Rw0G022470

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig01044
OG0016862
Physical Location & Seq
Reverse (-)
15283 .. 17855
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G022470.1

Sequence Viewer

Length: 2202 bp
ATGGCTTCTCTACCTTCAGTTGCTGTTAGTGGCAATATCAAGCTTGACCAAGAATTCAGAAAACACCCCACAACTTCTATTTCTTCCGAAAAGAGTGGAATTGCAAACGTGTCTTATCCGAAAAGTCAGACCATCGCAAATTCGGATGGAAGTTCAGAACCCAGGTCTCTGGACTTCCGAGAAGCTCTTGTGATGATTCGAGAGGGTTCTAAGGTTGAGTCCTCTTACTATGTTCCTCTCTTGCAAGAATGTATAGACCGGAATTCGGCCTCCGATGCGCAAGTTGTGCATGGCCACATCATTAAGACAGGAAGCCACCAAGATTTGTTTGTCACAACTTTCCTTGTCAATGTTTATGCAAAGTGTAGAATCATGGAAAATGCTCGTAAAGTTTTTGACAAATTGTCTAAAAGAAATGTTGTTTCGTGGACAGCTTTGATGTCGGGTTATGTTCACAATTCGCGGCCAGAACTTGCCATTCGGGTTTTCCTGGAAATGTTGGAAGCTGGGGCTTATCCTACCAATTACACTCTAGGAATTGTTTTGAATGCTTCTTCTACCTTGTACTCGATTGAGTTAGGGAAGCAATTGCATGCCTACAGCATCAAATACCAGATTGACTTTGATACCAGTATTGGAAACTCTCTTTGCAGTTTATACTCCAAATGTGGAAACTTGGAATCTGCTTTTAAAGCATTTAAGAAAATTAAGGAAAAGAATGGTTTGGCATTTTTCACTGAAATGCTTTCGGAGGGAATAGAGCCTAATGAGTACACCCTGACCAGTGCCTTGAGCTTGTGTTGTACAATGCTGTCTTTGGGTGCAGGGATACAGATCCATTCCTTAATCATTAAACTTGGCTATGAGTTGAACCTTCCAGTGAGAAATGCAATCATGTATTTGTACCTCAAATGTGGCATGGTAAATGAGGCTAGAAAGTTGCTTAATGGAATGGAAGCTATGAGCTTGATTACATGGAATGCAATGATTGCAGGCCATGCCCAAATTATTGATCTTGCAGAAGATGATCTTTCAGCATACCAAAGTGGAACTGAAGCACTTAACATTTTCTTGAAATTGAATCGCTCTGGGATAAAACCTGATTTATTCACCTTCTCAAAACAGGGAGAACAGGTTCATGCTCAGAGCATTAAAAGCGGGTTTCTCTCAGATATTGTAGTAGCGACTGCGCTAGTCAATATGTACAATAAATGTGGAAGCATTGAGAAAGCAAGTAAAGTTTTCATAGAGATGTCTACAAGAACGTTGATATCATGGACTAGTATGATTGCAGGTTTTGCACAGCATGGCCGGACTCAGCAAGCACTGCAGCTCTTTGAGGATATGAGAATTGCAGGAGTTAGACCAAATCAGGTTACTTTTGTGAGTGTTCTATCAGCTTGTAGCCATGCTGGAATGGTCAATGAAGCACTTGGTTACTTTGAGTCCATGAAAAAGGACTACAGGATCAAACCAGTGATGGACCATTATGCCTGCTTGATTGATATGTTCGTGAGGTTGGGTCGGTTAGATGAAGCCTTTGGTCTTGTCAAAAAAATGGATTTTGAACCGAATGAGTTTATATGGTCAACCTTGGTTGCAGGTTGTAGAACTCATGGGAATTTAGACAGGGGATTTTATGCTGCTGAACAGTTGCTCAAACTCAAACCAAAAGATACAGAGACTTATGTCATGTTGTTGAACATGTACATCTCTGCAGAAAGATGGAAGGATGTATCTAGGGTGAGAAAAATGATGAAAGAGGAGAAGCTTGGGAAGCTAGAGGAGTGGAGCTGGATTACCATTAAAGACAAGGTTCATTCATTCAAACCCAATGATAAATCTCATCCTCAAAGTGAAGATGTTCAAAAATACGTTGAAAGTTTGATTGATCAAGTCAAGAGTCTTGGATACAAGGCAGTAGAAAGTTTGGAATTAACTGATGAAGACGCAGAAACGACTTTATTCTCTTCTACATCTTTCCACAGTGAAAAGTTGGCAATTGCTTTTGGATTGTTGAACACGCCAAATGCTGCGCCAATTCGGGTCATCAAGAATATCAGTATGTGCAGGGATTGCCATAATTTTGTTAAGTTCATATCATTACTGACTTCTAGGGAAATAATCATTCGAGATAGCAAGCGCCTTCACAAGTTTGTGAATGGAAAATGTTCATGTGGGGATTTTGGAGCTCTTCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

