Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0018983

Physical Location & Seq

Genomic Coordinates Forward (+)

38242768 .. 38243367

Gene Structure 600 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002694

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGAGGTCATCAAGATGCCTTCAAAGGGTAAGAAGAACTCAAAGGCCCAATCGAGGCTGTCCAATTCTGACAGCTTTGCCTCTTCTGGGTCGATTGATTTTGAACCCAATGAAGTGGGTTTTGCCACCTATCTTGAACAAGCTTCCAGCAAATACCTATCTCTAATTGGGAAATTTGCTTTCATTGGTCAAGTCACCAATGTCGATGACACCTCCAAAGGCTGTAAAATTTGGCTTTCAGAGCCTTCCATGGTTGCCAATTCCTTCACTTCTGGCTCCATTGTATCGGTAATGTATTCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA

Protein Analysis

102

Amino Acids

10.89

Weight (kDa)

7.81

Isoelectric Point (pI)

30.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_CI111	PF26429	44 - 97	5.9e-18	CI111 double-psi beta barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018983)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0126221
rosa_laevigata	RLG00000002694 RLG00000007991
rosa_roxburghii	Rroxscaffold_2G00117370 Rroxscaffold_2G00148290
rosa_samantha	Rh1BG184500 Rh2AG318800 Rh3BG281300 Rh6BG474200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	173, 228
AfiI	CCNNNNNNNGG	3 cut(s)	26, 54, 87
AgsI	TTSAA	3 cut(s)	24, 104, 137
AluBI	AGCT	2 cut(s)	75, 143
AluI	AGCT	2 cut(s)	75, 143
AoxI	GGCC	1 cut(s)	45
ApoI	RAATTY	2 cut(s)	173, 228
AspS9I	GGNCC	1 cut(s)	46
AsuHPI	GGTGA	1 cut(s)	187
BmgT120I	GGNCC	1 cut(s)	46
BmiI	GGNNCC	1 cut(s)	277
BmsI	GCATC	1 cut(s)	6
BsaJI	CCNNGG	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 54, 87
BseDI	CCNNGG	1 cut(s)	249
BseLI	CCNNNNNNNGG	3 cut(s)	26, 54, 87
BshFI	GGCC	1 cut(s)	47
BslI	CCNNNNNNNGG	3 cut(s)	26, 54, 87
BsnI	GGCC	1 cut(s)	47
Bsp19I	CCATGG	1 cut(s)	249
BspANI	GGCC	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	277
BssECI	CCNNGG	1 cut(s)	249
BssT1I	CCWWGG	1 cut(s)	249
Bst6I	CTCTTC	1 cut(s)	88
BstDSI	CCRYGG	1 cut(s)	249
BstMWI	GCNNNNNNNGC	1 cut(s)	241
BstXI	CCANNNNNNTGG	1 cut(s)	115
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	249
Cfr13I	GGNCC	1 cut(s)	46
CspCI	CAANNNNNGTGG	2 cut(s)	115, 150
CviAII	CATG	1 cut(s)	250
CviJI	RGCY	8 cut(s)	47, 58, 75, 143, 222, 235, 244, 276
CviKI_1	RGCY	8 cut(s)	47, 58, 75, 143, 222, 235, 244, 276
Eam1104I	CTCTTC	1 cut(s)	88
EarI	CTCTTC	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	249
EcoT14I	CCWWGG	1 cut(s)	249
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	1 cut(s)	253
FaiI	YATR	3 cut(s)	251, 302, 304
FatI	CATG	1 cut(s)	249
HaeIII	GGCC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	253
HindIII	AAGCTT	1 cut(s)	141
HphI	GGTGA	1 cut(s)	187
Hpy188I	TCNGA	2 cut(s)	70, 241
Hpy188III	TCNNGA	2 cut(s)	13, 134
HpyAV	CCTTC	3 cut(s)	30, 255, 274
HpyF10VI	GCNNNNNNNGC	1 cut(s)	241
Hsp92II	CATG	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	281
LpnPI	CCDG	3 cut(s)	72, 160, 258
LweI	GCATC	1 cut(s)	6
MaeIII	GTNAC	1 cut(s)	193
MboII	GAAGA	2 cut(s)	46, 75
MluCI	AATT	5 cut(s)	64, 165, 173, 228, 259
MnlI	CCTC	3 cut(s)	48, 91, 223
MslI	CAYNNNNRTG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	241
NcoI	CCATGG	1 cut(s)	249
NlaIII	CATG	1 cut(s)	253
NlaIV	GGNNCC	1 cut(s)	277
NmuCI	GTSAC	1 cut(s)	193
PspN4I	GGNNCC	1 cut(s)	277
PspPI	GGNCC	1 cut(s)	46
RseI	CAYNNNNRTG	1 cut(s)	14
Sau96I	GGNCC	1 cut(s)	46
SetI	ASST	6 cut(s)	9, 77, 131, 145, 159, 215
SfaNI	GCATC	1 cut(s)	6
SgeI	CNNG	9 cut(s)	25, 66, 99, 146, 152, 159, 203, 262, 285
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	5 cut(s)	64, 165, 173, 228, 259
StyI	CCWWGG	1 cut(s)	249
TaqI	TCGA	3 cut(s)	53, 92, 204
TasI	AATT	5 cut(s)	64, 165, 173, 228, 259
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	126, 172
XapI	RAATTY	2 cut(s)	173, 228

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.