Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0018113

Physical Location & Seq

Genomic Coordinates Forward (+)

43118827 .. 43120245

Gene Structure 1419 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0313000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGGGATCTGAGGCAGAGCCAGAGTCACCAAAGCTACCCTTGTTCTCCATTTCACACATACAGTCAAATGAGCCTTCTGGGTGTCTAACCCCACCCTTCTACAGTTCAGTTTCAGTACCATTCAGATGGGAAGAAGAGCCAGGAAAGCCAAGGCCTTGCACAGACCTTGCAACCATACCAAACCCAGTTGACTTATCCCCAAAGTGCTTGGAACTCCCTCCAAGGCTGTTGCTTGAGACCAAATTGCTCTCACCCACCACAGTGTTGGAGGGTCCTTATGTGGGGAGATCAAGGTTTCAGTCCTCTTCTTTTAGGATGGTGGGGAGGGACTGTTATGGGTCTTTTAGCGCTGATCATGAGAGATCAGGGCAGCATGGTGCTTTGGTTATGAGCAAGAGTGGGGTTAAGGAAAGAAGGTGGTTTGATTCATGGGGGAGGAGGGTCTTTAAGGGTAAAAGAGAGGTTGGTGGGGCTAATTATGTCTTTCCATCATCTGTGGATGGAGAGAGTGATGGTGGTGGTGGTGGTGGTGGCGGTGGCGGTGGCGGTGTTGGAAAGAGTAGTAGCTTCAGGGTGAAGAACACAAGGCATAGAAGGGCCAGGAGCTTTTCCAGTCTCTCTCATTCAAGGCCTCAGTTCTGGGCAACTATCAAACAAGGGTTGAAGCAGGTGGTTCCATGGAAGAGTAGGAAATCAAAACAAGATGGGATTGTCATTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000041 GO:0003674 GO:0003824 GO:0005215 GO:0005384 GO:0005388 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006828 GO:0007275 GO:0008150 GO:0008324 GO:0012505 GO:0015075 GO:0015085 GO:0015318 GO:0015399 GO:0015405 GO:0015410 GO:0015662 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019829 GO:0022622 GO:0022804 GO:0022853 GO:0022857 GO:0022890 GO:0030001 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0034220 GO:0042592 GO:0042623 GO:0042625 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0046873 GO:0046915 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055071 GO:0055076 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0070588 GO:0070838 GO:0071421 GO:0072511 GO:0090662 GO:0097708 GO:0098655 GO:0098660 GO:0098662 GO:0098771 GO:0098791 GO:0099131 GO:0099132 GO:0099402

KEGG Pathways

Metabolic & Signaling

ko04020 ko04022 ko04972 ko05010 map04020 map04022 map04972 map05010

Pfam Domains

Protein Families

Cation_ATPase Cation_ATPase_C Cation_ATPase_N E1-E2_ATPase Hydrolase Hydrolase_3

Protein Analysis

239

Amino Acids

26.08

Weight (kDa)

9.89

Isoelectric Point (pI)

73.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018113)

