RLG00000001307

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0018113
Physical Location & Seq
Reverse (-)
13889027 .. 13890525
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001307

Sequence Viewer

Length: 486 bp
ATGATTGAATTGGGCGGCAGAATCGATGTGGTTGACGACGGTGCTGGAATCGATGTCGTTGTCCAGGTTGTCATCAACATTGGAGTTCAGATGCGGTGGAGGAGGCGATGGAAGAGGCTGCAAGCAAAAGCACAGAAGAGGAGGAGGATGGAAATCCAGAGCCCCGTCGAGCAATCCGTGAGGTCCCTCGCTGTTGGAGGAGGCAGCAGCAAGGCGTTTTGCAAGTGCGGCCAAGGGTGGAAGTGCGTCATCACGAGGACCGAGGGATCTGAAGCCGGCAAGGCCTTCTTCAAATGTGGCGAAAGTTGCACTTGTGTCATAGACGGAGAAGGAACGGTGAAGGAGCTGGAAAAACTGGGTCCAAACGAAGCATACTGCGAGTGTGGGGAGGGATGGAGTTGTGTCGTCACCAAGGTTGAAGGGCCCGAAGCTGACAAGGCGTTCATCGAATGTGCTGATGGCTGTACCTGTGTTACTACAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

162

Amino Acids

17.43

Weight (kDa)

7.38

Isoelectric Point (pI)

70.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018113)

