RLG00000001274

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016862
Physical Location & Seq
Forward (+)
13292539 .. 13295115
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001274

Sequence Viewer

Length: 2295 bp
ATGGCTTCTCTACCTTCAGTTGCTGTTAGTGGCAATATCAAGCTTGACCAAGACTTCAGAAAACACCCCACAAGTTTTATTTCTTCCGAAAAGAGTGGAATTGCAAACGTGTCTTATCAGAAAAGTCAGACCATCGCAAATTCGGATGGAAGTTCAGAACCCAGGTCTCTGGACTTCCGAGAAGCTCTTGTGATGATTAGAGAGGGTTCCAAGGTTGAGTCCTCTGACTATGTCCCTCTCTTGCAAGAATGTATAGACAGGAATTCTGCTTCCGATGCACAAGTTGTGCATGGCCACATCATTAAGACAGGATGCCACCAAGATTTGTTTGTCACAACTTTCCTTGTCAATGTTTATGCAAAGTGTAGAATCATGGAAAATGCTCGTAAAGTTTTTGACAAATTGCCTAGAAGAAATGTTGTTTCGTGGACAGCTTTGATGTCGGGTTATGTTCACAATTCGCAGCCAGAACTTGCCATTCGGGTTTTCCTAGAAATGTTGGAAGCTGGGGCTTATCCCACCAATTACACTCTAGGAATTGTTTTGAATGCTTCTTCTACCTTGTACTTGATTGAGTTAGGGAAGCAATTGCATGCCTACAGCATCAAATACCAGATTGACTTTGATACCAGTATTGGAAACTCTCTTTGCAGTTTATACTCAAAATGTGGAAACTTGAAATCCGCTTTTAAATCATTTAAGAAAATTAAGGAAAAGAATGTGATCTCTTGGACTTCAGCTATATCTGCTTGTGGTGATAATGGTGATGCTTCAAAGGGTTTGTCATTTTTCACTGAAATGCTTTCGGAGGGAATCGAGCCTAATGAGTACACCCTGACCAGTGCCTTGAGCTTGTGTTGTACAATGCTGTCTTTGGGTGCAGGGATACAGATCCATTCCTTAATCATTAAACTTGGCTATGAGTTGAACCTTCCAGTGAGAAATGCTATCATGTATTTGTACCTCAAATGTGGCATGATAAATGAGGCTAGAAAGTTGCTTAATGGAATGGAAGCTATGAGCTTGATTACATGGAATGCAATGATTGCAGGCCATGCCCAAATTATTGATCTTGCAGAAGATGATATTTCAGCATACCAAAGTGGAACTGAAGCGCTTAACATATTCTTGAAATTGAATCGCTCTGGGGTAAAACCTGATTTATTCACCTTCTCAAGTATCTTAACTGTATGTAGTAGTATGGTGGCTTTAGAACAGGGAGAACAGGTTCATGCTCAGAGCATTAAAAGCGGGTTTCTCTCAGATATTGTAGTAGCAACTGCGCTAGTCAATATGTACAATAAATGTGGAAGCATTGAGAAAGCAAGTAAAGTTTTCATAGAGATGTCTACAAGAACGTTGATATCGTGGACTAGTATGATTGCAGGTTTTGCACAGCATGGCTGGACTCAGCAAGCACTGCAGCTCTTTGAGGATATGAGAATTGCAGGAGTTAGACCAAATCAGGTTACTTTTGTGAGTGTTCTATCAGCTTGTAGCCATGCTGGAATGGTCAATGAAGCACTTGGTTACTTTGAGTCCATGAAAAAGGACTACAGGATTAAACCTGTGATGGACCATTATGCCTGCTTGATTGATATGTTCGTGAGGTTGGGTCGGTTAGATGAAGCCTTTGGTCTTGTCAAGAAAATGGATTTTGAACCGAATGAGTTTATATGGTCAACCTTGGTTGCAGGTTGCAGAACTCATGGGAATTTAGACGGGGGATTTTATGCTGCTCAACAGTTGCTCAAGCTCAAACCAAAAGATCCAGAGACTTATGTCATGTTGTTGAACATGTACATCTCTGCAGAAAAATGGAAGGATGTATCTAGGGTGAGAAAAATGATGAAAGAGGAGAAGCTTGGGAAGCTGGAGGAGTGGAGCTGGATTAGCATTAAAGACAAGGTTCATTCATTCAAACCCAATGATAAATCTCATCCCCAAAGTGAAGATGTTCAAAAATACGTTGAAAGTTTGATTGATCAAGTCAAGAGTCTTGGATACAAGGCAGTAGAAAGTTTGGAATTAACTGATGAAGATGCAGAAACGACTTTATTCTCTTCTACATCTTTCCACAGTGAAAAGTTGGCAATTGCTTTTGGATTTTTGAACACGCCAAATGCTGCCCCAATTCGGGTCATCAAGAATATCAGTATGTGCAGGGATTGCCATAATTTTGTTAAGTTCATATCATTACTGACTTCTAGGGAAATAATCATTCGAGATAGCAAGCGCCTTCACAAGTTTTTGAATGGAAAATGTTCATGTGGGGATTTTGGAGCTCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

