Rroxscaffold_3G00227330

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016862
Physical Location & Seq
Forward (+)
11442121 .. 11444358
2238 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227330.1

Sequence Viewer

Length: 2238 bp
ATGAAACTGATTCAGAATCTGTTTTTGTTATCTCAGAGTGGAATTGCAAACGTGTCTTATCAGAAAAGTCAGACCATCGCAAATTCGGATGGAAGTTCAGAACCCAGGTCTCTGGACTTCCGAGAAGCTCTTGTGATGATTAGAGAGGGTTCTAAGGTTGAGTCCTCTTACTATGTCCCTCTCTTGCAAGAATGTATAGACAGGAATTCTGCTTCCGATGCACAAGTTGTGCATGGCCACATCATTAAGACAGGAAGCCACCGAGATTTTTTTGTCACAACTTTCCTTGTCAATGTTTATGCAAAGTGTAGAATCATGGAAACTGCTCGTAAAGTTTTTGACAAATTGCCTGGAAGAAATGTTGTTTCGTGGACAGCTTTGATGTCGGGTTATGTTCACAATTCGCGGCCAGAACTTGCCATTCGGGTTTTCCTTGAAATGTTGGAGGCTGGGGCTTATCCTACCAATTACACTCTAGGAATTGTTTTGAATGCTTCTTCTACCTTGTATTCGATTGAGTTAGGGAAGCAATTGCATGCCTACAGCATCAAATACCAGATTGACTTTGATACGAGTATTGGAAACTCTCTTTGCAGTTTATACTCCAAATGTGGAAACTTGGAATCTGCTTTTAAAGCATTTAAGAAAATTAAGGAAAAGAATGTGATCTCTTGGACTTCGGCTATATCTGCTTGTGGTGATAATGGTGATGCTTCAAAGGGTTTGTCATTTTTCACTGAAATGCTTTCGGAGGGAATCAAGCCTAATGAGTACACCCTAACCAGTGCCTTGAGCTTGTGTTGTACAATGCTGTCTTTGGGTGCAGGGATACAGATCCATTCCTTAATCATTAAACTTGGCTATGAGTTGAACCTTCCAGTGAGAAATGCTATCATGTATTTGTACCTCAAATGTGGCATGATAAATGAGGCTAGAAAGTTGCTTAATGGAATGGAAGCTATGAGCTTGATTACATGGAATGCAATGATTGCAGGCCATGCCCAAATTATTGATCTTGCAGAAGATGATCTTTCAGCATACCAAAGTGGAACTGAAGCGCTTAACATTTTCTTGAAATTGAATCGCTCTGGGGTAAAACCTGATTTATTCACCTTCTCAAGTATCTTAACTGTATGTAGTAGTATGGTGGCTTTAGAACAGGGAGAACAGGTTCATGCTCAGAGCATTAAAAGCGGGTTTCTCTCAGATATTGTAGTAGCAACTACACTAGTCAATATGTACAATAAATGTGGAAGCATTGAGAAAGCAAGTAAAGTTTTCATAGAGATGTCTACAAGAACGTTGATATCGTGGACTAGTATGATTGCAGGTTTTGCACAGCATGGCCGGACTCAGCAAGCACTGCAGCTCTTTGAGGATATGAGAATTGCAGGAGTTAGACCAAATCAGGTTACTTTTGTGAGTGTTCTATCAGCTTGTAGCCATGCTGGAATGGTCAATGAAGCACTTGGTTACTTTGAGTCCATGAAAAAGGACTACAGGATTAAACCTGTGATGGACCATTATGCCTGCTTGATTGATATGTTCGTGAGGTTGGGTCGGTTAGATGAAGCCTTTGGTCTTGTCAAGAAAATGGATTTTGAACCGAATGAGTTTATATGGTCAACCTTGGTTGCAGGTTGTAGAACTCATGGGAATTTAGACAGGGGATTTTATGCTGCTCAACAGTTGCTCAAGCTCAAACCAAAAGATCCAGAGACTTATGTCATGTTGTTGAACATGTACATCTCTGCAGAAAAATGGAAGGATGTATCTAGGGTGAGAAAAATGATGAAAGAGGAGAAGCTTGGGAAGCTGGAGGAGTGGAGCTGGATTAGCATTAAAGACAAGGTTCATTCATTCAAACCCAATGATAAATCTCATCCCCAAAGTGAAGATGTTCAAAAATACGTTGAAAGTTTGATTGATCAAGTCAAGAGTCTTGGATACAAGGCAGTAGAAAGTTTGGAATTAACTGATGAAGATGCAGAAACGACTTTATTCTCTTCTACATCTTTCCACAGTGAAAAGTTGGCAATTGCTTTTGGATTTTTGAACACGCCAAATGCTGCGCCAATTCGGGTCATCAAGAATATCAGTATGTGCAGGGATTGCCATAATTTTGTTAAGTTCATATCATTACTGACTTCTAGGGAAATAATCATTCGAGATAGCAAGCGCCTTCACAAGTTTGTGAATGGAAAATGTTCATGTGGGGATTTTGGAGCTCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