Species Orthologous Gene IDs
malus_domestica MD12G1166300.v1.1
prunus_persica Prupe.5G034700_v2.0.a1
pyrus_communis pycom12g15840
rosa_chinensis RchiOBHm_Chr7g0232991
rosa_laevigata RLG00000001307 RLG00000017952
rosa_roxburghii Rroxscaffold_2G00131780 Rroxscaffold_3G00227780
rosa_rugosa Rorug01G0313000 Rorug07G0277200
rosa_wichuraiana Rw0G019180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 15, 94, 228
AclWI GGATC 1 cut(s) 274
AcoI YGGCCR 1 cut(s) 229
AcuI CTGAAG 1 cut(s) 291
AfaI GTAC 1 cut(s) 466
AgsI TTSAA 3 cut(s) 8, 292, 419
AjnI CCWGG 1 cut(s) 63
AluBI AGCT 2 cut(s) 346, 431
AluI AGCT 2 cut(s) 346, 431
AlwI GGATC 1 cut(s) 274
AoxI GGCC 3 cut(s) 229, 282, 422
ApaI GGGCCC 1 cut(s) 426
ApeKI GCWGC 3 cut(s) 118, 204, 207
AspS9I GGNCC 5 cut(s) 183, 258, 359, 422, 423
AsuHPI GGTGA 2 cut(s) 349, 400
AvaII GGWCC 3 cut(s) 183, 258, 359
BaeGI GKGCMC 1 cut(s) 426
BanII GRGCYC 2 cut(s) 164, 426
BauI CACGAG 1 cut(s) 253
BbvI GCAGC 3 cut(s) 105, 216, 219
BccI CCATC 4 cut(s) 102, 142, 387, 452
BciT130I CCWGG 1 cut(s) 65
BfmI CTRYAG 1 cut(s) 477
BglI GCCNNNNNGGC 1 cut(s) 281
BisI GCNGC 5 cut(s) 16, 119, 205, 208, 229
BlsI GCNGC 5 cut(s) 17, 120, 206, 209, 230
Bme1390I CCNGG 1 cut(s) 65
Bme18I GGWCC 3 cut(s) 183, 258, 359
BmgT120I GGNCC 5 cut(s) 183, 258, 359, 422, 423
BmiI GGNNCC 3 cut(s) 185, 360, 424
BmrFI CCNGG 1 cut(s) 65
BmrI ACTGGG 1 cut(s) 365
BmsI GCATC 1 cut(s) 81
BmuI ACTGGG 1 cut(s) 365
Bsa29I ATCGAT 2 cut(s) 24, 51
BsaBI GATNNNNATC 1 cut(s) 152
BsaJI CCNNGG 3 cut(s) 232, 261, 411
Bse118I RCCGGY 1 cut(s) 275
Bse1I ACTGG 1 cut(s) 360
Bse8I GATNNNNATC 1 cut(s) 152
BseBI CCWGG 1 cut(s) 65
BseCI ATCGAT 2 cut(s) 24, 51
BseDI CCNNGG 3 cut(s) 232, 261, 411
BseGI GGATG 2 cut(s) 153, 398
BseJI GATNNNNATC 1 cut(s) 152
BseNI ACTGG 1 cut(s) 360
BseRI GAGGAG 4 cut(s) 115, 154, 157, 213
BseSI GKGCMC 1 cut(s) 426
BseXI GCAGC 3 cut(s) 105, 216, 219
BshFI GGCC 3 cut(s) 231, 284, 424
BshVI ATCGAT 2 cut(s) 24, 51
BsiSI CCGG 1 cut(s) 276
BslFI GGGAC 1 cut(s) 169
BsmFI GGGAC 1 cut(s) 169
BsnI GGCC 3 cut(s) 231, 284, 424
Bsp120I GGGCCC 1 cut(s) 422
Bsp1286I GDGCHC 2 cut(s) 164, 426
Bsp143I GATC 1 cut(s) 266
BspACI CCGC 3 cut(s) 15, 94, 228
BspANI GGCC 3 cut(s) 231, 284, 424
BspDI ATCGAT 2 cut(s) 24, 51
BspLI GGNNCC 3 cut(s) 185, 360, 424
BspPI GGATC 1 cut(s) 274
BsrFI RCCGGY 1 cut(s) 275
BsrI ACTGG 1 cut(s) 360
BssAI RCCGGY 1 cut(s) 275
BssECI CCNNGG 3 cut(s) 232, 261, 411
BssMI GATC 1 cut(s) 266
BssSI CACGAG 1 cut(s) 253
BssT1I CCWWGG 2 cut(s) 232, 411
Bst2BI CACGAG 1 cut(s) 253
Bst2UI CCWGG 1 cut(s) 65
Bst4CI ACNGT 2 cut(s) 41, 337
Bst6I CTCTTC 2 cut(s) 107, 131
BstC8I GCNNGC 2 cut(s) 123, 277
BstF5I GGATG 2 cut(s) 153, 398
BstKTI GATC 1 cut(s) 269
BstMBI GATC 1 cut(s) 266
BstMWI GCNNNNNNNGC 4 cut(s) 228, 281, 306, 437
BstNI CCWGG 1 cut(s) 65
BstSCI CCNGG 1 cut(s) 63
BstSFI CTRYAG 1 cut(s) 477
BstSLI GKGCMC 1 cut(s) 426
BstV1I GCAGC 3 cut(s) 105, 216, 219
BstX2I RGATCY 1 cut(s) 266
BstYI RGATCY 1 cut(s) 266
Bsu15I ATCGAT 2 cut(s) 24, 51
BsuRI GGCC 3 cut(s) 231, 284, 424
BsuTUI ATCGAT 2 cut(s) 24, 51
BtgZI GCGATG 1 cut(s) 121
BtsCI GGATG 2 cut(s) 153, 398
Cac8I GCNNGC 2 cut(s) 123, 277
Cfr10I RCCGGY 1 cut(s) 275
Cfr13I GGNCC 5 cut(s) 183, 258, 359, 422, 423
ClaI ATCGAT 2 cut(s) 24, 51
CseI GACGC 1 cut(s) 235
Csp6I GTAC 1 cut(s) 465
CviQI GTAC 1 cut(s) 465
DpnI GATC 1 cut(s) 268
