Rroxscaffold_3G00227780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0018113
Physical Location & Seq
Reverse (-)
12049196 .. 12049759
564 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00227780.1

Sequence Viewer

Length: 300 bp
ATGGAAATCCAGAGCCCCGTCGAGCAATCCGTGAGGTTGCTCATTCTCGATCTCAGCGTTCATCGTCCCTCGCTGTTGGAGGAGGCAGCAGCAAGGCGTTTTGCAAGTGCGGCCAAGGGTGGAAGTGCGTCATCACGAGGACCGAGGGATCTGAAGCCGGCAAGGCCTTCTTCAAATGTGGCGAAAGTTGCACTTGTGTCATGTATTACTCCTTCCAATTCAGATGAAATTAGGGTTGATTTGATTACAAAATATGTCGATGGCCCCCCCCCACACACACACACGTACACACACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

99

Amino Acids

10.7

Weight (kDa)

9.36

Isoelectric Point (pI)

59.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018113)

Species Orthologous Gene IDs
malus_domestica MD12G1166300.v1.1
prunus_persica Prupe.5G034700_v2.0.a1
pyrus_communis pycom12g15840
rosa_chinensis RchiOBHm_Chr7g0232991
rosa_laevigata RLG00000001307 RLG00000017952
rosa_roxburghii Rroxscaffold_2G00131780 Rroxscaffold_3G00227780
rosa_rugosa Rorug01G0313000 Rorug07G0277200
rosa_wichuraiana Rw0G019180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 110
AclWI GGATC 1 cut(s) 156
AcoI YGGCCR 1 cut(s) 111
AcuI CTGAAG 1 cut(s) 173
AfaI GTAC 1 cut(s) 287
AflIII ACRYGT 1 cut(s) 282
AgsI TTSAA 1 cut(s) 174
AlwI GGATC 1 cut(s) 156
AoxI GGCC 3 cut(s) 111, 164, 262
ApeKI GCWGC 2 cut(s) 86, 89
AspS9I GGNCC 2 cut(s) 140, 263
AvaII GGWCC 1 cut(s) 140
BanII GRGCYC 1 cut(s) 17
BarI GAAGNNNNNNTAC 2 cut(s) 196, 228
BauI CACGAG 1 cut(s) 135
BbvI GCAGC 2 cut(s) 98, 101
BccI CCATC 1 cut(s) 254
BglI GCCNNNNNGGC 1 cut(s) 163
BisI GCNGC 3 cut(s) 87, 90, 111
BlsI GCNGC 3 cut(s) 88, 91, 112
Bme18I GGWCC 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 140, 263
BmiI GGNNCC 1 cut(s) 265
BsaAI YACGTR 1 cut(s) 285
BsaJI CCNNGG 2 cut(s) 114, 143
Bse118I RCCGGY 1 cut(s) 157
BseDI CCNNGG 2 cut(s) 114, 143
BseMII CTCAG 1 cut(s) 67
BseRI GAGGAG 1 cut(s) 95
BseXI GCAGC 2 cut(s) 98, 101
BshFI GGCC 3 cut(s) 113, 166, 264
BsiSI CCGG 1 cut(s) 158
BslFI GGGAC 1 cut(s) 51
BsmFI GGGAC 1 cut(s) 51
BsnI GGCC 3 cut(s) 113, 166, 264
Bsp1286I GDGCHC 1 cut(s) 17
Bsp143I GATC 2 cut(s) 49, 148
BspACI CCGC 1 cut(s) 110
BspANI GGCC 3 cut(s) 113, 166, 264
BspCNI CTCAG 1 cut(s) 66
BspLI GGNNCC 1 cut(s) 265
BspPI GGATC 1 cut(s) 156
BsrFI RCCGGY 1 cut(s) 157
BssAI RCCGGY 1 cut(s) 157
BssECI CCNNGG 2 cut(s) 114, 143
BssMI GATC 2 cut(s) 49, 148
BssSI CACGAG 1 cut(s) 135
BssT1I CCWWGG 1 cut(s) 114
Bst2BI CACGAG 1 cut(s) 135
BstBAI YACGTR 1 cut(s) 285
BstC8I GCNNGC 1 cut(s) 159
BstDEI CTNAG 1 cut(s) 53
BstKTI GATC 2 cut(s) 52, 151
BstMBI GATC 2 cut(s) 49, 148
BstMWI GCNNNNNNNGC 3 cut(s) 110, 163, 188
BstV1I GCAGC 2 cut(s) 98, 101
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BsuRI GGCC 3 cut(s) 113, 166, 264
Cac8I GCNNGC 1 cut(s) 159
Cfr10I RCCGGY 1 cut(s) 157
Cfr13I GGNCC 2 cut(s) 140, 263