745

Amino Acids

83.32

Weight (kDa)

8.28

Isoelectric Point (pI)

31.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 119 - 165 3.8e-10 PPR repeat family
PPR PF01535 122 - 151 4e-06 PPR repeat
PPR_2 PF13041 220 - 268 2.1e-09 PPR repeat family
PPR_2 PF13041 435 - 481 2.3e-11 PPR repeat family
PPR PF01535 436 - 465 1.1e-06 PPR repeat
PPR_long PF17177 451 - 552 6.4e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 457 - 517 1.1e-07 Pentatricopeptide repeat domain
E_motif PF20431 551 - 612 7.8e-13 E motif
DYW_deaminase PF14432 660 - 741 6.1e-29 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016862)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g33990
malus_domestica MD15G1390700.v1.1
prunus_persica Prupe.1G539500_v2.0.a1
pyrus_communis pycom15g34980
rosa_chinensis RchiOBHm_Chr7g0233371
rosa_laevigata RLG00000001274
rosa_multiflora Rmu_sc0008806.1_g000005
rosa_roxburghii Rroxscaffold_3G00227330
rosa_rugosa Rorug07G0280500
rosa_samantha Rh7BG409100 Rh7CG455500
rosa_wichuraiana Rw0G022470 Rw7G035890 Rw7G035930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1319, 1628
AccI GTMKAC 1 cut(s) 1292
AccII CGCG 1 cut(s) 406
AciI CCGC 2 cut(s) 406, 1194
AclI AACGTT 1 cut(s) 1301
AclWI GGATC 2 cut(s) 829, 1706
AcoI YGGCCR 3 cut(s) 235, 407, 1345
AcsI RAATTY 3 cut(s) 82, 205, 1657
AcuI CTGAAG 1 cut(s) 1074
AfaI GTAC 5 cut(s) 773, 805, 905, 1241, 1745
AfeI AGCGCT 1 cut(s) 1059
AflIII ACRYGT 2 cut(s) 51, 1740
AhlI ACTAGT 2 cut(s) 1228, 1316
AjnI CCWGG 2 cut(s) 104, 349
AloI GAACNNNNNNTCC 2 cut(s) 1155, 1187
Alw21I GWGCWC 1 cut(s) 2230
Alw26I GTCTC 2 cut(s) 114, 1712
AlwI GGATC 2 cut(s) 829, 1706
AlwNI CAGNNNCTG 1 cut(s) 19
Aor51HI AGCGCT 1 cut(s) 1059
AoxI GGCC 4 cut(s) 235, 407, 994, 1345
ApeKI GCWGC 3 cut(s) 1366, 1679, 2069
ApoI RAATTY 3 cut(s) 82, 205, 1657
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
Asp700I GAANNNNTTC 3 cut(s) 1170, 1899, 2206
AspLEI GCGC 3 cut(s) 1060, 2074, 2181
AspS9I GGNCC 1 cut(s) 1519
AsuHPI GGTGA 4 cut(s) 710, 719, 1102, 1792
AvaII GGWCC 1 cut(s) 1519