733

Amino Acids

82.11

Weight (kDa)

8.31

Isoelectric Point (pI)

34.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 138 - 184 3.8e-10 PPR repeat family
PPR PF01535 141 - 170 3.9e-06 PPR repeat
PPR_2 PF13041 423 - 469 2.3e-11 PPR repeat family
PPR PF01535 424 - 453 1.1e-06 PPR repeat
TPR_24 PF23276 424 - 519 8.4e-06 Fungal tetratrico peptide repeats
PPR_long PF17177 438 - 544 4.5e-06 Pentacotripeptide-repeat region of PRORP
PPR_3 PF13812 445 - 505 1e-07 Pentatricopeptide repeat domain
E_motif PF20431 539 - 600 2.3e-12 E motif
DYW_deaminase PF14432 648 - 729 3.5e-29 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016862)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g33990
malus_domestica MD15G1390700.v1.1
prunus_persica Prupe.1G539500_v2.0.a1
pyrus_communis pycom15g34980
rosa_chinensis RchiOBHm_Chr7g0233371
rosa_laevigata RLG00000001274
rosa_multiflora Rmu_sc0008806.1_g000005
rosa_roxburghii Rroxscaffold_3G00227330
rosa_rugosa Rorug07G0280500
rosa_samantha Rh7BG409100 Rh7CG455500
rosa_wichuraiana Rw0G022470 Rw7G035890 Rw7G035930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 279
Acc36I ACCTGC 2 cut(s) 1283, 1592
AccI GTMKAC 1 cut(s) 1256
AccII CGCG 1 cut(s) 463
AciI CCGC 2 cut(s) 463, 1158
AclI AACGTT 1 cut(s) 1265
AclWI GGATC 2 cut(s) 829, 1475
AcoI YGGCCR 3 cut(s) 292, 464, 1309
AcsI RAATTY 4 cut(s) 53, 139, 262, 1621
AcuI CTGAAG 1 cut(s) 1074
AfaI GTAC 6 cut(s) 566, 773, 805, 905, 1205, 1709
AfiI CCNNNNNNNGG 1 cut(s) 265
AflIII ACRYGT 2 cut(s) 108, 1704
AhdI GACNNNNNGTC 1 cut(s) 403
AhlI ACTAGT 1 cut(s) 1280
AjnI CCWGG 2 cut(s) 161, 489
AloI GAACNNNNNNTCC 2 cut(s) 1119, 1151
Alw21I GWGCWC 1 cut(s) 2194
Alw26I GTCTC 2 cut(s) 171, 1676
AlwI GGATC 2 cut(s) 829, 1475
AlwNI CAGNNNCTG 1 cut(s) 23
AoxI GGCC 5 cut(s) 267, 292, 464, 994, 1309
ApeKI GCWGC 3 cut(s) 1330, 1643, 2033
ApoI RAATTY 4 cut(s) 53, 139, 262, 1621
Asp700I GAANNNNTTC 3 cut(s) 1134, 1863, 2170
AspLEI GCGC 4 cut(s) 280, 1192, 2038, 2145
AspS9I GGNCC 1 cut(s) 1483
AsuHPI GGTGA 2 cut(s) 1102, 1756
AvaII GGWCC 1 cut(s) 1483
BalI TGGCCA 1 cut(s) 294
BanII GRGCYC 1 cut(s) 2194
BbsI GAAGAC 1 cut(s) 1953
Bbv12I GWGCWC 1 cut(s) 2194