DpnII GATC 1 cut(s) 266
EaeI YGGCCR 1 cut(s) 229
Eam1104I CTCTTC 2 cut(s) 107, 131
EarI CTCTTC 2 cut(s) 107, 131
Eco130I CCWWGG 2 cut(s) 232, 411
Eco147I AGGCCT 1 cut(s) 284
Eco24I GRGCYC 2 cut(s) 164, 426
Eco47I GGWCC 3 cut(s) 183, 258, 359
Eco57I CTGAAG 1 cut(s) 291
EcoO109I RGGNCCY 2 cut(s) 183, 422
EcoRII CCWGG 1 cut(s) 63
EcoT14I CCWWGG 2 cut(s) 232, 411
EcoT38I GRGCYC 2 cut(s) 164, 426
ErhI CCWWGG 2 cut(s) 232, 411
FaiI YATR 2 cut(s) 320, 373
FalI AAGNNNNNCTT 4 cut(s) 272, 304, 295, 327
FaqI GGGAC 1 cut(s) 169
Fnu4HI GCNGC 5 cut(s) 16, 119, 205, 208, 229
FokI GGATG 2 cut(s) 160, 405
FriOI GRGCYC 2 cut(s) 164, 426
Fsp4HI GCNGC 5 cut(s) 16, 119, 205, 208, 229
GluI GCNGC 5 cut(s) 16, 119, 205, 208, 229
HaeIII GGCC 3 cut(s) 231, 284, 424
HapII CCGG 1 cut(s) 276
HgaI GACGC 1 cut(s) 235
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 2 cut(s) 21, 48
HpaII CCGG 1 cut(s) 276
HphI GGTGA 2 cut(s) 349, 400
Hpy166II GTNNAC 1 cut(s) 34
Hpy188I TCNGA 2 cut(s) 90, 271
Hpy188III TCNNGA 2 cut(s) 157, 253
Hpy8I GTNNAC 1 cut(s) 34
Hpy99I CGWCG 2 cut(s) 41, 170
HpyAV CCTTC 4 cut(s) 295, 323, 334, 413
HpyCH4III ACNGT 2 cut(s) 41, 337
HpyCH4V TGCA 3 cut(s) 121, 222, 309
HpyF10VI GCNNNNNNNGC 4 cut(s) 228, 281, 306, 437
KroI GCCGGC 1 cut(s) 275
KroNI GCCGGC 1 cut(s) 277
Kzo9I GATC 1 cut(s) 266
LmnI GCTCC 1 cut(s) 343
LpnPI CCDG 8 cut(s) 30, 50, 77, 170, 289, 332, 341, 481
Lsp1109I GCAGC 3 cut(s) 105, 216, 219
LweI GCATC 1 cut(s) 81
MaeIII GTNAC 2 cut(s) 406, 472
MalI GATC 1 cut(s) 268
MboI GATC 1 cut(s) 266
MboII GAAGA 3 cut(s) 124, 148, 280
MflI RGATCY 1 cut(s) 266
MhlI GDGCHC 2 cut(s) 164, 426
MluCI AATT 1 cut(s) 8
MmeI TCCRAC 1 cut(s) 175
MroNI GCCGGC 1 cut(s) 275
MspI CCGG 1 cut(s) 276
MspR9I CCNGG 1 cut(s) 65
MvaI CCWGG 1 cut(s) 65
MwoI GCNNNNNNNGC 4 cut(s) 228, 281, 306, 437
NaeI GCCGGC 1 cut(s) 277
NdeII GATC 1 cut(s) 266
NgoMIV GCCGGC 1 cut(s) 275
NlaIV GGNNCC 3 cut(s) 185, 360, 424
NmuCI GTSAC 1 cut(s) 406
PceI AGGCCT 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 174
PdiI GCCGGC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 21, 48
PkrI GCNGC 5 cut(s) 17, 120, 206, 209, 230
PpuMI RGGWCCY 1 cut(s) 183
Psp5II RGGWCCY 1 cut(s) 183
Psp6I CCWGG 1 cut(s) 63
PspGI CCWGG 1 cut(s) 63
PspN4I GGNNCC 3 cut(s) 185, 360, 424
PspOMI GGGCCC 1 cut(s) 422
PspPI GGNCC 5 cut(s) 183, 258, 359, 422, 423
PspPPI RGGWCCY 1 cut(s) 183
PsuI RGATCY 1 cut(s) 266
RsaI GTAC 1 cut(s) 466
RsaNI GTAC 1 cut(s) 465
SatI GCNGC 5 cut(s) 16, 119, 205, 208, 229
Sau3AI GATC 1 cut(s) 266
Sau96I GGNCC 5 cut(s) 183, 258, 359, 422, 423
ScrFI CCNGG 1 cut(s) 65
SduI GDGCHC 2 cut(s) 164, 426
SetI ASST 6 cut(s) 69, 185, 348, 417, 433, 470
SfaNI GCATC 1 cut(s) 81
SfcI CTRYAG 1 cut(s) 477
SinI GGWCC 3 cut(s) 183, 258, 359
Sse9I AATT 1 cut(s) 8
SseBI AGGCCT 1 cut(s) 284
SsiI CCGC 3 cut(s) 15, 94, 228
StuI AGGCCT 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 63
StyI CCWWGG 2 cut(s) 232, 411
TaaI ACNGT 2 cut(s) 41, 337
TaqI TCGA 4 cut(s) 24, 51, 168, 447
TaqII GACCGA 1 cut(s) 275
TasI AATT 1 cut(s) 8
TauI GCSGC 2 cut(s) 18, 231
TfiI GAWTC 2 cut(s) 21, 48
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 3 cut(s) 118, 204, 207
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 1 cut(s) 433
TspGWI ACGGA 2 cut(s) 166, 339
VpaK11BI GGWCC 3 cut(s) 183, 258, 359
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.