RLG00000017952

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0018113
Physical Location & Seq
Reverse (-)
23527503 .. 23530136
2634 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000017952

Sequence Viewer

Length: 801 bp
ATGTTCATTGAGTATGATAATAGTAGAGTTAGAGTTACTCCAGGTTTTCTAATGGAGCATGGAGTGTTAAAAAGTCTTTATGTCCAAAGCGAGCATCATATAGAGTCATTCTCCTATCACCTTAAGTATGCTATAACTCATTATCTTAAGCAGTGGGGAAGTATAGGATTAGGGTATAGTACTATCCGATTAGAAATCATTAGCATTCCTTCATATCCCCGTAGAACTAGTCTATATCATGATAAAGCCAGACACCTAGTCATCATATCACTTCGTAATTATATAGAGCCACCTCCTTTACCAACAATTGATGTGGCACCAACAGTGGAGGATATTCACAAATTTCGTGCAGCCCAGCTTGTAGTAGATGATTTCTTTGATGATACAAATCTGCAATTAATCTACCAAGCCAATGCTTTAAATATCTACACTAGAGAACACCTGGATGGAGTACCACGACCAGGAGAGCTGTACACTGTTGATATGAGCACAACCACTAAAGAATGGGAGGGAACTCTGGCACTAGCAAGGCATTTTGCAAGTGTGGCGAAGGGTGGAAATGTGTCATCACAAGGACTGAAGGACCTGATTCCGGCAAGGCCTTCTTCAAATGTGGTGAAAGTTGCACCTGTGTCATATGGAGATGGTACAGTGAAGGAGCTAGAGAAAATTGGTCCAAACGAAGCATACTGCGAGTGTGGTGAAGGTTGGACTTGTGTCATCTCCAAAGTTGAAGGTTCTGAACCTGACAAGGCCTTCTTCGAATGTGCTGATGGTTGCTCTTGTCTCACTAATGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

267

Amino Acids

29.73

Weight (kDa)

5.68

Isoelectric Point (pI)

43.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018113)

Species Orthologous Gene IDs
malus_domestica MD12G1166300.v1.1
prunus_persica Prupe.5G034700_v2.0.a1
pyrus_communis pycom12g15840
rosa_chinensis RchiOBHm_Chr7g0232991
rosa_laevigata RLG00000001307 RLG00000017952
rosa_roxburghii Rroxscaffold_2G00131780 Rroxscaffold_3G00227780
rosa_rugosa Rorug01G0313000 Rorug07G0277200
rosa_wichuraiana Rw0G019180

