Rorug07G0280500

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0016862
Physical Location & Seq
Forward (+)
27109390 .. 27109967
578 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0280500.1

Sequence Viewer

Length: 435 bp
ATGGGTCCTCTATCGAAAACTATGATTCCCCTTGTGCTGTTGTTCTGCATCCTCACAACCACCATTGAGCACACACATGCTCTTACGTTTTGCAAAATATTTCGATGCCCAAAGGACACCACCGTTAGAGTAACCAACCGTTTGGAAAGCAAGGAGGTCCTGACCGTCCACTGTAAATCGAAAGATGATGACATCGGTGAACAAAAACTTGTGTTTTATAACGACTTTCAATTCAAGTTTAAGACAGATTTAGGCATAGTGTATAGCAGGACATTATTCTTTTGTAGCTTTCAATGGGGGAATGAATTCAAAAGGGTCGATATCTTCATTGCTAACAGGGATCATTGCACTGAATGCTTTTGGGATGTCTATGAAAGAGGCCCGTGTTTGGAATATAACCAAGGTCAAGTTGGTTATTGCCTACCGTGGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DYW_deaminase PPR PPR_2

Protein Analysis

144

Amino Acids

16.97

Weight (kDa)

7.53

Isoelectric Point (pI)

17.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Self-incomp_S1 PF05938 41 - 143 7.1e-25 Plant self-incompatibility protein S1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016862)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g33990
malus_domestica MD15G1390700.v1.1
prunus_persica Prupe.1G539500_v2.0.a1
pyrus_communis pycom15g34980
rosa_chinensis RchiOBHm_Chr7g0233371
rosa_laevigata RLG00000001274
rosa_multiflora Rmu_sc0008806.1_g000005
rosa_roxburghii Rroxscaffold_3G00227330
rosa_rugosa Rorug07G0280500
rosa_samantha Rh7BG409100 Rh7CG455500
rosa_wichuraiana Rw0G022470 Rw7G035890 Rw7G035930