Species	Orthologous Gene IDs
malus_domestica	MD12G1166300.v1.1
prunus_persica	Prupe.5G034700_v2.0.a1
pyrus_communis	pycom12g15840
rosa_chinensis	RchiOBHm_Chr7g0232991
rosa_laevigata	RLG00000001307 RLG00000017952
rosa_roxburghii	Rroxscaffold_2G00131780 Rroxscaffold_3G00227780
rosa_rugosa	Rorug01G0313000 Rorug07G0277200
rosa_wichuraiana	Rw0G019180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	658
Acc36I	ACCTGC	1 cut(s)	658
AciI	CCGC	3 cut(s)	534, 540, 546
AclWI	GGATC	1 cut(s)	13
AcuI	CTGAAG	1 cut(s)	553
AfaI	GTAC	1 cut(s)	117
AfeI	AGCGCT	1 cut(s)	349
AfiI	CCNNNNNNNGG	1 cut(s)	281
AgsI	TTSAA	2 cut(s)	627, 664
AjnI	CCWGG	2 cut(s)	139, 599
AleI	CACNNNNGTG	1 cut(s)	260
AluBI	AGCT	3 cut(s)	34, 567, 606
AluI	AGCT	3 cut(s)	34, 567, 606
Alw26I	GTCTC	2 cut(s)	230, 620
AlwI	GGATC	1 cut(s)	13
Aor51HI	AGCGCT	1 cut(s)	349
AoxI	GGCC	3 cut(s)	152, 597, 629
ApeKI	GCWGC	1 cut(s)	370
AspLEI	GCGC	1 cut(s)	350
AspS9I	GGNCC	2 cut(s)	272, 597
AsuHPI	GGTGA	3 cut(s)	18, 243, 586
AvaII	GGWCC	1 cut(s)	272
BbvI	GCAGC	1 cut(s)	382
BccI	CCATC	6 cut(s)	120, 310, 494, 496, 506, 698
BciT130I	CCWGG	2 cut(s)	141, 601
BclI	TGATCA	1 cut(s)	352
BcoDI	GTCTC	2 cut(s)	230, 620
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	351
BfuAI	ACCTGC	1 cut(s)	658
BisI	GCNGC	1 cut(s)	371
BlsI	GCNGC	1 cut(s)	372
Bme1390I	CCNGG	2 cut(s)	141, 601
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	272, 597
BmiI	GGNNCC	2 cut(s)	273, 675
BmrFI	CCNGG	2 cut(s)	141, 601
BmrI	ACTGGG	1 cut(s)	179
BmuI	ACTGGG	1 cut(s)	179
BpuEI	CTTGAG	1 cut(s)	254
BsaI	GGTCTC	1 cut(s)	230
BsaJI	CCNNGG	3 cut(s)	149, 221, 677
BsaXI	ACNNNNNCTCC	2 cut(s)	316, 346
Bsc4I	CCNNNNNNNGG	1 cut(s)	281
Bse1I	ACTGG	2 cut(s)	185, 612
BseBI	CCWGG	2 cut(s)	141, 601
BseDI	CCNNGG	3 cut(s)	149, 221, 677
BseGI	GGATG	2 cut(s)	321, 505
BseLI	CCNNNNNNNGG	1 cut(s)	281
BseMII	CTCAG	1 cut(s)	647
BseNI	ACTGG	2 cut(s)	185, 612
BseRI	GAGGAG	1 cut(s)	451
BseXI	GCAGC	1 cut(s)	382
BshFI	GGCC	3 cut(s)	154, 599, 631
BslFI	GGGAC	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	281
BsmAI	GTCTC	2 cut(s)	230, 620
BsmFI	GGGAC	1 cut(s)	341
BsnI	GGCC	3 cut(s)	154, 599, 631
Bso31I	GGTCTC	1 cut(s)	230
Bsp143I	GATC	4 cut(s)	5, 287, 352, 362
Bsp19I	CCATGG	1 cut(s)	677
BspACI	CCGC	3 cut(s)	534, 540, 546
BspANI	GGCC	3 cut(s)	154, 599, 631
BspCNI	CTCAG	1 cut(s)	646
BspHI	TCATGA	1 cut(s)	355
BspLI	GGNNCC	2 cut(s)	273, 675
BspMI	ACCTGC	1 cut(s)	658
BspPI	GGATC	1 cut(s)	13