765

Amino Acids

85.21

Weight (kDa)

7.51

Isoelectric Point (pI)

34.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 138 - 184 3.2e-10 PPR repeat family
PPR PF01535 141 - 170 5.3e-06 PPR repeat
PPR_2 PF13041 239 - 287 2.6e-09 PPR repeat family
PPR_2 PF13041 454 - 500 6e-10 PPR repeat family
PPR PF01535 455 - 484 2.1e-06 PPR repeat
PPR_3 PF13812 476 - 536 1.1e-07 Pentatricopeptide repeat domain
E_motif PF20431 570 - 631 5.8e-12 E motif
DYW_deaminase PF14432 679 - 760 7.6e-29 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016862)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g33990
malus_domestica MD15G1390700.v1.1
prunus_persica Prupe.1G539500_v2.0.a1
pyrus_communis pycom15g34980
rosa_chinensis RchiOBHm_Chr7g0233371
rosa_laevigata RLG00000001274
rosa_multiflora Rmu_sc0008806.1_g000005
rosa_roxburghii Rroxscaffold_3G00227330
rosa_rugosa Rorug07G0280500
rosa_samantha Rh7BG409100 Rh7CG455500
rosa_wichuraiana Rw0G022470 Rw7G035890 Rw7G035930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1376, 1685
AccI GTMKAC 1 cut(s) 1349
AciI CCGC 2 cut(s) 684, 1251
AclI AACGTT 1 cut(s) 1358
AclWI GGATC 2 cut(s) 886, 1763
AcoI YGGCCR 1 cut(s) 292
AcsI RAATTY 3 cut(s) 139, 262, 1714
AcuI CTGAAG 3 cut(s) 40, 720, 1131
AfaI GTAC 6 cut(s) 566, 830, 862, 962, 1298, 1802
AfeI AGCGCT 1 cut(s) 1116
AfiI CCNNNNNNNGG 2 cut(s) 2136, 2137
AflIII ACRYGT 2 cut(s) 108, 1797
AhlI ACTAGT 1 cut(s) 1373
AjnI CCWGG 1 cut(s) 161
AloI GAACNNNNNNTCC 2 cut(s) 1212, 1244
Alw21I GWGCWC 1 cut(s) 2287
Alw26I GTCTC 2 cut(s) 171, 1769
AlwI GGATC 2 cut(s) 886, 1763
AlwNI CAGNNNCTG 1 cut(s) 23
Aor51HI AGCGCT 1 cut(s) 1116
AoxI GGCC 2 cut(s) 292, 1051
ApeKI GCWGC 4 cut(s) 463, 1423, 1736, 2126
ApoI RAATTY 3 cut(s) 139, 262, 1714
ArsI GACNNNNNNTTYG 2 cut(s) 767, 799
Asp700I GAANNNNTTC 3 cut(s) 1227, 1956, 2263
AspLEI GCGC 3 cut(s) 1117, 1285, 2238
AspS9I GGNCC 1 cut(s) 1576
AsuHPI GGTGA 4 cut(s) 767, 776, 1159, 1849
AvaII GGWCC 1 cut(s) 1576
BalI TGGCCA 1 cut(s) 294
BanII GRGCYC 1 cut(s) 2287
Bbv12I GWGCWC 1 cut(s) 2287