BalI TGGCCA 1 cut(s) 237
BanII GRGCYC 1 cut(s) 2230
Bbv12I GWGCWC 1 cut(s) 2230
BbvI GCAGC 3 cut(s) 1378, 1666, 2056
BccI CCATC 3 cut(s) 83, 83, 1510
BciT130I CCWGG 2 cut(s) 106, 351
BciVI GTATCC 2 cut(s) 822, 1940
BclI TGATCA 1 cut(s) 1927
BcoDI GTCTC 2 cut(s) 114, 1712
BcuI ACTAGT 2 cut(s) 1228, 1316
BfaI CTAG 6 cut(s) 476, 933, 1229, 1317, 1776, 2151
BfmI CTRYAG 4 cut(s) 541, 1364, 1498, 1752
BfoI RGCGCY 2 cut(s) 1061, 2182
BfuAI ACCTGC 2 cut(s) 1319, 1628
BfuI GTATCC 2 cut(s) 822, 1940
BisI GCNGC 4 cut(s) 407, 1367, 1680, 2070
BlsI GCNGC 4 cut(s) 408, 1368, 1681, 2071
Bme1390I CCNGG 2 cut(s) 106, 351
Bme18I GGWCC 1 cut(s) 1519
BmgT120I GGNCC 1 cut(s) 1519
BmrFI CCNGG 2 cut(s) 106, 351
BmsI GCATC 4 cut(s) 208, 555, 700, 1975
BoxI GACNNNNGTC 1 cut(s) 1724
BpmI CTGGAG 1 cut(s) 1838
BpuEI CTTGAG 3 cut(s) 811, 1102, 1679
BsaBI GATNNNNATC 1 cut(s) 833
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 104, 1629
BsaXI ACNNNNNCTCC 2 cut(s) 1155, 1185
Bse1I ACTGG 2 cut(s) 783, 878
Bse3DI GCAATG 1 cut(s) 990
Bse8I GATNNNNATC 1 cut(s) 833
BseBI CCWGG 2 cut(s) 106, 351
BseDI CCNNGG 2 cut(s) 104, 1629
BseGI GGATG 3 cut(s) 94, 1774, 1882
BseJI GATNNNNATC 1 cut(s) 833
BseMI GCAATG 1 cut(s) 990
BseMII CTCAG 4 cut(s) 47, 1193, 1218, 1367
BseNI ACTGG 2 cut(s) 783, 878
BseRI GAGGAG 2 cut(s) 1814, 1835
BseXI GCAGC 3 cut(s) 1378, 1666, 2056
BseYI CCCAGC 1 cut(s) 449
BsgI GTGCAG 2 cut(s) 843, 2125
Bsh1236I CGCG 1 cut(s) 406
BshFI GGCC 4 cut(s) 237, 409, 996, 1347
BsiHKAI GWGCWC 1 cut(s) 2230
BsiSI CCGG 1 cut(s) 1348
BslFI GGGAC 1 cut(s) 161
BsmAI GTCTC 2 cut(s) 114, 1712
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 2 cut(s) 496, 985
BsnI GGCC 4 cut(s) 237, 409, 996, 1347
Bso31I GGTCTC 1 cut(s) 114
Bsp1286I GDGCHC 1 cut(s) 2230
Bsp1407I TGTACA 3 cut(s) 803, 1239, 1743
Bsp143I GATC 6 cut(s) 666, 834, 1012, 1027, 1711, 1927
BspACI CCGC 2 cut(s) 406, 1194
BspANI GGCC 4 cut(s) 237, 409, 996, 1347
BspCNI CTCAG 4 cut(s) 46, 1192, 1217, 1366
BspFNI CGCG 1 cut(s) 406
BspMAI CTGCAG 2 cut(s) 1368, 1756
BspMI ACCTGC 2 cut(s) 1319, 1628
BspPI GGATC 2 cut(s) 829, 1706
BspQI GCTCTTC 1 cut(s) 2235
BspTNI GGTCTC 1 cut(s) 114
BsrDI GCAATG 1 cut(s) 990
BsrGI TGTACA 3 cut(s) 803, 1239, 1743
BsrI ACTGG 2 cut(s) 783, 878
BssECI CCNNGG 2 cut(s) 104, 1629
