Rw0G019180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00862
OG0018113
Physical Location & Seq
Reverse (-)
7684 .. 8780
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G019180.1

Sequence Viewer

Length: 339 bp
ATGGAAATCCAGAGCCCCGTCGAGCAATCCGTGAGGTCCCTCGCTGTTGGAGGAGGCAGCAGCAAGGCGTTTTGCAAGTGCGGCCAAGGGTGGAAGTGCGTCATCACGAGGACCGAGGGATCTGAAGCCGGCAAGGCCTTCTTCAAATGTGGCGAAAGTTGCACTTGTGTCATAGACGGAGAAGGAACGGTGAAGGAGCTGGAAAAACTGGGTCCAAACGAAGCATACTGCGAGTGTGGGGAGGGATGGAGTTGTGTCGTCACCAAGGTTGAAGGGCCCGAAGCTGACAAGGCGTTCATCGAATGTGCTGATGGCTGTACCTGTGTTACTACAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

11.7

Weight (kDa)

4.66

Isoelectric Point (pI)

53.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018113)

Species Orthologous Gene IDs
malus_domestica MD12G1166300.v1.1
prunus_persica Prupe.5G034700_v2.0.a1
pyrus_communis pycom12g15840
rosa_chinensis RchiOBHm_Chr7g0232991
rosa_laevigata RLG00000001307 RLG00000017952
rosa_roxburghii Rroxscaffold_2G00131780 Rroxscaffold_3G00227780
rosa_rugosa Rorug01G0313000 Rorug07G0277200
rosa_wichuraiana Rw0G019180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 81
AclWI GGATC 1 cut(s) 127
AcoI YGGCCR 1 cut(s) 82
AcuI CTGAAG 1 cut(s) 144
AfaI GTAC 1 cut(s) 319
AgsI TTSAA 2 cut(s) 145, 272
AluBI AGCT 2 cut(s) 199, 284
AluI AGCT 2 cut(s) 199, 284
AlwI GGATC 1 cut(s) 127
AoxI GGCC 3 cut(s) 82, 135, 275
ApaI GGGCCC 1 cut(s) 279
ApeKI GCWGC 2 cut(s) 57, 60
AspS9I GGNCC 5 cut(s) 36, 111, 212, 275, 276
AsuHPI GGTGA 2 cut(s) 202, 253
AvaII GGWCC 3 cut(s) 36, 111, 212
BaeGI GKGCMC 1 cut(s) 279
BanII GRGCYC 2 cut(s) 17, 279
BauI CACGAG 1 cut(s) 106
BbvI GCAGC 2 cut(s) 69, 72
BccI CCATC 2 cut(s) 240, 305
BfmI CTRYAG 1 cut(s) 330
BglI GCCNNNNNGGC 1 cut(s) 134
BisI GCNGC 3 cut(s) 58, 61, 82
BlsI GCNGC 3 cut(s) 59, 62, 83
Bme18I GGWCC 3 cut(s) 36, 111, 212
BmgT120I GGNCC 5 cut(s) 36, 111, 212, 275, 276
BmiI GGNNCC 3 cut(s) 38, 213, 277
BmrI ACTGGG 1 cut(s) 218
BmuI ACTGGG 1 cut(s) 218
BsaJI CCNNGG 3 cut(s) 85, 114, 264
Bse118I RCCGGY 1 cut(s) 128
Bse1I ACTGG 1 cut(s) 213
BseDI CCNNGG 3 cut(s) 85, 114, 264
BseGI GGATG 1 cut(s) 251
BseNI ACTGG 1 cut(s) 213
BseRI GAGGAG 1 cut(s) 66
BseSI GKGCMC 1 cut(s) 279
BseXI GCAGC 2 cut(s) 69, 72
BshFI GGCC 3 cut(s) 84, 137, 277
BsiSI CCGG 1 cut(s) 129
BslFI GGGAC 1 cut(s) 22
BsmFI GGGAC 1 cut(s) 22
BsnI GGCC 3 cut(s) 84, 137, 277
Bsp120I GGGCCC 1 cut(s) 275
Bsp1286I GDGCHC 2 cut(s) 17, 279
Bsp143I GATC 1 cut(s) 119
BspACI CCGC 1 cut(s) 81
BspANI GGCC 3 cut(s) 84, 137, 277
BspLI GGNNCC 3 cut(s) 38, 213, 277
BspPI GGATC 1 cut(s) 127
BsrFI RCCGGY 1 cut(s) 128
BsrI ACTGG 1 cut(s) 213
BssAI RCCGGY 1 cut(s) 128
BssECI CCNNGG 3 cut(s) 85, 114, 264
BssMI GATC 1 cut(s) 119
BssSI CACGAG 1 cut(s) 106
BssT1I CCWWGG 2 cut(s) 85, 264
Bst2BI CACGAG 1 cut(s) 106
Bst4CI ACNGT 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 130
BstF5I GGATG 1 cut(s) 251
BstKTI GATC 1 cut(s) 122
BstMBI GATC 1 cut(s) 119
BstMWI GCNNNNNNNGC 4 cut(s) 81, 134, 159, 290
BstSFI CTRYAG 1 cut(s) 330
BstSLI GKGCMC 1 cut(s) 279
BstV1I GCAGC 2 cut(s) 69, 72