BbvI GCAGC 4 cut(s) 475, 1435, 1723, 2113
BccI CCATC 3 cut(s) 140, 140, 1567
BciT130I CCWGG 1 cut(s) 163
BciVI GTATCC 2 cut(s) 879, 1997
BclI TGATCA 1 cut(s) 1984
BcoDI GTCTC 2 cut(s) 171, 1769
BcuI ACTAGT 1 cut(s) 1373
BfaI CTAG 8 cut(s) 408, 491, 533, 990, 1286, 1374, 1833, 2208
BfmI CTRYAG 4 cut(s) 598, 1421, 1555, 1809
BfoI RGCGCY 2 cut(s) 1118, 2239
BfuAI ACCTGC 2 cut(s) 1376, 1685
BfuI GTATCC 2 cut(s) 879, 1997
BisI GCNGC 4 cut(s) 464, 1424, 1737, 2127
BlsI GCNGC 4 cut(s) 465, 1425, 1738, 2128
Bme1390I CCNGG 1 cut(s) 163
Bme18I GGWCC 1 cut(s) 1576
BmgT120I GGNCC 1 cut(s) 1576
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 163
BmsI GCATC 5 cut(s) 265, 302, 612, 757, 2032
BoxI GACNNNNGTC 1 cut(s) 1781
BpmI CTGGAG 1 cut(s) 1895
BpuEI CTTGAG 3 cut(s) 868, 1159, 1736
BsaBI GATNNNNATC 1 cut(s) 890
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 3 cut(s) 161, 210, 1686
BsaXI ACNNNNNCTCC 2 cut(s) 1212, 1242
Bsc4I CCNNNNNNNGG 2 cut(s) 2136, 2137
Bse1I ACTGG 3 cut(s) 630, 840, 935
Bse3DI GCAATG 1 cut(s) 1047
Bse8I GATNNNNATC 1 cut(s) 890
BseBI CCWGG 1 cut(s) 163
BseDI CCNNGG 3 cut(s) 161, 210, 1686
BseGI GGATG 4 cut(s) 151, 317, 1831, 1939
BseJI GATNNNNATC 1 cut(s) 890
BseLI CCNNNNNNNGG 2 cut(s) 2136, 2137
BseMI GCAATG 1 cut(s) 1047
BseMII CTCAG 3 cut(s) 1250, 1275, 1424
BseNI ACTGG 3 cut(s) 630, 840, 935
BseRI GAGGAG 2 cut(s) 1871, 1892
BseXI GCAGC 4 cut(s) 475, 1435, 1723, 2113
BseYI CCCAGC 1 cut(s) 506
BsgI GTGCAG 2 cut(s) 900, 2182
BshFI GGCC 2 cut(s) 294, 1053
BsiHKAI GWGCWC 1 cut(s) 2287
BslFI GGGAC 1 cut(s) 218
BslI CCNNNNNNNGG 2 cut(s) 2136, 2137
BsmAI GTCTC 2 cut(s) 171, 1769
BsmFI GGGAC 1 cut(s) 218
BsmI GAATGC 2 cut(s) 553, 1042
BsnI GGCC 2 cut(s) 294, 1053
Bso31I GGTCTC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 2287
Bsp1407I TGTACA 3 cut(s) 860, 1296, 1800
Bsp143I GATC 5 cut(s) 723, 891, 1069, 1768, 1984
BspACI CCGC 2 cut(s) 684, 1251
BspANI GGCC 2 cut(s) 294, 1053
BspCNI CTCAG 3 cut(s) 1249, 1274, 1423
BspLI GGNNCC 1 cut(s) 208
BspMAI CTGCAG 2 cut(s) 1425, 1813
BspMI ACCTGC 2 cut(s) 1376, 1685
BspPI GGATC 2 cut(s) 886, 1763
BspQI GCTCTTC 1 cut(s) 2292
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 1047
BsrGI TGTACA 3 cut(s) 860, 1296, 1800
BsrI ACTGG 3 cut(s) 630, 840, 935
BssECI CCNNGG 3 cut(s) 161, 210, 1686