BbvI GCAGC 3 cut(s) 1342, 1630, 2020
BccI CCATC 4 cut(s) 140, 140, 1474, 1719
BciT130I CCWGG 2 cut(s) 163, 491
BciVI GTATCC 2 cut(s) 822, 1904
BclI TGATCA 1 cut(s) 1891
BcoDI GTCTC 2 cut(s) 171, 1676
BcuI ACTAGT 1 cut(s) 1280
BfaI CTAG 7 cut(s) 533, 933, 1193, 1281, 1740, 1781, 2115
BfmI CTRYAG 4 cut(s) 598, 1328, 1462, 1716
BfoI RGCGCY 1 cut(s) 2146
BfuAI ACCTGC 2 cut(s) 1283, 1592
BfuI GTATCC 2 cut(s) 822, 1904
BisI GCNGC 4 cut(s) 464, 1331, 1644, 2034
BlsI GCNGC 4 cut(s) 465, 1332, 1645, 2035
Bme1390I CCNGG 2 cut(s) 163, 491
Bme18I GGWCC 1 cut(s) 1483
BmeRI GACNNNNNGTC 1 cut(s) 403
BmgT120I GGNCC 1 cut(s) 1483
BmrFI CCNGG 2 cut(s) 163, 491
BmsI GCATC 2 cut(s) 265, 612
BoxI GACNNNNGTC 1 cut(s) 1688
BpiI GAAGAC 1 cut(s) 1953
BpuEI CTTGAG 1 cut(s) 811
BsaBI GATNNNNATC 1 cut(s) 833
BsaI GGTCTC 1 cut(s) 171
BsaJI CCNNGG 2 cut(s) 161, 1593
BsaWI WCCGGW 1 cut(s) 258
BsaXI ACNNNNNCTCC 2 cut(s) 1119, 1149
Bsc4I CCNNNNNNNGG 1 cut(s) 265
Bse1I ACTGG 4 cut(s) 630, 783, 878, 1475
Bse3DI GCAATG 1 cut(s) 990
Bse8I GATNNNNATC 1 cut(s) 833
BseBI CCWGG 2 cut(s) 163, 491
BseDI CCNNGG 2 cut(s) 161, 1593
BseGI GGATG 3 cut(s) 151, 1738, 1846
BseJI GATNNNNATC 1 cut(s) 833
BseLI CCNNNNNNNGG 1 cut(s) 265
BseMI GCAATG 1 cut(s) 990
BseMII CTCAG 3 cut(s) 1157, 1182, 1331
BseNI ACTGG 4 cut(s) 630, 783, 878, 1475
BseRI GAGGAG 2 cut(s) 1778, 1799
BseXI GCAGC 3 cut(s) 1342, 1630, 2020
BseYI CCCAGC 1 cut(s) 506
BsgI GTGCAG 2 cut(s) 843, 2089
Bsh1236I CGCG 1 cut(s) 463
BshFI GGCC 5 cut(s) 269, 294, 466, 996, 1311
BsiHKAI GWGCWC 1 cut(s) 2194
BsiSI CCGG 2 cut(s) 259, 1312
BslI CCNNNNNNNGG 1 cut(s) 265
BsmAI GTCTC 2 cut(s) 171, 1676
BsmI GAATGC 2 cut(s) 553, 985
BsnI GGCC 5 cut(s) 269, 294, 466, 996, 1311
Bso31I GGTCTC 1 cut(s) 171
Bsp1286I GDGCHC 1 cut(s) 2194
Bsp1407I TGTACA 3 cut(s) 803, 1203, 1707
Bsp143I GATC 5 cut(s) 834, 1012, 1027, 1467, 1891
BspACI CCGC 2 cut(s) 463, 1158
BspANI GGCC 5 cut(s) 269, 294, 466, 996, 1311
BspCNI CTCAG 3 cut(s) 1156, 1181, 1330
BspFNI CGCG 1 cut(s) 463
BspMAI CTGCAG 2 cut(s) 1332, 1720
BspMI ACCTGC 2 cut(s) 1283, 1592
BspPI GGATC 2 cut(s) 829, 1475
BspQI GCTCTTC 1 cut(s) 2199
BspTNI GGTCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 990
BsrGI TGTACA 3 cut(s) 803, 1203, 1707
BsrI ACTGG 4 cut(s) 630, 783, 878, 1475
BssECI CCNNGG 2 cut(s) 161, 1593
