1 cut(s)	292
Bse21I	CCTNAGG	1 cut(s)	352
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	320
BseLI	CCNNNNNNNGG	1 cut(s)	145
BseMII	CTCAG	2 cut(s)	267, 386
BseNI	ACTGG	1 cut(s)	292
BseSI	GKGCMC	1 cut(s)	421
BsgI	GTGCAG	1 cut(s)	129
Bsh1285I	CGRYCG	1 cut(s)	48
BshNI	GGYRCC	1 cut(s)	418
BshTI	ACCGGT	1 cut(s)	43
BsiEI	CGRYCG	1 cut(s)	48
BsiSI	CCGG	3 cut(s)	44, 96, 184
BslI	CCNNNNNNNGG	1 cut(s)	145
BsmAI	GTCTC	1 cut(s)	330
Bsp1286I	GDGCHC	1 cut(s)	421
Bsp143I	GATC	5 cut(s)	22, 49, 219, 228, 319
BspACI	CCGC	3 cut(s)	146, 155, 361
BspCNI	CTCAG	2 cut(s)	268, 387
BspLI	GGNNCC	2 cut(s)	221, 420
BspPI	GGATC	5 cut(s)	17, 214, 223, 227, 314
BspT107I	GGYRCC	1 cut(s)	418
BsrBI	CCGCTC	2 cut(s)	146, 361
BsrFI	RCCGGY	2 cut(s)	43, 95
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	2 cut(s)	43, 95
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	5 cut(s)	22, 49, 219, 228, 319
Bst2UI	CCWGG	1 cut(s)	140
BstC8I	GCNNGC	2 cut(s)	97, 153
BstDEI	CTNAG	3 cut(s)	276, 352, 395
BstF5I	GGATG	1 cut(s)	320
BstH2I	RGCGCY	1 cut(s)	96
BstHHI	GCGC	1 cut(s)	95
BstKTI	GATC	5 cut(s)	25, 52, 222, 231, 322
BstMAI	GTCTC	1 cut(s)	330
BstMBI	GATC	5 cut(s)	22, 49, 219, 228, 319
BstMCI	CGRYCG	1 cut(s)	48
BstMWI	GCNNNNNNNGC	4 cut(s)	92, 152, 248, 271
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstSLI	GKGCMC	1 cut(s)	421
BstX2I	RGATCY	2 cut(s)	219, 228
BstYI	RGATCY	2 cut(s)	219, 228
Bsu36I	CCTNAGG	1 cut(s)	352
BtsCI	GGATG	1 cut(s)	320
Cac8I	GCNNGC	2 cut(s)	97, 153
CfoI	GCGC	1 cut(s)	95
Cfr10I	RCCGGY	2 cut(s)	43, 95
CspAI	ACCGGT	1 cut(s)	43
DdeI	CTNAG	3 cut(s)	276, 352, 395
DpnI	GATC	5 cut(s)	24, 51, 221, 230, 321
DpnII	GATC	5 cut(s)	22, 49, 219, 228, 319
Eco81I	CCTNAGG	1 cut(s)	352
EcoRII	CCWGG	1 cut(s)	138
FaiI	YATR	2 cut(s)	16, 245
FalI	AAGNNNNNCTT	2 cut(s)	114, 146
FokI	GGATG	1 cut(s)	327
FspBI	CTAG	3 cut(s)	83, 224, 436
GlaI	GCGC	1 cut(s)	94
HaeII	RGCGCY	1 cut(s)	96
HapII	CCGG	3 cut(s)	44, 96, 184
HhaI	GCGC	1 cut(s)	95
Hin6I	GCGC	1 cut(s)	93
HinP1I	GCGC	1 cut(s)	93
HinfI	GANTC	4 cut(s)	78, 260, 280, 296
HpaII	CCGG	3 cut(s)	44, 96, 184
HphI	GGTGA	3 cut(s)	33, 137, 169
Hpy188III	TCNNGA	2 cut(s)	53, 167
HpyAV	CCTTC	2 cut(s)	116, 173
HpyCH4V	TGCA	3 cut(s)	34, 110, 235
HpyF10VI	GCNNNNNNNGC	4 cut(s)	92, 152, 248, 271
HpyF3I	CTNAG	3 cut(s)	276, 352, 395
HspAI	GCGC	1 cut(s)	93
KroI	GCCGGC	1 cut(s)	95
KroNI	GCCGGC	1 cut(s)	97
Kzo9I	GATC	5 cut(s)	22, 49, 219, 228, 319
LmnI	GCTCC	3 cut(s)	143, 148, 196
LweI	GCATC	1 cut(s)	21
MaeI	CTAG	3 cut(s)	83, 224, 436
MalI	GATC	5 cut(s)	24, 51, 221, 230, 321
MbiI	CCGCTC	2 cut(s)	146, 361
MboI	GATC	5 cut(s)	22, 49, 219, 228, 319
MflI	RGATCY	2 cut(s)	219, 228
MhlI	GDGCHC	1 cut(s)	421
MluCI	AATT	5 cut(s)	7, 214, 254, 330, 423
MnlI	CCTC	4 cut(s)	94, 169, 182, 390
MreI	CGCCGGCG	1 cut(s)	95
MroNI	GCCGGC	1 cut(s)	95
MseI	TTAA	1 cut(s)	204
MspI	CCGG	3 cut(s)	44, 96, 184
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	4 cut(s)	92, 152, 248, 271
NaeI	GCCGGC	1 cut(s)	97
NdeII	GATC	5 cut(s)	22, 49, 219, 228, 319
NgoMIV	GCCGGC	1 cut(s)	95
NlaIV	GGNNCC	2 cut(s)	221, 420
PdiI	GCCGGC	1 cut(s)	97
PfeI	GAWTC	4 cut(s)	78, 260, 280, 296
PinAI	ACCGGT	1 cut(s)	43
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	221, 420
PsuI	RGATCY	2 cut(s)	219, 228
SaqAI	TTAA	1 cut(s)	204
Sau3AI	GATC	5 cut(s)	22, 49, 219, 228, 319
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	421
SetI	ASST	9 cut(s)	60, 105, 127, 132, 153, 193, 201, 244, 353
SfaNI	GCATC	1 cut(s)	21
SgrAI	CRCCGGYG	1 cut(s)	95
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
Sse9I	AATT	5 cut(s)	7, 214, 254, 330, 423
SsiI	CCGC	3 cut(s)	146, 155, 361
SspMI	CTAG	3 cut(s)	83, 224, 436
StyD4I	CCNGG	1 cut(s)	138
TaqI	TCGA	2 cut(s)	21, 48
TasI	AATT	5 cut(s)	7, 214, 254, 330, 423
TfiI	GAWTC	4 cut(s)	78, 260, 280, 296
Tru1I	TTAA	1 cut(s)	204
Tru9I	TTAA	1 cut(s)	204
TspGWI	ACGGA	1 cut(s)	386
XspI	CTAG	3 cut(s)	83, 224, 436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.