BssMI GATC 5 cut(s) 723, 891, 1069, 1768, 1984
BssT1I CCWWGG 2 cut(s) 210, 1686
Bst2UI CCWGG 1 cut(s) 163
Bst4CI ACNGT 3 cut(s) 1189, 1746, 2081
Bst6I CTCTTC 2 cut(s) 2068, 2292
BstAPI GCANNNNNTGC 5 cut(s) 1046, 1055, 1391, 1420, 2169
BstAUI TGTACA 3 cut(s) 860, 1296, 1800
BstC8I GCNNGC 5 cut(s) 594, 1051, 1416, 1588, 2234
BstDEI CTNAG 3 cut(s) 1236, 1261, 1410
BstF5I GGATG 4 cut(s) 151, 317, 1831, 1939
BstH2I RGCGCY 2 cut(s) 1118, 2239
BstHHI GCGC 3 cut(s) 1117, 1285, 2238
BstKTI GATC 5 cut(s) 726, 894, 1072, 1771, 1987
BstMAI GTCTC 2 cut(s) 171, 1769
BstMBI GATC 5 cut(s) 723, 891, 1069, 1768, 1984
BstNI CCWGG 1 cut(s) 163
BstNSI RCATGY 2 cut(s) 596, 1801
BstPAI GACNNNNGTC 1 cut(s) 1781
BstSCI CCNGG 1 cut(s) 161
BstSFI CTRYAG 4 cut(s) 598, 1421, 1555, 1809
BstV1I GCAGC 4 cut(s) 475, 1435, 1723, 2113
BstX2I RGATCY 2 cut(s) 891, 1768
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 2 cut(s) 891, 1768
BsuI GTATCC 2 cut(s) 879, 1997
BsuRI GGCC 2 cut(s) 294, 1053
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 4 cut(s) 151, 317, 1831, 1939
BtsI GCAGTG 1 cut(s) 1418
BtsIMutI CAGTG 5 cut(s) 792, 847, 942, 1418, 2086
BveI ACCTGC 2 cut(s) 1376, 1685
Cac8I GCNNGC 5 cut(s) 594, 1051, 1416, 1588, 2234
CaiI CAGNNNCTG 1 cut(s) 23
CfoI GCGC 3 cut(s) 1117, 1285, 2238
Cfr13I GGNCC 1 cut(s) 1576
Csp6I GTAC 6 cut(s) 565, 829, 861, 961, 1297, 1801
CspCI CAANNNNNGTGG 2 cut(s) 1288, 1323
CviQI GTAC 6 cut(s) 565, 829, 861, 961, 1297, 1801
DdeI CTNAG 3 cut(s) 1236, 1261, 1410
DpnI GATC 5 cut(s) 725, 893, 1071, 1770, 1986
DpnII GATC 5 cut(s) 723, 891, 1069, 1768, 1984
DraI TTTAAA 1 cut(s) 691
EaeI YGGCCR 1 cut(s) 292
Eam1104I CTCTTC 2 cut(s) 2068, 2292
EarI CTCTTC 2 cut(s) 2068, 2292
Ecl136II GAGCTC 1 cut(s) 2285
Eco130I CCWWGG 2 cut(s) 210, 1686
Eco24I GRGCYC 1 cut(s) 2287
Eco31I GGTCTC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 1365
Eco47I GGWCC 1 cut(s) 1576
Eco47III AGCGCT 1 cut(s) 1116
Eco53kI GAGCTC 1 cut(s) 2285
Eco57I CTGAAG 3 cut(s) 40, 720, 1131
EcoICRI GAGCTC 1 cut(s) 2285
EcoRI GAATTC 1 cut(s) 262
EcoRII CCWGG 1 cut(s) 161
EcoRV GATATC 1 cut(s) 1365
EcoT14I CCWWGG 2 cut(s) 210, 1686
EcoT38I GRGCYC 1 cut(s) 2287
ErhI CCWWGG 2 cut(s) 210, 1686
FaqI GGGAC 1 cut(s) 218
FauI CCCGC 1 cut(s) 1244
FbaI TGATCA 1 cut(s) 1984
FblI GTMKAC 1 cut(s) 1349