BssMI GATC 5 cut(s) 834, 1012, 1027, 1467, 1891
BssT1I CCWWGG 1 cut(s) 1593
Bst2UI CCWGG 2 cut(s) 163, 491
Bst4CI ACNGT 2 cut(s) 1653, 1988
Bst6I CTCTTC 2 cut(s) 1975, 2199
BstAPI GCANNNNNTGC 6 cut(s) 286, 989, 998, 1298, 1327, 2076
BstAUI TGTACA 3 cut(s) 803, 1203, 1707
BstC8I GCNNGC 5 cut(s) 594, 994, 1323, 1495, 2141
BstDEI CTNAG 4 cut(s) 210, 1143, 1168, 1317
BstF5I GGATG 3 cut(s) 151, 1738, 1846
BstFNI CGCG 1 cut(s) 463
BstH2I RGCGCY 1 cut(s) 2146
BstHHI GCGC 4 cut(s) 280, 1192, 2038, 2145
BstKTI GATC 5 cut(s) 837, 1015, 1030, 1470, 1894
BstMAI GTCTC 2 cut(s) 171, 1676
BstMBI GATC 5 cut(s) 834, 1012, 1027, 1467, 1891
BstNI CCWGG 2 cut(s) 163, 491
BstNSI RCATGY 2 cut(s) 596, 1708
BstPAI GACNNNNGTC 1 cut(s) 1688
BstSCI CCNGG 2 cut(s) 161, 489
BstSFI CTRYAG 4 cut(s) 598, 1328, 1462, 1716
BstUI CGCG 1 cut(s) 463
BstV1I GCAGC 3 cut(s) 1342, 1630, 2020
BstV2I GAAGAC 1 cut(s) 1953
BstX2I RGATCY 1 cut(s) 834
BstXI CCANNNNNNTGG 1 cut(s) 169
BstYI RGATCY 1 cut(s) 834
BsuI GTATCC 2 cut(s) 822, 1904
BsuRI GGCC 5 cut(s) 269, 294, 466, 996, 1311
BtgZI GCGATG 1 cut(s) 118
BtsCI GGATG 3 cut(s) 151, 1738, 1846
BtsI GCAGTG 1 cut(s) 1325
BtsIMutI CAGTG 6 cut(s) 735, 790, 885, 1325, 1482, 1993
BveI ACCTGC 2 cut(s) 1283, 1592
Cac8I GCNNGC 5 cut(s) 594, 994, 1323, 1495, 2141
CaiI CAGNNNCTG 1 cut(s) 23
CfoI GCGC 4 cut(s) 280, 1192, 2038, 2145
Cfr13I GGNCC 1 cut(s) 1483
CseI GACGC 1 cut(s) 1958
Csp6I GTAC 6 cut(s) 565, 772, 804, 904, 1204, 1708
CspCI CAANNNNNGTGG 2 cut(s) 1195, 1230
CviQI GTAC 6 cut(s) 565, 772, 804, 904, 1204, 1708
DdeI CTNAG 4 cut(s) 210, 1143, 1168, 1317
DpnI GATC 5 cut(s) 836, 1014, 1029, 1469, 1893
DpnII GATC 5 cut(s) 834, 1012, 1027, 1467, 1891
DraI TTTAAA 1 cut(s) 691
DriI GACNNNNNGTC 1 cut(s) 403
EaeI YGGCCR 3 cut(s) 292, 464, 1309
Eam1104I CTCTTC 2 cut(s) 1975, 2199
Eam1105I GACNNNNNGTC 1 cut(s) 403
EarI CTCTTC 2 cut(s) 1975, 2199
Ecl136II GAGCTC 1 cut(s) 2192
Eco130I CCWWGG 1 cut(s) 1593
Eco24I GRGCYC 1 cut(s) 2194
Eco31I GGTCTC 1 cut(s) 171
Eco32I GATATC 1 cut(s) 1272
Eco47I GGWCC 1 cut(s) 1483
Eco53kI GAGCTC 1 cut(s) 2192
Eco57I CTGAAG 1 cut(s) 1074
EcoICRI GAGCTC 1 cut(s) 2192
EcoRI GAATTC 2 cut(s) 53, 262
EcoRII CCWGG 2 cut(s) 161, 489
EcoRV GATATC 1 cut(s) 1272
EcoT14I CCWWGG 1 cut(s) 1593
EcoT38I GRGCYC 1 cut(s) 2194
ErhI CCWWGG 1 cut(s) 1593