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 219
AclWI GGATC 1 cut(s) 348
AcsI RAATTY 1 cut(s) 305
AfiI CCNNNNNNNGG 1 cut(s) 388
AgsI TTSAA 4 cut(s) 230, 235, 293, 310
AluBI AGCT 1 cut(s) 288
AluI AGCT 1 cut(s) 288
Alw21I GWGCWC 1 cut(s) 72
AlwI GGATC 1 cut(s) 348
AoxI GGCC 1 cut(s) 379
ApoI RAATTY 1 cut(s) 305
Asp700I GAANNNNTTC 1 cut(s) 305
AspS9I GGNCC 3 cut(s) 5, 157, 380
AsuHPI GGTGA 1 cut(s) 209
AvaII GGWCC 2 cut(s) 5, 157
Bbv12I GWGCWC 1 cut(s) 72
Bme18I GGWCC 2 cut(s) 5, 157
BmgT120I GGNCC 3 cut(s) 5, 157, 380
BmiI GGNNCC 1 cut(s) 6
BmsI GCATC 2 cut(s) 57, 95
BsaJI CCNNGG 2 cut(s) 400, 425
Bsc4I CCNNNNNNNGG 1 cut(s) 388
Bse3DI GCAATG 2 cut(s) 327, 343
BseDI CCNNGG 2 cut(s) 400, 425
BseGI GGATG 2 cut(s) 48, 370
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMI GCAATG 2 cut(s) 327, 343
BshFI GGCC 1 cut(s) 381
BsiHKAI GWGCWC 1 cut(s) 72
BslI CCNNNNNNNGG 1 cut(s) 388
BsmI GAATGC 1 cut(s) 359
BsnI GGCC 1 cut(s) 381
Bsp1286I GDGCHC 1 cut(s) 72
Bsp143I GATC 1 cut(s) 340
BspANI GGCC 1 cut(s) 381
BspLI GGNNCC 1 cut(s) 6
BspPI GGATC 1 cut(s) 348
BsrDI GCAATG 2 cut(s) 327, 343
BssECI CCNNGG 2 cut(s) 400, 425
BssMI GATC 1 cut(s) 340
BssT1I CCWWGG 1 cut(s) 400
Bst4CI ACNGT 5 cut(s) 124, 140, 166, 173, 426
BstAPI GCANNNNNTGC 1 cut(s) 354
BstDSI CCRYGG 1 cut(s) 425
BstF5I GGATG 2 cut(s) 48, 370
BstKTI GATC 1 cut(s) 343
BstMBI GATC 1 cut(s) 340
BstMWI GCNNNNNNNGC 1 cut(s) 354
BstNSI RCATGY 1 cut(s) 80
BstXI CCANNNNNNTGG 1 cut(s) 142
BsuRI GGCC 1 cut(s) 381
BtgI CCRYGG 1 cut(s) 425
BtsCI GGATG 2 cut(s) 48, 370
BtsIMutI CAGTG 2 cut(s) 169, 348
Cfr13I GGNCC 3 cut(s) 5, 157, 380
CviAII CATG 1 cut(s) 77
CviJI RGCY 2 cut(s) 288, 381
CviKI_1 RGCY 2 cut(s) 288, 381
DpnI GATC 1 cut(s) 342
DpnII GATC 1 cut(s) 340
Eco130I CCWWGG 1 cut(s) 400
Eco32I GATATC 1 cut(s) 322
Eco47I GGWCC 2 cut(s) 5, 157
EcoO109I RGGNCCY 2 cut(s) 5, 157
EcoRI GAATTC 1 cut(s) 305
EcoRV GATATC 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 400
ErhI CCWWGG 1 cut(s) 400
FaeI CATG 1 cut(s) 80
FaiI YATR 7 cut(s) 23, 78, 219, 257, 264, 372, 396
FatI CATG 1 cut(s) 76
FokI GGATG 2 cut(s) 35, 377
HaeIII GGCC 1 cut(s) 381
Hin1II CATG 1 cut(s) 80
HinfI GANTC 1 cut(s) 25
HphI GGTGA 1 cut(s) 209
Hpy166II GTNNAC 2 cut(s) 169, 200
Hpy188III TCNNGA 1 cut(s) 160
Hpy8I GTNNAC 2 cut(s) 169, 200
HpyCH4III ACNGT 5 cut(s) 124, 140, 166, 173, 426
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 3 cut(s) 48, 93, 348
HpyF10VI GCNNNNNNNGC 1 cut(s) 354
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 1 cut(s) 80
Kzo9I GATC 1 cut(s) 340
LpnPI CCDG 3 cut(s) 173, 253, 322
LweI GCATC 2 cut(s) 57, 95
MaeII ACGT 1 cut(s) 86
MaeIII GTNAC 1 cut(s) 130
MalI GATC 1 cut(s) 342
MboI GATC 1 cut(s) 340
MboII GAAGA 1 cut(s) 316
MhlI GDGCHC 1 cut(s) 72
MluCI AATT 2 cut(s) 230, 305
MnlI CCTC 4 cut(s) 18, 62, 148, 371
MroXI GAANNNNTTC 1 cut(s) 305
MseI TTAA 1 cut(s) 240
MslI CAYNNNNRTG 1 cut(s) 75
Mva1269I GAATGC 1 cut(s) 359
MwoI GCNNNNNNNGC 1 cut(s) 354
NdeII GATC 1 cut(s) 340
NlaIII CATG 1 cut(s) 80
NlaIV GGNNCC 1 cut(s) 6
NspI RCATGY 1 cut(s) 80
PctI GAATGC 1 cut(s) 359
PdmI GAANNNNTTC 1 cut(s) 305
PfeI GAWTC 1 cut(s) 25
PpuMI RGGWCCY 2 cut(s) 5, 157
PsiI TTATAA 1 cut(s) 219
Psp5II RGGWCCY 2 cut(s) 5, 157
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 3 cut(s) 5, 157, 380
PspPPI RGGWCCY 2 cut(s) 5, 157
RseI CAYNNNNRTG 1 cut(s) 75
SaqAI TTAA 1 cut(s) 240
Sau3AI GATC 1 cut(s) 340
Sau96I GGNCC 3 cut(s) 5, 157, 380
SduI GDGCHC 1 cut(s) 72
SetI ASST 4 cut(s) 89, 159, 290, 406
SfaNI GCATC 2 cut(s) 57, 95
SinI GGWCC 2 cut(s) 5, 157
SmiMI CAYNNNNRTG 1 cut(s) 75
Sse9I AATT 2 cut(s) 230, 305
SspI AATATT 1 cut(s) 99
StyI CCWWGG 1 cut(s) 400
TaaI ACNGT 5 cut(s) 124, 140, 166, 173, 426
TaiI ACGT 1 cut(s) 89
TaqI TCGA 4 cut(s) 14, 103, 179, 318
TasI AATT 2 cut(s) 230, 305
TfiI GAWTC 1 cut(s) 25
Tru1I TTAA 1 cut(s) 240
Tru9I TTAA 1 cut(s) 240
TscAI CASTG 2 cut(s) 176, 355
TspDTI ATGAA 3 cut(s) 316, 318, 387
TspRI CASTG 2 cut(s) 176, 355
VpaK11BI GGWCC 2 cut(s) 5, 157
XapI RAATTY 1 cut(s) 305
XceI RCATGY 1 cut(s) 80
XcmI CCANNNNNNNNNTGG 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.