BstX2I RGATCY 1 cut(s) 119
BstYI RGATCY 1 cut(s) 119
BsuRI GGCC 3 cut(s) 84, 137, 277
BtsCI GGATG 1 cut(s) 251
Cac8I GCNNGC 1 cut(s) 130
Cfr10I RCCGGY 1 cut(s) 128
Cfr13I GGNCC 5 cut(s) 36, 111, 212, 275, 276
CseI GACGC 1 cut(s) 88
Csp6I GTAC 1 cut(s) 318
CviJI RGCY 9 cut(s) 15, 84, 128, 137, 199, 277, 284, 315, 335
CviKI_1 RGCY 9 cut(s) 15, 84, 128, 137, 199, 277, 284, 315, 335
CviQI GTAC 1 cut(s) 318
DpnI GATC 1 cut(s) 121
DpnII GATC 1 cut(s) 119
EaeI YGGCCR 1 cut(s) 82
Eco130I CCWWGG 2 cut(s) 85, 264
Eco147I AGGCCT 1 cut(s) 137
Eco24I GRGCYC 2 cut(s) 17, 279
Eco47I GGWCC 3 cut(s) 36, 111, 212
Eco57I CTGAAG 1 cut(s) 144
EcoO109I RGGNCCY 2 cut(s) 36, 275
EcoT14I CCWWGG 2 cut(s) 85, 264
EcoT38I GRGCYC 2 cut(s) 17, 279
ErhI CCWWGG 2 cut(s) 85, 264
FaiI YATR 2 cut(s) 173, 226
FalI AAGNNNNNCTT 4 cut(s) 125, 157, 148, 180
FaqI GGGAC 1 cut(s) 22
Fnu4HI GCNGC 3 cut(s) 58, 61, 82
FokI GGATG 1 cut(s) 258
FriOI GRGCYC 2 cut(s) 17, 279
Fsp4HI GCNGC 3 cut(s) 58, 61, 82
GluI GCNGC 3 cut(s) 58, 61, 82
HaeIII GGCC 3 cut(s) 84, 137, 277
HapII CCGG 1 cut(s) 129
HgaI GACGC 1 cut(s) 88
HpaII CCGG 1 cut(s) 129
HphI GGTGA 2 cut(s) 202, 253
Hpy188I TCNGA 1 cut(s) 124
Hpy188III TCNNGA 2 cut(s) 10, 106
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 4 cut(s) 148, 176, 187, 266
HpyCH4III ACNGT 1 cut(s) 190
HpyCH4V TGCA 2 cut(s) 75, 162
HpyF10VI GCNNNNNNNGC 4 cut(s) 81, 134, 159, 290
KroI GCCGGC 1 cut(s) 128
KroNI GCCGGC 1 cut(s) 130
Kzo9I GATC 1 cut(s) 119
LmnI GCTCC 1 cut(s) 196
LpnPI CCDG 5 cut(s) 23, 142, 185, 194, 334
Lsp1109I GCAGC 2 cut(s) 69, 72
MaeIII GTNAC 2 cut(s) 259, 325
MalI GATC 1 cut(s) 121
MboI GATC 1 cut(s) 119
MboII GAAGA 1 cut(s) 133
MflI RGATCY 1 cut(s) 119
MhlI GDGCHC 2 cut(s) 17, 279
MmeI TCCRAC 1 cut(s) 28
MnlI CCTC 7 cut(s) 27, 44, 47, 50, 102, 109, 235
MroNI GCCGGC 1 cut(s) 128
MspI CCGG 1 cut(s) 129
MwoI GCNNNNNNNGC 4 cut(s) 81, 134, 159, 290
NaeI GCCGGC 1 cut(s) 130
NdeII GATC 1 cut(s) 119
NgoMIV GCCGGC 1 cut(s) 128
NlaIV GGNNCC 3 cut(s) 38, 213, 277
NmuCI GTSAC 1 cut(s) 259
PceI AGGCCT 1 cut(s) 137
PcsI WCGNNNNNNNCGW 1 cut(s) 27
PdiI GCCGGC 1 cut(s) 130
PkrI GCNGC 3 cut(s) 59, 62, 83
PpuMI RGGWCCY 1 cut(s) 36
Psp5II RGGWCCY 1 cut(s) 36
PspN4I GGNNCC 3 cut(s) 38, 213, 277
PspOMI GGGCCC 1 cut(s) 275
PspPI GGNCC 5 cut(s) 36, 111, 212, 275, 276
PspPPI RGGWCCY 1 cut(s) 36
PsuI RGATCY 1 cut(s) 119
RsaI GTAC 1 cut(s) 319
RsaNI GTAC 1 cut(s) 318
SatI GCNGC 3 cut(s) 58, 61, 82
Sau3AI GATC 1 cut(s) 119
Sau96I GGNCC 5 cut(s) 36, 111, 212, 275, 276
SduI GDGCHC 2 cut(s) 17, 279
SetI ASST 5 cut(s) 38, 201, 270, 286, 323
SfcI CTRYAG 1 cut(s) 330
SinI GGWCC 3 cut(s) 36, 111, 212
SseBI AGGCCT 1 cut(s) 137
SsiI CCGC 1 cut(s) 81
StuI AGGCCT 1 cut(s) 137
StyI CCWWGG 2 cut(s) 85, 264
TaaI ACNGT 1 cut(s) 190
TaqI TCGA 2 cut(s) 21, 300
TaqII GACCGA 1 cut(s) 128
TauI GCSGC 1 cut(s) 84
TseFI GTSAC 1 cut(s) 259
TseI GCWGC 2 cut(s) 57, 60
Tsp45I GTSAC 1 cut(s) 259
TspDTI ATGAA 1 cut(s) 286
TspGWI ACGGA 2 cut(s) 19, 192
VpaK11BI GGWCC 3 cut(s) 36, 111, 212
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.