FalI AAGNNNNNCTT 2 cut(s) 1014, 1046
FauI CCCGC 1 cut(s) 1151
FbaI TGATCA 1 cut(s) 1891
FblI GTMKAC 1 cut(s) 1256
Fnu4HI GCNGC 4 cut(s) 464, 1331, 1644, 2034
FokI GGATG 3 cut(s) 158, 1745, 1833
FriOI GRGCYC 1 cut(s) 2194
Fsp4HI GCNGC 4 cut(s) 464, 1331, 1644, 2034
FspBI CTAG 7 cut(s) 533, 933, 1193, 1281, 1740, 1781, 2115
FspI TGCGCA 1 cut(s) 279
GlaI GCGC 4 cut(s) 279, 1191, 2037, 2144
GluI GCNGC 4 cut(s) 464, 1331, 1644, 2034
GsaI CCCAGC 1 cut(s) 510
HaeII RGCGCY 1 cut(s) 2146
HaeIII GGCC 5 cut(s) 269, 294, 466, 996, 1311
HapII CCGG 2 cut(s) 259, 1312
HgaI GACGC 1 cut(s) 1958
HhaI GCGC 4 cut(s) 280, 1192, 2038, 2145
Hin6I GCGC 4 cut(s) 278, 1190, 2036, 2143
HinP1I GCGC 4 cut(s) 278, 1190, 2036, 2143
HincII GTYRAC 1 cut(s) 1590
HindII GTYRAC 1 cut(s) 1590
HindIII AAGCTT 2 cut(s) 41, 1769
HinfI GANTC 8 cut(s) 196, 218, 369, 680, 1081, 1315, 1445, 1903
HpaII CCGG 2 cut(s) 259, 1312
HphI GGTGA 2 cut(s) 1102, 1756
Hpy166II GTNNAC 5 cut(s) 429, 454, 774, 1257, 1590
Hpy188III TCNNGA 7 cut(s) 170, 200, 1072, 1513, 1900, 2053, 2132
Hpy8I GTNNAC 5 cut(s) 429, 454, 774, 1257, 1590
HpyAV CCTTC 5 cut(s) 24, 884, 1123, 1723, 2156
HpyCH4III ACNGT 2 cut(s) 1653, 1988
HpyCH4IV ACGT 3 cut(s) 108, 1265, 1875
HpyF3I CTNAG 4 cut(s) 210, 1143, 1168, 1317
HpySE526I ACGT 3 cut(s) 108, 1265, 1875
HspAI GCGC 4 cut(s) 278, 1190, 2036, 2143
Ksp22I TGATCA 1 cut(s) 1891
Kzo9I GATC 5 cut(s) 834, 1012, 1027, 1467, 1891
LguI GCTCTTC 1 cut(s) 2199
LmnI GCTCC 2 cut(s) 1791, 2189
Lsp1109I GCAGC 3 cut(s) 1342, 1630, 2020
LweI GCATC 2 cut(s) 265, 612
MaeI CTAG 7 cut(s) 533, 933, 1193, 1281, 1740, 1781, 2115
MaeII ACGT 3 cut(s) 108, 1265, 1875
MaeIII GTNAC 3 cut(s) 331, 1375, 1436
MalI GATC 5 cut(s) 836, 1014, 1029, 1469, 1893
MboI GATC 5 cut(s) 834, 1012, 1027, 1467, 1891
MboII GAAGA 7 cut(s) 75, 546, 1034, 1871, 1958, 1962, 2186
MfeI CAATTG 2 cut(s) 587, 2001
MflI RGATCY 1 cut(s) 834
MhlI GDGCHC 1 cut(s) 2194
MlsI TGGCCA 1 cut(s) 294
MluNI TGGCCA 1 cut(s) 294
MlyI GAGTC 4 cut(s) 227, 1309, 1454, 1912
MmeI TCCRAC 1 cut(s) 480
Mox20I TGGCCA 1 cut(s) 294
MroXI GAANNNNTTC 3 cut(s) 1134, 1863, 2170
MscI TGGCCA 1 cut(s) 294
MslI CAYNNNNRTG 2 cut(s) 740, 1250
Msp20I TGGCCA 1 cut(s) 294
MspI CCGG 2 cut(s) 259, 1312
MspR9I CCNGG 2 cut(s) 163, 491
MunI CAATTG 2 cut(s) 587, 2001
Mva1269I GAATGC 2 cut(s) 553, 985
MvaI CCWGG 2 cut(s) 163, 491