BssMI GATC 6 cut(s) 666, 834, 1012, 1027, 1711, 1927
BssT1I CCWWGG 1 cut(s) 1629
Bst2UI CCWGG 2 cut(s) 106, 351
Bst4CI ACNGT 3 cut(s) 1132, 1689, 2024
Bst6I CTCTTC 2 cut(s) 2011, 2235
BstAPI GCANNNNNTGC 5 cut(s) 989, 998, 1334, 1363, 2112
BstAUI TGTACA 3 cut(s) 803, 1239, 1743
BstC8I GCNNGC 5 cut(s) 537, 994, 1359, 1531, 2177
BstDEI CTNAG 5 cut(s) 33, 153, 1179, 1204, 1353
BstF5I GGATG 3 cut(s) 94, 1774, 1882
BstFNI CGCG 1 cut(s) 406
BstH2I RGCGCY 2 cut(s) 1061, 2182
BstHHI GCGC 3 cut(s) 1060, 2074, 2181
BstKTI GATC 6 cut(s) 669, 837, 1015, 1030, 1714, 1930
BstMAI GTCTC 2 cut(s) 114, 1712
BstMBI GATC 6 cut(s) 666, 834, 1012, 1027, 1711, 1927
BstNI CCWGG 2 cut(s) 106, 351
BstNSI RCATGY 2 cut(s) 539, 1744
BstPAI GACNNNNGTC 1 cut(s) 1724
BstSCI CCNGG 2 cut(s) 104, 349
BstSFI CTRYAG 4 cut(s) 541, 1364, 1498, 1752
BstUI CGCG 1 cut(s) 406
BstV1I GCAGC 3 cut(s) 1378, 1666, 2056
BstX2I RGATCY 2 cut(s) 834, 1711
BstXI CCANNNNNNTGG 1 cut(s) 112
BstYI RGATCY 2 cut(s) 834, 1711
BsuI GTATCC 2 cut(s) 822, 1940
BsuRI GGCC 4 cut(s) 237, 409, 996, 1347
BtgZI GCGATG 1 cut(s) 61
BtsCI GGATG 3 cut(s) 94, 1774, 1882
BtsI GCAGTG 1 cut(s) 1361
BtsIMutI CAGTG 5 cut(s) 735, 790, 885, 1361, 2029
BveI ACCTGC 2 cut(s) 1319, 1628
Cac8I GCNNGC 5 cut(s) 537, 994, 1359, 1531, 2177
CaiI CAGNNNCTG 1 cut(s) 19
CfoI GCGC 3 cut(s) 1060, 2074, 2181
Cfr13I GGNCC 1 cut(s) 1519
Csp6I GTAC 5 cut(s) 772, 804, 904, 1240, 1744
CspCI CAANNNNNGTGG 2 cut(s) 1231, 1266
CviQI GTAC 5 cut(s) 772, 804, 904, 1240, 1744
DdeI CTNAG 5 cut(s) 33, 153, 1179, 1204, 1353
DpnI GATC 6 cut(s) 668, 836, 1014, 1029, 1713, 1929
DpnII GATC 6 cut(s) 666, 834, 1012, 1027, 1711, 1927
DraI TTTAAA 1 cut(s) 634
EaeI YGGCCR 3 cut(s) 235, 407, 1345
Eam1104I CTCTTC 2 cut(s) 2011, 2235
EarI CTCTTC 2 cut(s) 2011, 2235
Ecl136II GAGCTC 1 cut(s) 2228
Eco130I CCWWGG 1 cut(s) 1629
Eco24I GRGCYC 1 cut(s) 2230
Eco31I GGTCTC 1 cut(s) 114
Eco32I GATATC 1 cut(s) 1308
Eco47I GGWCC 1 cut(s) 1519
Eco47III AGCGCT 1 cut(s) 1059
Eco53kI GAGCTC 1 cut(s) 2228
Eco57I CTGAAG 1 cut(s) 1074
EcoICRI GAGCTC 1 cut(s) 2228
EcoRI GAATTC 1 cut(s) 205
EcoRII CCWGG 2 cut(s) 104, 349
EcoRV GATATC 1 cut(s) 1308
EcoT14I CCWWGG 1 cut(s) 1629
EcoT38I GRGCYC 1 cut(s) 2230
ErhI CCWWGG 1 cut(s) 1629
FalI AAGNNNNNCTT 2 cut(s) 1014, 1046