Fnu4HI GCNGC 4 cut(s) 464, 1424, 1737, 2127
FokI GGATG 4 cut(s) 158, 324, 1838, 1926
FriOI GRGCYC 1 cut(s) 2287
Fsp4HI GCNGC 4 cut(s) 464, 1424, 1737, 2127
FspBI CTAG 8 cut(s) 408, 491, 533, 990, 1286, 1374, 1833, 2208
GlaI GCGC 3 cut(s) 1116, 1284, 2237
GluI GCNGC 4 cut(s) 464, 1424, 1737, 2127
GsaI CCCAGC 1 cut(s) 510
GsuI CTGGAG 1 cut(s) 1895
HaeII RGCGCY 2 cut(s) 1118, 2239
HaeIII GGCC 2 cut(s) 294, 1053
HhaI GCGC 3 cut(s) 1117, 1285, 2238
Hin6I GCGC 3 cut(s) 1115, 1283, 2236
HinP1I GCGC 3 cut(s) 1115, 1283, 2236
HincII GTYRAC 1 cut(s) 1683
HindII GTYRAC 1 cut(s) 1683
HindIII AAGCTT 2 cut(s) 41, 1862
HinfI GANTC 7 cut(s) 218, 369, 813, 1138, 1408, 1538, 1996
HphI GGTGA 4 cut(s) 767, 776, 1159, 1849
Hpy166II GTNNAC 6 cut(s) 429, 454, 831, 1350, 1371, 1683
Hpy188III TCNNGA 8 cut(s) 170, 1129, 1606, 1645, 1772, 1993, 2146, 2225
Hpy8I GTNNAC 6 cut(s) 429, 454, 831, 1350, 1371, 1683
HpyAV CCTTC 5 cut(s) 24, 941, 1180, 1816, 2249
HpyCH4III ACNGT 3 cut(s) 1189, 1746, 2081
HpyCH4IV ACGT 3 cut(s) 108, 1358, 1968
HpyF3I CTNAG 3 cut(s) 1236, 1261, 1410
HpySE526I ACGT 3 cut(s) 108, 1358, 1968
HspAI GCGC 3 cut(s) 1115, 1283, 2236
Ksp22I TGATCA 1 cut(s) 1984
Kzo9I GATC 5 cut(s) 723, 891, 1069, 1768, 1984
LguI GCTCTTC 1 cut(s) 2292
LmnI GCTCC 2 cut(s) 1884, 2282
Lsp1109I GCAGC 4 cut(s) 475, 1435, 1723, 2113
LweI GCATC 5 cut(s) 265, 302, 612, 757, 2032
MaeI CTAG 8 cut(s) 408, 491, 533, 990, 1286, 1374, 1833, 2208
MaeII ACGT 3 cut(s) 108, 1358, 1968
MaeIII GTNAC 3 cut(s) 331, 1468, 1529
MalI GATC 5 cut(s) 725, 893, 1071, 1770, 1986
MboI GATC 5 cut(s) 723, 891, 1069, 1768, 1984
MboII GAAGA 8 cut(s) 75, 423, 546, 1091, 1964, 2051, 2055, 2279
MfeI CAATTG 2 cut(s) 587, 2094
MflI RGATCY 2 cut(s) 891, 1768
MhlI GDGCHC 1 cut(s) 2287
MlsI TGGCCA 1 cut(s) 294
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 4 cut(s) 227, 1402, 1547, 2005
MmeI TCCRAC 1 cut(s) 480
Mox20I TGGCCA 1 cut(s) 294
MroXI GAANNNNTTC 3 cut(s) 1227, 1956, 2263
MscI TGGCCA 1 cut(s) 294
MslI CAYNNNNRTG 2 cut(s) 797, 1343
Msp20I TGGCCA 1 cut(s) 294
MspR9I CCNGG 1 cut(s) 163
MunI CAATTG 2 cut(s) 587, 2094
Mva1269I GAATGC 2 cut(s) 553, 1042
MvaI CCWGG 1 cut(s) 163
NdeII GATC 5 cut(s) 723, 891, 1069, 1768, 1984
NlaIV GGNNCC 1 cut(s) 208
NmuCI GTSAC 1 cut(s) 331
NspI RCATGY 2 cut(s) 596, 1801
PaeI GCATGC 1 cut(s) 596