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 316
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 1 cut(s) 599
AfaI GTAC 4 cut(s) 181, 453, 473, 649
AfiI CCNNNNNNNGG 2 cut(s) 461, 592
AflII CTTAAG 2 cut(s) 122, 146
AgsI TTSAA 2 cut(s) 609, 734
AhdI GACNNNNNGTC 1 cut(s) 257
AhlI ACTAGT 1 cut(s) 227
AjnI CCWGG 3 cut(s) 40, 441, 460
AluBI AGCT 3 cut(s) 358, 469, 661
AluI AGCT 3 cut(s) 358, 469, 661
Alw21I GWGCWC 1 cut(s) 491
Alw26I GTCTC 1 cut(s) 791
AoxI GGCC 2 cut(s) 599, 753
ApeKI GCWGC 1 cut(s) 350
ApoI RAATTY 1 cut(s) 341
AseI ATTAAT 1 cut(s) 398
AspS9I GGNCC 2 cut(s) 583, 674
AsuHPI GGTGA 3 cut(s) 110, 628, 713
AsuII TTCGAA 1 cut(s) 762
AvaII GGWCC 2 cut(s) 583, 674
BanI GGYRCC 1 cut(s) 316
Bbv12I GWGCWC 1 cut(s) 491
BbvI GCAGC 1 cut(s) 362
BccI CCATC 3 cut(s) 440, 638, 767
BciT130I CCWGG 3 cut(s) 42, 443, 462
BcoDI GTCTC 1 cut(s) 791
BcuI ACTAGT 1 cut(s) 227
BfaI CTAG 5 cut(s) 228, 257, 432, 524, 662
BfrI CTTAAG 2 cut(s) 122, 146
BisI GCNGC 1 cut(s) 351
BlsI GCNGC 1 cut(s) 352
BmcAI AGTACT 1 cut(s) 181
Bme1390I CCNGG 3 cut(s) 42, 443, 462
Bme18I GGWCC 2 cut(s) 583, 674
BmeRI GACNNNNNGTC 1 cut(s) 257
BmgT120I GGNCC 2 cut(s) 583, 674
BmiI GGNNCC 1 cut(s) 318
BmrFI CCNGG 3 cut(s) 42, 443, 462
BmsI GCATC 1 cut(s) 103
BoxI GACNNNNGTC 1 cut(s) 716
BplI GAGNNNNNCTC 2 cut(s) 95, 127
BpmI CTGGAG 1 cut(s) 24
Bpu14I TTCGAA 1 cut(s) 762
BsaBI GATNNNNATC 1 cut(s) 387
Bsc4I CCNNNNNNNGG 2 cut(s) 461, 592
Bse8I GATNNNNATC 1 cut(s) 387
BseBI CCWGG 3 cut(s) 42, 443, 462
BseGI GGATG 1 cut(s) 451
BseJI GATNNNNATC 1 cut(s) 387
BseLI CCNNNNNNNGG 2 cut(s) 461, 592
BseXI GCAGC 1 cut(s) 362
BseYI CCCAGC 1 cut(s) 354
BsgI GTGCAG 1 cut(s) 369
BshFI GGCC 2 cut(s) 601, 755
BshNI GGYRCC 1 cut(s) 316
BsiHKAI GWGCWC 1 cut(s) 491
BsiSI CCGG 1 cut(s) 593
BslI CCNNNNNNNGG 2 cut(s) 461, 592
BsmAI GTCTC 1 cut(s) 791
BsmI GAATGC 1 cut(s) 204
BsnI GGCC 2 cut(s) 601, 755
Bsp119I TTCGAA 1 cut(s) 762
Bsp1286I GDGCHC 1 cut(s) 491
Bsp1407I TGTACA 1 cut(s) 471
BspANI GGCC 2 cut(s) 601, 755
BspHI TCATGA 1 cut(s) 238
BspLI GGNNCC 1 cut(s) 318
BspT104I TTCGAA 1 cut(s) 762
BspT107I GGYRCC 1 cut(s) 316
BspTI CTTAAG 2 cut(s) 122, 146
BsrGI TGTACA 1 cut(s) 471
Bst2UI CCWGG 3 cut(s) 42, 443, 462
Bst4CI ACNGT 3 cut(s) 325, 478, 652
BstAFI CTTAAG 2 cut(s) 122, 146
BstAUI TGTACA 1 cut(s) 471
BstBI TTCGAA 1 cut(s) 762
BstC8I GCNNGC 1 cut(s) 92
BstF5I GGATG 1 cut(s) 451
BstMAI GTCTC 1 cut(s) 791
BstMWI GCNNNNNNNGC 1 cut(s) 545
BstNI CCWGG 3 cut(s) 42, 443, 462
BstPAI GACNNNNGTC 1 cut(s) 716
BstSCI CCNGG 3 cut(s) 40, 441, 460
BstV1I GCAGC 1 cut(s) 362
BsuRI GGCC 2 cut(s) 601, 755
BtsCI GGATG 1 cut(s) 451
BtsI GCAGTG 1 cut(s) 158
BtsIMutI CAGTG 4 cut(s) 158, 330, 474, 657
Cac8I GCNNGC 1 cut(s) 92
CciI TCATGA 1 cut(s) 238
Cfr13I GGNCC 2 cut(s) 583, 674
Csp6I GTAC 4 cut(s) 180, 452, 472, 648
CspCI CAANNNNNGTGG 2 cut(s) 294, 329
CviAII CATG 2 cut(s) 59, 239
CviJI RGCY 9 cut(s) 248, 289, 353, 358, 410, 469, 601, 661, 755
CviKI_1 RGCY 9 cut(s) 248, 289, 353, 358, 410, 469, 601, 661, 755
CviQI GTAC 4 cut(s) 180, 452, 472, 648
DraI TTTAAA 1 cut(s) 420
DriI GACNNNNNGTC 1 cut(s) 257
Eam1105I GACNNNNNGTC 1 cut(s) 257
Eco147I AGGCCT 2 cut(s) 601, 755
Eco47I GGWCC 2 cut(s) 583, 674
Eco57I CTGAAG 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 583
EcoRII CCWGG 3 cut(s) 40, 441, 460
FaeI CATG 2 cut(s) 62, 242