BspQI	GCTCTTC	1 cut(s)	129
BspTNI	GGTCTC	1 cut(s)	230
BsrI	ACTGG	2 cut(s)	185, 612
BssECI	CCNNGG	3 cut(s)	149, 221, 677
BssMI	GATC	4 cut(s)	5, 287, 352, 362
BssT1I	CCWWGG	3 cut(s)	149, 221, 677
Bst2UI	CCWGG	2 cut(s)	141, 601
Bst4CI	ACNGT	4 cut(s)	63, 104, 262, 332
Bst6I	CTCTTC	3 cut(s)	129, 310, 677
BstDEI	CTNAG	2 cut(s)	9, 633
BstDSI	CCRYGG	1 cut(s)	677
BstF5I	GGATG	2 cut(s)	321, 505
BstH2I	RGCGCY	1 cut(s)	351
BstHHI	GCGC	1 cut(s)	350
BstKTI	GATC	4 cut(s)	8, 290, 355, 365
BstMAI	GTCTC	2 cut(s)	230, 620
BstMBI	GATC	4 cut(s)	5, 287, 352, 362
BstMWI	GCNNNNNNNGC	1 cut(s)	145
BstNI	CCWGG	2 cut(s)	141, 601
BstSCI	CCNGG	2 cut(s)	139, 599
BstSFI	CTRYAG	1 cut(s)	100
BstV1I	GCAGC	1 cut(s)	382
BstX2I	RGATCY	1 cut(s)	5
BstXI	CCANNNNNNTGG	2 cut(s)	126, 265
BstYI	RGATCY	1 cut(s)	5
BsuRI	GGCC	3 cut(s)	154, 599, 631
BtgI	CCRYGG	1 cut(s)	677
BtsCI	GGATG	2 cut(s)	321, 505
BtsIMutI	CAGTG	1 cut(s)	267
BveI	ACCTGC	1 cut(s)	658
CciI	TCATGA	1 cut(s)	355
CfoI	GCGC	1 cut(s)	350
Cfr13I	GGNCC	2 cut(s)	272, 597
Csp6I	GTAC	1 cut(s)	116
CviAII	CATG	4 cut(s)	356, 374, 429, 678
CviQI	GTAC	1 cut(s)	116
DdeI	CTNAG	2 cut(s)	9, 633
DpnI	GATC	4 cut(s)	7, 289, 354, 364
DpnII	GATC	4 cut(s)	5, 287, 352, 362
Eam1104I	CTCTTC	3 cut(s)	129, 310, 677
EarI	CTCTTC	3 cut(s)	129, 310, 677
Eco130I	CCWWGG	3 cut(s)	149, 221, 677
Eco147I	AGGCCT	2 cut(s)	154, 631
Eco31I	GGTCTC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	272
Eco47III	AGCGCT	1 cut(s)	349
Eco57I	CTGAAG	1 cut(s)	553
EcoO109I	RGGNCCY	1 cut(s)	272
EcoRII	CCWGG	2 cut(s)	139, 599
EcoT14I	CCWWGG	3 cut(s)	149, 221, 677
ErhI	CCWWGG	3 cut(s)	149, 221, 677
FaeI	CATG	4 cut(s)	359, 377, 432, 681
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FaqI	GGGAC	1 cut(s)	341
FatI	CATG	4 cut(s)	355, 373, 428, 677
FbaI	TGATCA	1 cut(s)	352
Fnu4HI	GCNGC	1 cut(s)	371
FokI	GGATG	2 cut(s)	328, 512
Fsp4HI	GCNGC	1 cut(s)	371
GlaI	GCGC	1 cut(s)	349
GluI	GCNGC	1 cut(s)	371
HaeII	RGCGCY	1 cut(s)	351
HaeIII	GGCC	3 cut(s)	154, 599, 631
HhaI	GCGC	1 cut(s)	350
Hin1II	CATG	4 cut(s)	359, 377, 432, 681
Hin6I	GCGC	1 cut(s)	348
HinP1I	GCGC	1 cut(s)	348
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	2 cut(s)	23, 425
HphI	GGTGA	3 cut(s)	18, 243, 586
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	2 cut(s)	10, 125
Hpy188III	TCNNGA	1 cut(s)	356
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	4 cut(s)	84, 106, 408, 588
HpyCH4III	ACNGT	4 cut(s)	63, 104, 262, 332
HpyCH4V	TGCA	2 cut(s)	159, 170
