RLG00000002676

Protein of unknown function (DUF1218)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009203
Physical Location & Seq
Reverse (-)
37952429 .. 37953584
1156 bp
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UTR
Exon/CDS
Intron
RLM00000002676

Sequence Viewer

Length: 384 bp
ATGGAGAAACTCCAATACGGCTTGGTGCTAACTGTGTCTGTAGTCGCCTCCCTCGGCGTTGTCTCCTTCGTTTCATGCATAGCCGCCGAGTTTAAGAGAACAAGGGAGGATGAGGTCAAGTTGGTTGGAAGACTCTGTAAATTGCCGGGAAGTCACGCATTTGGGTTCGGAATTGCAGCATTGATCTGTTTGATTGTGGCTCAGGTGGTCGGAAATTTGGTAGTAATATGCAGTCATTTTTGTTCAAGAGAGAAGAAGAGTAGCGGAATACTGATCCTGATTACTGTTGGTTCCACACTAGGCTTAGTGATCATAACTATGAGGAAGAGTCAAGTTGAAGAAGGCTTCAAAGGAGAGCAAAGCAAGCTGAACACCAAGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1218

Protein Analysis

128

Amino Acids

13.63

Weight (kDa)

9.27

Isoelectric Point (pI)

20.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 84, 264
AclWI GGATC 1 cut(s) 268
AcsI RAATTY 1 cut(s) 214
AgsI TTSAA 3 cut(s) 246, 338, 349
AluBI AGCT 1 cut(s) 367
AluI AGCT 1 cut(s) 367
Alw26I GTCTC 1 cut(s) 67
AlwI GGATC 1 cut(s) 268
ApeKI GCWGC 1 cut(s) 176
ApoI RAATTY 1 cut(s) 214
AsuC2I CCSGG 1 cut(s) 147
BbsI GAAGAC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 188
BceAI ACGGC 1 cut(s) 34
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 1 cut(s) 147
BcoDI GTCTC 1 cut(s) 67
BfaI CTAG 1 cut(s) 299
BfmI CTRYAG 1 cut(s) 39
BisI GCNGC 2 cut(s) 84, 177
BlsI GCNGC 2 cut(s) 85, 178
Bme1390I CCNGG 1 cut(s) 147
BmiI GGNNCC 1 cut(s) 292
BmrFI CCNGG 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 136
Bpu10I CCTNAGC 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 147
BsaJI CCNNGG 1 cut(s) 52
BseDI CCNNGG 1 cut(s) 52
BseGI GGATG 1 cut(s) 115
BseMII CTCAG 1 cut(s) 215
BseXI GCAGC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 146
BsmAI GTCTC 1 cut(s) 67
Bsp143I GATC 3 cut(s) 183, 273, 309
BspACI CCGC 2 cut(s) 84, 264
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 292
BspPI GGATC 1 cut(s) 268
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 3 cut(s) 183, 273, 309
Bst4CI ACNGT 2 cut(s) 34, 286
Bst6I CTCTTC 2 cut(s) 251, 320
BstC8I GCNNGC 1 cut(s) 365
BstDEI CTNAG 2 cut(s) 201, 304
BstF5I GGATG 1 cut(s) 115
BstKTI GATC 3 cut(s) 186, 276, 312
BstMAI GTCTC 1 cut(s) 67
BstMBI GATC 3 cut(s) 183, 273, 309
BstMWI GCNNNNNNNGC 1 cut(s) 364
BstSCI CCNGG 1 cut(s) 145
BstSFI CTRYAG 1 cut(s) 39
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 136
BtsCI GGATG 1 cut(s) 115
Cac8I GCNNGC 1 cut(s) 365
CviAII CATG 1 cut(s) 75