FalI AAGNNNNNCTT 4 cut(s) 589, 621, 743, 775
FatI CATG 2 cut(s) 58, 238
FauNDI CATATG 1 cut(s) 637
Fnu4HI GCNGC 1 cut(s) 351
FokI GGATG 1 cut(s) 458
Fsp4HI GCNGC 1 cut(s) 351
FspBI CTAG 5 cut(s) 228, 257, 432, 524, 662
GluI GCNGC 1 cut(s) 351
GsaI CCCAGC 1 cut(s) 358
GsuI CTGGAG 1 cut(s) 24
HaeIII GGCC 2 cut(s) 601, 755
HapII CCGG 1 cut(s) 593
Hin1II CATG 2 cut(s) 62, 242
HinfI GANTC 2 cut(s) 104, 589
HpaII CCGG 1 cut(s) 593
HphI GGTGA 3 cut(s) 110, 628, 713
Hpy166II GTNNAC 1 cut(s) 474
Hpy188I TCNGA 2 cut(s) 188, 742
Hpy188III TCNNGA 1 cut(s) 239
Hpy8I GTNNAC 1 cut(s) 474
HpyAV CCTTC 8 cut(s) 219, 544, 574, 612, 649, 698, 728, 766
HpyCH4III ACNGT 3 cut(s) 325, 478, 652
HpyCH4V TGCA 4 cut(s) 350, 394, 539, 626
HpyF10VI GCNNNNNNNGC 1 cut(s) 545
Hsp92II CATG 2 cut(s) 62, 242
LmnI GCTCC 2 cut(s) 55, 658
Lsp1109I GCAGC 1 cut(s) 362
LweI GCATC 1 cut(s) 103
MaeI CTAG 5 cut(s) 228, 257, 432, 524, 662
MaeIII GTNAC 1 cut(s) 34
MboII GAAGA 2 cut(s) 597, 751
MfeI CAATTG 1 cut(s) 306
MhlI GDGCHC 1 cut(s) 491
MluCI AATT 5 cut(s) 277, 306, 341, 395, 669
MlyI GAGTC 1 cut(s) 113
MmeI TCCRAC 1 cut(s) 689
MnlI CCTC 3 cut(s) 303, 322, 502
MseI TTAA 5 cut(s) 68, 123, 147, 398, 419
MslI CAYNNNNRTG 1 cut(s) 444
MspCI CTTAAG 2 cut(s) 122, 146
MspI CCGG 1 cut(s) 593
MspR9I CCNGG 3 cut(s) 42, 443, 462
MunI CAATTG 1 cut(s) 306
Mva1269I GAATGC 1 cut(s) 204
MvaI CCWGG 3 cut(s) 42, 443, 462
MwoI GCNNNNNNNGC 1 cut(s) 545
NdeI CATATG 1 cut(s) 637
NlaIII CATG 2 cut(s) 62, 242
NlaIV GGNNCC 1 cut(s) 318
NspV TTCGAA 1 cut(s) 762
PagI TCATGA 1 cut(s) 238
PceI AGGCCT 2 cut(s) 601, 755
PctI GAATGC 1 cut(s) 204
PfeI GAWTC 1 cut(s) 589
PkrI GCNGC 1 cut(s) 352
PleI GAGTC 1 cut(s) 112
PpsI GAGTC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 583
PshAI GACNNNNGTC 1 cut(s) 716
PshBI ATTAAT 1 cut(s) 398
Psp5II RGGWCCY 1 cut(s) 583
Psp6I CCWGG 3 cut(s) 40, 441, 460
PspFI CCCAGC 1 cut(s) 354
PspGI CCWGG 3 cut(s) 40, 441, 460
PspN4I GGNNCC 1 cut(s) 318
PspPI GGNCC 2 cut(s) 583, 674
PspPPI RGGWCCY 1 cut(s) 583
RsaI GTAC 4 cut(s) 181, 453, 473, 649
RsaNI GTAC 4 cut(s) 180, 452, 472, 648
RseI CAYNNNNRTG 1 cut(s) 444
SaqAI TTAA 5 cut(s) 68, 123, 147, 398, 419
SatI GCNGC 1 cut(s) 351
Sau96I GGNCC 2 cut(s) 583, 674
ScaI AGTACT 1 cut(s) 181
SchI GAGTC 1 cut(s) 113
ScrFI CCNGG 3 cut(s) 42, 443, 462
SduI GDGCHC 1 cut(s) 491
SfaNI GCATC 1 cut(s) 103
SfuI TTCGAA 1 cut(s) 762
SinI GGWCC 2 cut(s) 583, 674
SmiMI CAYNNNNRTG 1 cut(s) 444
SmlI CTYRAG 2 cut(s) 122, 146
SmoI CTYRAG 2 cut(s) 122, 146
SpeI ACTAGT 1 cut(s) 227
Sse9I AATT 5 cut(s) 277, 306, 341, 395, 669
SseBI AGGCCT 2 cut(s) 601, 755
SspMI CTAG 5 cut(s) 228, 257, 432, 524, 662
StuI AGGCCT 2 cut(s) 601, 755
StyD4I CCNGG 3 cut(s) 40, 441, 460
TaaI ACNGT 3 cut(s) 325, 478, 652
TaqI TCGA 1 cut(s) 762
TasI AATT 5 cut(s) 277, 306, 341, 395, 669
TatI WGTACW 2 cut(s) 179, 471
TfiI GAWTC 1 cut(s) 589
Tru1I TTAA 5 cut(s) 68, 123, 147, 398, 419
Tru9I TTAA 5 cut(s) 68, 123, 147, 398, 419
TscAI CASTG 4 cut(s) 158, 330, 481, 657
TseI GCWGC 1 cut(s) 350
TspDTI ATGAA 1 cut(s) 201
TspRI CASTG 4 cut(s) 158, 330, 481, 657
Vha464I CTTAAG 2 cut(s) 122, 146
VpaK11BI GGWCC 2 cut(s) 583, 674
VspI ATTAAT 1 cut(s) 398
XapI RAATTY 1 cut(s) 341
XspI CTAG 5 cut(s) 228, 257, 432, 524, 662
ZrmI AGTACT 1 cut(s) 181
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.