Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002701.1

Orthogroup ID

OG0009203

Physical Location & Seq

Genomic Coordinates Forward (+)

128267 .. 129431

Gene Structure 1165 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002701.1_g000043.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

atggagaaactccaatacggcttggtgctaactgtgtctgtagtcgcctccctcggcgttgtctccttcttttcatgcgtagccgctgagattaagagaacaagggaggatgaggtcaagttggttggaagactctgtaaattgccgggaagtcacgcatttgggatgagctttgtaatggcagtgacattgataagcacagctactagcatgagcagaaagcaatcctatggagaaggatggcttgatggtgaatgctacctggtcaaacaaggaatctatattggttcaggattactggtcctgattactgttggttccacactaggcttagtgatcataactatgaggaagagtcaagttgaagaaggcttcaaaggagagcaaagcaagctgaacaccaagttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1218

Protein Analysis

136

Amino Acids

14.72

Weight (kDa)

9.05

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0009203)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31720 AT1G31720 AT1G31720 AT1G31720 AT1G31720 AT1G31720 AT1G31720 AT4G19370
fragaria_vesca	FvH4_5g24980
malus_domestica	MD06G1011300.v1.1
prunus_persica	Prupe.5G013600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0215261
rosa_laevigata	RLG00000002676
rosa_multiflora	Rmu_sc0002701.1_g000043 Rmu_sc0007904.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244360
rosa_rugosa	Rorug07G0151600
rosa_samantha	Rh7AG288300 Rh7BG280400 Rh7CG308100 Rh7DG291900
rosa_wichuraiana	Rw7G024640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	84
AgsI	TTSAA	2 cut(s)	365, 376
AjnI	CCWGG	1 cut(s)	261
AluBI	AGCT	3 cut(s)	171, 203, 394
AluI	AGCT	3 cut(s)	171, 203, 394
Alw26I	GTCTC	1 cut(s)	67
AspS9I	GGNCC	1 cut(s)	301
AsuC2I	CCSGG	1 cut(s)	147
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	301
BbsI	GAAGAC	1 cut(s)	136
BccI	CCATC	2 cut(s)	234, 242
BceAI	ACGGC	1 cut(s)	34
BciT130I	CCWGG	1 cut(s)	263
BclI	TGATCA	1 cut(s)	336
BcnI	CCSGG	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	67
BfaI	CTAG	2 cut(s)	207, 326
BfmI	CTRYAG	1 cut(s)	39
BisI	GCNGC	1 cut(s)	84
BlsI	GCNGC	1 cut(s)	85
Bme1390I	CCNGG	2 cut(s)	147, 263
Bme18I	GGWCC	1 cut(s)	301
BmgT120I	GGNCC	1 cut(s)	301
BmiI	GGNNCC	1 cut(s)	319
BmrFI	CCNGG	2 cut(s)	147, 263
BpiI	GAAGAC	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	147
BsaJI	CCNNGG	1 cut(s)	52
Bse1I	ACTGG	1 cut(s)	303
BseBI	CCWGG	1 cut(s)	263
BseDI	CCNNGG	1 cut(s)	52
BseGI	GGATG	3 cut(s)	115, 171, 245
BseMII	CTCAG	1 cut(s)	78
BseNI	ACTGG	1 cut(s)	303
BsiSI	CCGG	1 cut(s)	146
BsmAI	GTCTC	1 cut(s)	67
BsmI	GAATGC	1 cut(s)	260
Bsp143I	GATC	1 cut(s)	336
BspACI	CCGC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	79
BspLI	GGNNCC	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	303
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	1 cut(s)	336
Bst2UI	CCWGG	1 cut(s)	263
Bst4CI	ACNGT	2 cut(s)	34, 313
Bst6I	CTCTTC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	392
BstDEI	CTNAG	2 cut(s)	87, 331
BstF5I	GGATG	3 cut(s)	115, 171, 245
BstKTI	GATC	1 cut(s)	339
BstMAI	GTCTC	1 cut(s)	67
BstMBI	GATC	1 cut(s)	336
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstNI	CCWGG	1 cut(s)	263