CviJI RGCY 6 cut(s) 21, 83, 200, 303, 345, 367
CviKI_1 RGCY 6 cut(s) 21, 83, 200, 303, 345, 367
DdeI CTNAG 2 cut(s) 201, 304
DpnI GATC 3 cut(s) 185, 275, 311
DpnII GATC 3 cut(s) 183, 273, 309
Eam1104I CTCTTC 2 cut(s) 251, 320
EarI CTCTTC 2 cut(s) 251, 320
EcoT22I ATGCAT 1 cut(s) 80
FaeI CATG 1 cut(s) 78
FaiI YATR 5 cut(s) 76, 80, 229, 314, 320
FatI CATG 1 cut(s) 74
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 84, 177
FokI GGATG 1 cut(s) 122
Fsp4HI GCNGC 2 cut(s) 84, 177
FspBI CTAG 1 cut(s) 299
GluI GCNGC 2 cut(s) 84, 177
HapII CCGG 1 cut(s) 146
Hin1II CATG 1 cut(s) 78
HinfI GANTC 2 cut(s) 132, 328
HpaII CCGG 1 cut(s) 146
Hpy188I TCNGA 2 cut(s) 170, 212
Hpy188III TCNNGA 2 cut(s) 246, 277
HpyAV CCTTC 2 cut(s) 76, 335
HpyCH4III ACNGT 2 cut(s) 34, 286
HpyCH4V TGCA 3 cut(s) 78, 176, 231
HpyF10VI GCNNNNNNNGC 1 cut(s) 364
HpyF3I CTNAG 2 cut(s) 201, 304
Hsp92II CATG 1 cut(s) 78
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 3 cut(s) 183, 273, 309
LpnPI CCDG 3 cut(s) 159, 188, 290
Lsp1109I GCAGC 1 cut(s) 188
MaeI CTAG 1 cut(s) 299
MaeIII GTNAC 1 cut(s) 152
MalI GATC 3 cut(s) 185, 275, 311
MboI GATC 3 cut(s) 183, 273, 309
MboII GAAGA 5 cut(s) 141, 265, 268, 337, 350
MluCI AATT 3 cut(s) 140, 171, 214
MlyI GAGTC 2 cut(s) 126, 337
MmeI TCCRAC 2 cut(s) 106, 190
MnlI CCTC 5 cut(s) 58, 62, 100, 106, 315
Mph1103I ATGCAT 1 cut(s) 80
MseI TTAA 1 cut(s) 93
MslI CAYNNNNRTG 1 cut(s) 317
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 147
MwoI GCNNNNNNNGC 1 cut(s) 364
NciI CCSGG 1 cut(s) 147
NdeII GATC 3 cut(s) 183, 273, 309
NlaIII CATG 1 cut(s) 78
NlaIV GGNNCC 1 cut(s) 292
NmeAIII GCCGAG 2 cut(s) 33, 112
NmuCI GTSAC 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 80
PkrI GCNGC 2 cut(s) 85, 178
PleI GAGTC 2 cut(s) 126, 336
PpsI GAGTC 2 cut(s) 126, 336
PspN4I GGNNCC 1 cut(s) 292
RseI CAYNNNNRTG 1 cut(s) 317
SaqAI TTAA 1 cut(s) 93
SatI GCNGC 2 cut(s) 84, 177
Sau3AI GATC 3 cut(s) 183, 273, 309
SchI GAGTC 2 cut(s) 126, 337
ScrFI CCNGG 1 cut(s) 147
SetI ASST 3 cut(s) 117, 207, 369
SfcI CTRYAG 1 cut(s) 39
SmiMI CAYNNNNRTG 1 cut(s) 317
Sse9I AATT 3 cut(s) 140, 171, 214
SsiI CCGC 2 cut(s) 84, 264
SspMI CTAG 1 cut(s) 299
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 2 cut(s) 34, 286
TasI AATT 3 cut(s) 140, 171, 214
TauI GCSGC 1 cut(s) 86
Tru1I TTAA 1 cut(s) 93
Tru9I TTAA 1 cut(s) 93
TseFI GTSAC 1 cut(s) 152
TseI GCWGC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 152
TspDTI ATGAA 1 cut(s) 63
XapI RAATTY 1 cut(s) 214
XspI CTAG 1 cut(s) 299
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.