MvnI CGCG 1 cut(s) 463
NdeII GATC 5 cut(s) 834, 1012, 1027, 1467, 1891
NmuCI GTSAC 1 cut(s) 331
NsbI TGCGCA 1 cut(s) 279
NspI RCATGY 2 cut(s) 596, 1708
PaeI GCATGC 1 cut(s) 596
PciI ACATGT 1 cut(s) 1704
PciSI GCTCTTC 1 cut(s) 2199
PctI GAATGC 2 cut(s) 553, 985
PdmI GAANNNNTTC 3 cut(s) 1134, 1863, 2170
PfeI GAWTC 4 cut(s) 196, 369, 680, 1081
PfoI TCCNGGA 1 cut(s) 489
PkrI GCNGC 4 cut(s) 465, 1332, 1645, 2035
PleI GAGTC 4 cut(s) 226, 1309, 1453, 1911
PpsI GAGTC 4 cut(s) 226, 1309, 1453, 1911
PscI ACATGT 1 cut(s) 1704
PshAI GACNNNNGTC 1 cut(s) 1688
Psp124BI GAGCTC 1 cut(s) 2194
Psp1406I AACGTT 1 cut(s) 1265
Psp6I CCWGG 2 cut(s) 161, 489
PspFI CCCAGC 1 cut(s) 506
PspGI CCWGG 2 cut(s) 161, 489
PspPI GGNCC 1 cut(s) 1483
PstI CTGCAG 2 cut(s) 1332, 1720
PstNI CAGNNNCTG 1 cut(s) 23
PsuI RGATCY 1 cut(s) 834
RsaI GTAC 6 cut(s) 566, 773, 805, 905, 1205, 1709
RsaNI GTAC 6 cut(s) 565, 772, 804, 904, 1204, 1708
RseI CAYNNNNRTG 2 cut(s) 740, 1250
SacI GAGCTC 1 cut(s) 2194
SapI GCTCTTC 1 cut(s) 2199
SatI GCNGC 4 cut(s) 464, 1331, 1644, 2034
Sau3AI GATC 5 cut(s) 834, 1012, 1027, 1467, 1891
Sau96I GGNCC 1 cut(s) 1483
SchI GAGTC 4 cut(s) 227, 1309, 1454, 1912
ScrFI CCNGG 2 cut(s) 163, 491
SduI GDGCHC 1 cut(s) 2194
SfaNI GCATC 2 cut(s) 265, 612
SfcI CTRYAG 4 cut(s) 598, 1328, 1462, 1716
SinI GGWCC 1 cut(s) 1483
SmiMI CAYNNNNRTG 2 cut(s) 740, 1250
SmlI CTYRAG 1 cut(s) 790
SmoI CTYRAG 1 cut(s) 790
SpeI ACTAGT 1 cut(s) 1280
SphI GCATGC 1 cut(s) 596
SsiI CCGC 2 cut(s) 463, 1158
SspMI CTAG 7 cut(s) 533, 933, 1193, 1281, 1740, 1781, 2115
SstI GAGCTC 1 cut(s) 2194
StyD4I CCNGG 2 cut(s) 161, 489
StyI CCWWGG 1 cut(s) 1593
TaaI ACNGT 2 cut(s) 1653, 1988
TaiI ACGT 3 cut(s) 111, 1268, 1878
TaqI TCGA 3 cut(s) 199, 569, 2131
TatI WGTACW 5 cut(s) 564, 771, 803, 1203, 1707
TauI GCSGC 1 cut(s) 466
TfiI GAWTC 4 cut(s) 196, 369, 680, 1081
TscAI CASTG 6 cut(s) 742, 790, 885, 1332, 1482, 1993
TseFI GTSAC 1 cut(s) 331
TseI GCWGC 3 cut(s) 1330, 1643, 2033
Tsp45I GTSAC 1 cut(s) 331
TspRI CASTG 6 cut(s) 742, 790, 885, 1332, 1482, 1993
VpaK11BI GGWCC 1 cut(s) 1483
XapI RAATTY 4 cut(s) 53, 139, 262, 1621
XceI RCATGY 2 cut(s) 596, 1708
XmiI GTMKAC 1 cut(s) 1256
XmnI GAANNNNTTC 3 cut(s) 1134, 1863, 2170
XspI CTAG 7 cut(s) 533, 933, 1193, 1281, 1740, 1781, 2115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.