FaqI GGGAC 1 cut(s) 161
FauI CCCGC 1 cut(s) 1187
FbaI TGATCA 1 cut(s) 1927
FblI GTMKAC 1 cut(s) 1292
Fnu4HI GCNGC 4 cut(s) 407, 1367, 1680, 2070
FokI GGATG 3 cut(s) 101, 1781, 1869
FriOI GRGCYC 1 cut(s) 2230
Fsp4HI GCNGC 4 cut(s) 407, 1367, 1680, 2070
FspBI CTAG 6 cut(s) 476, 933, 1229, 1317, 1776, 2151
GlaI GCGC 3 cut(s) 1059, 2073, 2180
GluI GCNGC 4 cut(s) 407, 1367, 1680, 2070
GsaI CCCAGC 1 cut(s) 453
GsuI CTGGAG 1 cut(s) 1838
HaeII RGCGCY 2 cut(s) 1061, 2182
HaeIII GGCC 4 cut(s) 237, 409, 996, 1347
HapII CCGG 1 cut(s) 1348
HhaI GCGC 3 cut(s) 1060, 2074, 2181
Hin6I GCGC 3 cut(s) 1058, 2072, 2179
HinP1I GCGC 3 cut(s) 1058, 2072, 2179
HincII GTYRAC 1 cut(s) 1626
HindII GTYRAC 1 cut(s) 1626
HindIII AAGCTT 1 cut(s) 1805
HpaII CCGG 1 cut(s) 1348
HphI GGTGA 4 cut(s) 710, 719, 1102, 1792
Hpy166II GTNNAC 6 cut(s) 372, 397, 774, 1293, 1314, 1626
Hpy188III TCNNGA 8 cut(s) 113, 1072, 1549, 1588, 1715, 1936, 2089, 2168
Hpy8I GTNNAC 6 cut(s) 372, 397, 774, 1293, 1314, 1626
HpyAV CCTTC 4 cut(s) 884, 1123, 1759, 2192
HpyCH4III ACNGT 3 cut(s) 1132, 1689, 2024
HpyCH4IV ACGT 3 cut(s) 51, 1301, 1911
HpyF3I CTNAG 5 cut(s) 33, 153, 1179, 1204, 1353
HpySE526I ACGT 3 cut(s) 51, 1301, 1911
HspAI GCGC 3 cut(s) 1058, 2072, 2179
Ksp22I TGATCA 1 cut(s) 1927
Kzo9I GATC 6 cut(s) 666, 834, 1012, 1027, 1711, 1927
LguI GCTCTTC 1 cut(s) 2235
LmnI GCTCC 2 cut(s) 1827, 2225
Lsp1109I GCAGC 3 cut(s) 1378, 1666, 2056
LweI GCATC 4 cut(s) 208, 555, 700, 1975
MaeI CTAG 6 cut(s) 476, 933, 1229, 1317, 1776, 2151
MaeII ACGT 3 cut(s) 51, 1301, 1911
MaeIII GTNAC 3 cut(s) 274, 1411, 1472
MalI GATC 6 cut(s) 668, 836, 1014, 1029, 1713, 1929
MboI GATC 6 cut(s) 666, 834, 1012, 1027, 1711, 1927
MboII GAAGA 7 cut(s) 366, 489, 1034, 1907, 1994, 1998, 2222
MfeI CAATTG 2 cut(s) 530, 2037
MflI RGATCY 2 cut(s) 834, 1711
MhlI GDGCHC 1 cut(s) 2230
MlsI TGGCCA 1 cut(s) 237
MluNI TGGCCA 1 cut(s) 237
MlyI GAGTC 4 cut(s) 170, 1345, 1490, 1948
MmeI TCCRAC 1 cut(s) 423
Mox20I TGGCCA 1 cut(s) 237
MroXI GAANNNNTTC 3 cut(s) 1170, 1899, 2206
MscI TGGCCA 1 cut(s) 237
MslI CAYNNNNRTG 2 cut(s) 740, 1286
Msp20I TGGCCA 1 cut(s) 237
MspI CCGG 1 cut(s) 1348
MspR9I CCNGG 2 cut(s) 106, 351
MunI CAATTG 2 cut(s) 530, 2037
Mva1269I GAATGC 2 cut(s) 496, 985
MvaI CCWGG 2 cut(s) 106, 351
MvnI CGCG 1 cut(s) 406