PciI ACATGT 1 cut(s) 1797
PciSI GCTCTTC 1 cut(s) 2292
PcsI WCGNNNNNNNCGW 1 cut(s) 1364
PctI GAATGC 2 cut(s) 553, 1042
PdmI GAANNNNTTC 3 cut(s) 1227, 1956, 2263
PfeI GAWTC 3 cut(s) 369, 813, 1138
PflFI GACNNNGTC 1 cut(s) 230
PkrI GCNGC 4 cut(s) 465, 1425, 1738, 2128
PleI GAGTC 4 cut(s) 226, 1402, 1546, 2004
PpsI GAGTC 4 cut(s) 226, 1402, 1546, 2004
PscI ACATGT 1 cut(s) 1797
PshAI GACNNNNGTC 1 cut(s) 1781
Psp124BI GAGCTC 1 cut(s) 2287
Psp1406I AACGTT 1 cut(s) 1358
Psp6I CCWGG 1 cut(s) 161
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 1 cut(s) 161
PspN4I GGNNCC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 1576
PstI CTGCAG 2 cut(s) 1425, 1813
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 2 cut(s) 891, 1768
PsyI GACNNNGTC 1 cut(s) 230
RsaI GTAC 6 cut(s) 566, 830, 862, 962, 1298, 1802
RsaNI GTAC 6 cut(s) 565, 829, 861, 961, 1297, 1801
RseI CAYNNNNRTG 2 cut(s) 797, 1343
SacI GAGCTC 1 cut(s) 2287
SapI GCTCTTC 1 cut(s) 2292
SatI GCNGC 4 cut(s) 464, 1424, 1737, 2127
Sau3AI GATC 5 cut(s) 723, 891, 1069, 1768, 1984
Sau96I GGNCC 1 cut(s) 1576
SchI GAGTC 4 cut(s) 227, 1402, 1547, 2005
ScrFI CCNGG 1 cut(s) 163
SduI GDGCHC 1 cut(s) 2287
SfaNI GCATC 5 cut(s) 265, 302, 612, 757, 2032
SfcI CTRYAG 4 cut(s) 598, 1421, 1555, 1809
SinI GGWCC 1 cut(s) 1576
SmiMI CAYNNNNRTG 2 cut(s) 797, 1343
SmlI CTYRAG 3 cut(s) 847, 1174, 1751
SmoI CTYRAG 3 cut(s) 847, 1174, 1751
SpeI ACTAGT 1 cut(s) 1373
SphI GCATGC 1 cut(s) 596
SsiI CCGC 2 cut(s) 684, 1251
SspMI CTAG 8 cut(s) 408, 491, 533, 990, 1286, 1374, 1833, 2208
SstI GAGCTC 1 cut(s) 2287
StyD4I CCNGG 1 cut(s) 161
StyI CCWWGG 2 cut(s) 210, 1686
TaaI ACNGT 3 cut(s) 1189, 1746, 2081
TaiI ACGT 3 cut(s) 111, 1361, 1971
TaqI TCGA 2 cut(s) 816, 2224
TatI WGTACW 5 cut(s) 564, 828, 860, 1296, 1800
TfiI GAWTC 3 cut(s) 369, 813, 1138
TscAI CASTG 5 cut(s) 799, 847, 942, 1425, 2086
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 4 cut(s) 463, 1423, 1736, 2126
Tsp45I GTSAC 1 cut(s) 331
TspRI CASTG 5 cut(s) 799, 847, 942, 1425, 2086
Tth111I GACNNNGTC 1 cut(s) 230
VpaK11BI GGWCC 1 cut(s) 1576
XapI RAATTY 3 cut(s) 139, 262, 1714
XceI RCATGY 2 cut(s) 596, 1801
XmiI GTMKAC 1 cut(s) 1349
XmnI GAANNNNTTC 3 cut(s) 1227, 1956, 2263
XspI CTAG 8 cut(s) 408, 491, 533, 990, 1286, 1374, 1833, 2208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.