BstSCI	CCNGG	2 cut(s)	145, 261
BstSFI	CTRYAG	1 cut(s)	39
BstV2I	GAAGAC	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	115, 171, 245
BtsI	GCAGTG	1 cut(s)	189
BtsIMutI	CAGTG	1 cut(s)	189
Cac8I	GCNNGC	1 cut(s)	392
Cfr13I	GGNCC	1 cut(s)	301
CsiI	ACCWGGT	1 cut(s)	261
CviAII	CATG	2 cut(s)	75, 211
CviJI	RGCY	8 cut(s)	21, 83, 171, 203, 244, 330, 372, 394
CviKI_1	RGCY	8 cut(s)	21, 83, 171, 203, 244, 330, 372, 394
DdeI	CTNAG	2 cut(s)	87, 331
DpnI	GATC	1 cut(s)	338
DpnII	GATC	1 cut(s)	336
Eam1104I	CTCTTC	1 cut(s)	347
EarI	CTCTTC	1 cut(s)	347
Eco47I	GGWCC	1 cut(s)	301
EcoRII	CCWGG	1 cut(s)	261
FaeI	CATG	2 cut(s)	78, 214
FaiI	YATR	6 cut(s)	76, 212, 231, 282, 341, 347
FalI	AAGNNNNNCTT	2 cut(s)	228, 260
FatI	CATG	2 cut(s)	74, 210
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	1 cut(s)	84
FokI	GGATG	3 cut(s)	122, 178, 252
Fsp4HI	GCNGC	1 cut(s)	84
FspBI	CTAG	2 cut(s)	207, 326
GluI	GCNGC	1 cut(s)	84
HapII	CCGG	1 cut(s)	146
Hin1II	CATG	2 cut(s)	78, 214
HinfI	GANTC	3 cut(s)	132, 276, 355
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	263
Hpy188III	TCNNGA	2 cut(s)	291, 304
HpyAV	CCTTC	3 cut(s)	76, 230, 362
HpyCH4III	ACNGT	2 cut(s)	34, 313
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	2 cut(s)	87, 331
Hsp92II	CATG	2 cut(s)	78, 214
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	1 cut(s)	336
LpnPI	CCDG	6 cut(s)	159, 248, 275, 276, 284, 317
MabI	ACCWGGT	1 cut(s)	261
MaeI	CTAG	2 cut(s)	207, 326
MaeIII	GTNAC	2 cut(s)	152, 184
MalI	GATC	1 cut(s)	338
MboI	GATC	1 cut(s)	336
MboII	GAAGA	3 cut(s)	141, 364, 377
MluCI	AATT	1 cut(s)	140
MlyI	GAGTC	2 cut(s)	126, 364
MmeI	TCCRAC	1 cut(s)	106
MnlI	CCTC	5 cut(s)	58, 62, 100, 106, 342
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	344
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	1 cut(s)	146
MspR9I	CCNGG	2 cut(s)	147, 263
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	391
NciI	CCSGG	1 cut(s)	147
NdeII	GATC	1 cut(s)	336
NlaIII	CATG	2 cut(s)	78, 214
NlaIV	GGNNCC	1 cut(s)	319
NmeAIII	GCCGAG	1 cut(s)	33
NmuCI	GTSAC	2 cut(s)	152, 184
PctI	GAATGC	1 cut(s)	260
PfeI	GAWTC	1 cut(s)	276
PkrI	GCNGC	1 cut(s)	85
PleI	GAGTC	2 cut(s)	126, 363
PpsI	GAGTC	2 cut(s)	126, 363
Psp6I	CCWGG	1 cut(s)	261
PspGI	CCWGG	1 cut(s)	261
PspN4I	GGNNCC	1 cut(s)	319
PspPI	GGNCC	1 cut(s)	301
RseI	CAYNNNNRTG	1 cut(s)	344
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	1 cut(s)	84
Sau3AI	GATC	1 cut(s)	336
Sau96I	GGNCC	1 cut(s)	301
SchI	GAGTC	2 cut(s)	126, 364
ScrFI	CCNGG	2 cut(s)	147, 263
SetI	ASST	5 cut(s)	117, 173, 205, 264, 396
SexAI	ACCWGGT	1 cut(s)	261
SfcI	CTRYAG	1 cut(s)	39
SinI	GGWCC	1 cut(s)	301
SmiMI	CAYNNNNRTG	1 cut(s)	344
Sse9I	AATT	1 cut(s)	140
SsiI	CCGC	1 cut(s)	84
SspMI	CTAG	2 cut(s)	207, 326
StyD4I	CCNGG	2 cut(s)	145, 261
TaaI	ACNGT	2 cut(s)	34, 313
TasI	AATT	1 cut(s)	140
TauI	GCSGC	1 cut(s)	86
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	189
TseFI	GTSAC	2 cut(s)	152, 184
Tsp45I	GTSAC	2 cut(s)	152, 184
TspDTI	ATGAA	1 cut(s)	63
TspRI	CASTG	1 cut(s)	189
VpaK11BI	GGWCC	1 cut(s)	301
XspI	CTAG	2 cut(s)	207, 326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.