CseI GACGC 1 cut(s) 117
Csp6I GTAC 1 cut(s) 286
CviAII CATG 1 cut(s) 201
CviJI RGCY 5 cut(s) 15, 113, 157, 166, 264
CviKI_1 RGCY 5 cut(s) 15, 113, 157, 166, 264
CviQI GTAC 1 cut(s) 286
DdeI CTNAG 1 cut(s) 53
DpnI GATC 2 cut(s) 51, 150
DpnII GATC 2 cut(s) 49, 148
EaeI YGGCCR 1 cut(s) 111
Eco130I CCWWGG 1 cut(s) 114
Eco147I AGGCCT 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 173
EcoT14I CCWWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 17
ErhI CCWWGG 1 cut(s) 114
FaeI CATG 1 cut(s) 204
FaiI YATR 2 cut(s) 202, 255
FalI AAGNNNNNCTT 4 cut(s) 154, 186, 177, 209
FaqI GGGAC 1 cut(s) 51
FatI CATG 1 cut(s) 200
Fnu4HI GCNGC 3 cut(s) 87, 90, 111
FriOI GRGCYC 1 cut(s) 17
Fsp4HI GCNGC 3 cut(s) 87, 90, 111
GluI GCNGC 3 cut(s) 87, 90, 111
HaeIII GGCC 3 cut(s) 113, 166, 264
HapII CCGG 1 cut(s) 158
HgaI GACGC 1 cut(s) 117
Hin1II CATG 1 cut(s) 204
HpaII CCGG 1 cut(s) 158
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 2 cut(s) 153, 223
Hpy188III TCNNGA 3 cut(s) 10, 47, 135
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 1 cut(s) 23
HpyAV CCTTC 2 cut(s) 177, 222
HpyCH4IV ACGT 1 cut(s) 284
HpyCH4V TGCA 2 cut(s) 104, 191
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 163, 188
HpyF3I CTNAG 1 cut(s) 53
HpySE526I ACGT 1 cut(s) 284
Hsp92II CATG 1 cut(s) 204
KroI GCCGGC 1 cut(s) 157
KroNI GCCGGC 1 cut(s) 159
Kzo9I GATC 2 cut(s) 49, 148
LpnPI CCDG 2 cut(s) 23, 171
Lsp1109I GCAGC 2 cut(s) 98, 101
MaeII ACGT 1 cut(s) 284
MalI GATC 2 cut(s) 51, 150
MboI GATC 2 cut(s) 49, 148
MboII GAAGA 1 cut(s) 162
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 17
MluCI AATT 2 cut(s) 217, 228
MmeI TCCRAC 1 cut(s) 57
MnlI CCTC 6 cut(s) 27, 73, 76, 79, 131, 138
MroNI GCCGGC 1 cut(s) 157
MslI CAYNNNNRTG 1 cut(s) 295
MspI CCGG 1 cut(s) 158
MwoI GCNNNNNNNGC 3 cut(s) 110, 163, 188
NaeI GCCGGC 1 cut(s) 159
NdeII GATC 2 cut(s) 49, 148
NgoMIV GCCGGC 1 cut(s) 157
NlaIII CATG 1 cut(s) 204
NlaIV GGNNCC 1 cut(s) 265
PceI AGGCCT 1 cut(s) 166
PcsI WCGNNNNNNNCGW 2 cut(s) 27, 54
PdiI GCCGGC 1 cut(s) 159
PkrI GCNGC 3 cut(s) 88, 91, 112
Ppu21I YACGTR 1 cut(s) 285
PspN4I GGNNCC 1 cut(s) 265
PspPI GGNCC 2 cut(s) 140, 263
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 1 cut(s) 287
RsaNI GTAC 1 cut(s) 286
RseI CAYNNNNRTG 1 cut(s) 295
SatI GCNGC 3 cut(s) 87, 90, 111
Sau3AI GATC 2 cut(s) 49, 148
Sau96I GGNCC 2 cut(s) 140, 263
SduI GDGCHC 1 cut(s) 17
SetI ASST 2 cut(s) 38, 287
SinI GGWCC 1 cut(s) 140
SmiMI CAYNNNNRTG 1 cut(s) 295
Sse9I AATT 2 cut(s) 217, 228
SseBI AGGCCT 1 cut(s) 166
SsiI CCGC 1 cut(s) 110
StuI AGGCCT 1 cut(s) 166
StyI CCWWGG 1 cut(s) 114
TaiI ACGT 1 cut(s) 287
TaqI TCGA 3 cut(s) 21, 48, 258
TaqII GACCGA 1 cut(s) 157
TasI AATT 2 cut(s) 217, 228
TauI GCSGC 1 cut(s) 113
TseI GCWGC 2 cut(s) 86, 89
TspDTI ATGAA 2 cut(s) 50, 240
TspGWI ACGGA 1 cut(s) 19
VpaK11BI GGWCC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.