HpyF10VI	GCNNNNNNNGC	1 cut(s)	145
HpyF3I	CTNAG	2 cut(s)	9, 633
Hsp92II	CATG	4 cut(s)	359, 377, 432, 681
HspAI	GCGC	1 cut(s)	348
Ksp22I	TGATCA	1 cut(s)	352
Kzo9I	GATC	4 cut(s)	5, 287, 352, 362
LguI	GCTCTTC	1 cut(s)	129
LmnI	GCTCC	1 cut(s)	603
Lsp1109I	GCAGC	1 cut(s)	382
MaeIII	GTNAC	1 cut(s)	24
MalI	GATC	4 cut(s)	7, 289, 354, 364
MboI	GATC	4 cut(s)	5, 287, 352, 362
MboII	GAAGA	5 cut(s)	143, 146, 297, 589, 694
MflI	RGATCY	1 cut(s)	5
MluCI	AATT	2 cut(s)	242, 475
MlyI	GAGTC	1 cut(s)	32
MmeI	TCCRAC	2 cut(s)	246, 532
MnlI	CCTC	9 cut(s)	4, 228, 262, 313, 318, 429, 432, 454, 642
MseI	TTAA	2 cut(s)	405, 447
MslI	CAYNNNNRTG	2 cut(s)	124, 260
MspR9I	CCNGG	2 cut(s)	141, 601
MvaI	CCWGG	2 cut(s)	141, 601
MwoI	GCNNNNNNNGC	1 cut(s)	145
NcoI	CCATGG	1 cut(s)	677
NdeII	GATC	4 cut(s)	5, 287, 352, 362
NlaIII	CATG	4 cut(s)	359, 377, 432, 681
NlaIV	GGNNCC	2 cut(s)	273, 675
NmuCI	GTSAC	1 cut(s)	24
OliI	CACNNNNGTG	1 cut(s)	260
PagI	TCATGA	1 cut(s)	355
PaqCI	CACCTGC	1 cut(s)	658
PceI	AGGCCT	2 cut(s)	154, 631
PciSI	GCTCTTC	1 cut(s)	129
PfeI	GAWTC	1 cut(s)	425
PkrI	GCNGC	1 cut(s)	372
PleI	GAGTC	1 cut(s)	31
PpsI	GAGTC	1 cut(s)	31
PpuMI	RGGWCCY	1 cut(s)	272
Psp5II	RGGWCCY	1 cut(s)	272
Psp6I	CCWGG	2 cut(s)	139, 599
PspGI	CCWGG	2 cut(s)	139, 599
PspN4I	GGNNCC	2 cut(s)	273, 675
PspPI	GGNCC	2 cut(s)	272, 597
PspPPI	RGGWCCY	1 cut(s)	272
PsuI	RGATCY	1 cut(s)	5
RsaI	GTAC	1 cut(s)	117
RsaNI	GTAC	1 cut(s)	116
RseI	CAYNNNNRTG	2 cut(s)	124, 260
SapI	GCTCTTC	1 cut(s)	129
SaqAI	TTAA	2 cut(s)	405, 447
SatI	GCNGC	1 cut(s)	371
Sau3AI	GATC	4 cut(s)	5, 287, 352, 362
Sau96I	GGNCC	2 cut(s)	272, 597
SchI	GAGTC	1 cut(s)	32
ScrFI	CCNGG	2 cut(s)	141, 601
SetI	ASST	8 cut(s)	36, 168, 296, 419, 465, 569, 608, 672
SfcI	CTRYAG	1 cut(s)	100
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	124, 260
SmlI	CTYRAG	1 cut(s)	233
SmoI	CTYRAG	1 cut(s)	233
Sse9I	AATT	2 cut(s)	242, 475
SseBI	AGGCCT	2 cut(s)	154, 631
SsiI	CCGC	3 cut(s)	534, 540, 546
StuI	AGGCCT	2 cut(s)	154, 631
StyD4I	CCNGG	2 cut(s)	139, 599
StyI	CCWWGG	3 cut(s)	149, 221, 677
TaaI	ACNGT	4 cut(s)	63, 104, 262, 332
TasI	AATT	2 cut(s)	242, 475
TfiI	GAWTC	1 cut(s)	425
Tru1I	TTAA	2 cut(s)	405, 447
Tru9I	TTAA	2 cut(s)	405, 447
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	1 cut(s)	24
TseI	GCWGC	1 cut(s)	370
Tsp45I	GTSAC	1 cut(s)	24
TspDTI	ATGAA	1 cut(s)	417
TspRI	CASTG	1 cut(s)	267
VpaK11BI	GGWCC	1 cut(s)	272
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.