NdeII GATC 6 cut(s) 666, 834, 1012, 1027, 1711, 1927
NmuCI GTSAC 1 cut(s) 274
NspI RCATGY 2 cut(s) 539, 1744
PaeI GCATGC 1 cut(s) 539
PciI ACATGT 1 cut(s) 1740
PciSI GCTCTTC 1 cut(s) 2235
PcsI WCGNNNNNNNCGW 1 cut(s) 1307
PctI GAATGC 2 cut(s) 496, 985
PdmI GAANNNNTTC 3 cut(s) 1170, 1899, 2206
PfeI GAWTC 6 cut(s) 10, 16, 312, 623, 756, 1081
PkrI GCNGC 4 cut(s) 408, 1368, 1681, 2071
PleI GAGTC 4 cut(s) 169, 1345, 1489, 1947
PpsI GAGTC 4 cut(s) 169, 1345, 1489, 1947
PscI ACATGT 1 cut(s) 1740
PshAI GACNNNNGTC 1 cut(s) 1724
Psp124BI GAGCTC 1 cut(s) 2230
Psp1406I AACGTT 1 cut(s) 1301
Psp6I CCWGG 2 cut(s) 104, 349
PspFI CCCAGC 1 cut(s) 449
PspGI CCWGG 2 cut(s) 104, 349
PspPI GGNCC 1 cut(s) 1519
PstI CTGCAG 2 cut(s) 1368, 1756
PstNI CAGNNNCTG 1 cut(s) 19
PsuI RGATCY 2 cut(s) 834, 1711
RsaI GTAC 5 cut(s) 773, 805, 905, 1241, 1745
RsaNI GTAC 5 cut(s) 772, 804, 904, 1240, 1744
RseI CAYNNNNRTG 2 cut(s) 740, 1286
SacI GAGCTC 1 cut(s) 2230
SapI GCTCTTC 1 cut(s) 2235
SatI GCNGC 4 cut(s) 407, 1367, 1680, 2070
Sau3AI GATC 6 cut(s) 666, 834, 1012, 1027, 1711, 1927
Sau96I GGNCC 1 cut(s) 1519
SchI GAGTC 4 cut(s) 170, 1345, 1490, 1948
ScrFI CCNGG 2 cut(s) 106, 351
SduI GDGCHC 1 cut(s) 2230
SfaNI GCATC 4 cut(s) 208, 555, 700, 1975
SfcI CTRYAG 4 cut(s) 541, 1364, 1498, 1752
SinI GGWCC 1 cut(s) 1519
SmiMI CAYNNNNRTG 2 cut(s) 740, 1286
SmlI CTYRAG 3 cut(s) 790, 1117, 1694
SmoI CTYRAG 3 cut(s) 790, 1117, 1694
SpeI ACTAGT 2 cut(s) 1228, 1316
SphI GCATGC 1 cut(s) 539
SsiI CCGC 2 cut(s) 406, 1194
SspMI CTAG 6 cut(s) 476, 933, 1229, 1317, 1776, 2151
SstI GAGCTC 1 cut(s) 2230
StyD4I CCNGG 2 cut(s) 104, 349
StyI CCWWGG 1 cut(s) 1629
TaaI ACNGT 3 cut(s) 1132, 1689, 2024
TaiI ACGT 3 cut(s) 54, 1304, 1914
TaqI TCGA 2 cut(s) 512, 2167
TatI WGTACW 4 cut(s) 771, 803, 1239, 1743
TauI GCSGC 1 cut(s) 409
TfiI GAWTC 6 cut(s) 10, 16, 312, 623, 756, 1081
TscAI CASTG 5 cut(s) 742, 790, 885, 1368, 2029
TseFI GTSAC 1 cut(s) 274
TseI GCWGC 3 cut(s) 1366, 1679, 2069
Tsp45I GTSAC 1 cut(s) 274
TspRI CASTG 5 cut(s) 742, 790, 885, 1368, 2029
VpaK11BI GGWCC 1 cut(s) 1519
XapI RAATTY 3 cut(s) 82, 205, 1657
XceI RCATGY 2 cut(s) 539, 1744
XmiI GTMKAC 1 cut(s) 1292
XmnI GAANNNNTTC 3 cut(s) 1170, 1899, 2206
XspI CTAG 6 cut(s) 476, 933, 1229, 1317, 1776, 2151
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.