Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0018983

Physical Location & Seq

Genomic Coordinates Forward (+)

85979686 .. 85981342

Gene Structure 1657 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00148290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

ATGGGTTCCTATTTGGCTATGGCCGCAGCCTCAGCAAATCCTCCACATTTTATTCACCTAACCTACAAACCCCTTGGTGAACCTGCTAAGCTTAAATTAGCATGGGTACGTGGTGGTGGCTACAACATCAAGACAGGACCTAGTTGTTCAATTGAGCTTATGAAGGTTGATATGGGAAGTTCAGCAGCTGTATTAGATGCAGCAAAATCCATTGGTCAAATAAAACCTTCTCGTGTAGAGATGCCTTCAAAGGGCAAGAAGAACTCAAAGGCCCAATCGAGGCTGTCGAACTCTGACAGCTTTGCCTCTTCTGGGTCAATCGATTTTGAACCCAATGAAGTTAATTTTGCTACCTCTCTTGAACAAGCTTCCAACAGAAACCCATCTCTGATTGGGAAATCTGCTTTCATTGGTCAAGTCACTGATGTCGATGACACCTCCAAAAGCTGTAAAATTTTGTTTTCAGAGCCTTCCATGGTTGCCAATTCCTTCACTCCTGGCTCCATTATATCGGTGTCACTACCTTGTTTGAGAGGTAGAGTTTCAGAGAGCTTTCCGCTCTACTCATTAGCAGATGAATGTGTTAGATGTTTCGGGGTTGAGTCTTTTGAAGGTTTGGCTAATGAACCAGGGAACTACTTTGCTCTTGCAACTATATTTCCTTCTTCTAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA

Protein Analysis

225

Amino Acids

23.86

Weight (kDa)

8.23

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M17	PF00883	1 - 77	2.5e-09	Cytosol aminopeptidase family, catalytic domain
DPBB_CI111	PF26429	119 - 225	1e-38	CI111 double-psi beta barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0018983)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0126221
rosa_laevigata	RLG00000002694 RLG00000007991
rosa_roxburghii	Rroxscaffold_2G00117370 Rroxscaffold_2G00148290
rosa_samantha	Rh1BG184500 Rh2AG318800 Rh3BG281300 Rh6BG474200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	91
AccBSI	CCGCTC	1 cut(s)	559
AciI	CCGC	2 cut(s)	24, 557
AcoI	YGGCCR	1 cut(s)	21
AcsI	RAATTY	1 cut(s)	453
AfaI	GTAC	1 cut(s)	108
AfiI	CCNNNNNNNGG	3 cut(s)	251, 279, 312
AgsI	TTSAA	5 cut(s)	150, 249, 329, 362, 611
AjnI	CCWGG	2 cut(s)	496, 628
AluBI	AGCT	7 cut(s)	91, 157, 188, 300, 368, 447, 552
AluI	AGCT	7 cut(s)	91, 157, 188, 300, 368, 447, 552
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	2 cut(s)	21, 270
ApeKI	GCWGC	3 cut(s)	26, 185, 200
ApoI	RAATTY	1 cut(s)	453
AspS9I	GGNCC	2 cut(s)	137, 271
AsuHPI	GGTGA	2 cut(s)	47, 89
AvaII	GGWCC	1 cut(s)	137
BauI	CACGAG	1 cut(s)	231
BbvCI	CCTCAGC	1 cut(s)	31
BbvI	GCAGC	3 cut(s)	38, 197, 212
BccI	CCATC	1 cut(s)	391
BciT130I	CCWGG	2 cut(s)	498, 630
BfaI	CTAG	1 cut(s)	141
BfuAI	ACCTGC	1 cut(s)	91
BisI	GCNGC	4 cut(s)	24, 27, 186, 201
BlpI	GCTNAGC	1 cut(s)	87
BlsI	GCNGC	4 cut(s)	25, 28, 187, 202
Bme1390I	CCNGG	2 cut(s)	498, 630
Bme18I	GGWCC	1 cut(s)	137
BmgT120I	GGNCC	2 cut(s)	137, 271
BmiI	GGNNCC	2 cut(s)	7, 502
BmrFI	CCNGG	2 cut(s)	498, 630
BmsI	GCATC	2 cut(s)	187, 231
Bpu10I	CCTNAGC	1 cut(s)	31
Bpu1102I	GCTNAGC	1 cut(s)	87
Bsa29I	ATCGAT	1 cut(s)	321
BsaAI	YACGTR	1 cut(s)	110
BsaJI	CCNNGG	3 cut(s)	73, 474, 629
Bsc4I	CCNNNNNNNGG	3 cut(s)	251, 279, 312
BseBI	CCWGG	2 cut(s)	498, 630
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	3 cut(s)	73, 474, 629
BseLI	CCNNNNNNNGG	3 cut(s)	251, 279, 312
BseMII	CTCAG	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	38, 197, 212
BshFI	GGCC	2 cut(s)	23, 272
BshVI	ATCGAT	1 cut(s)	321
BslI	CCNNNNNNNGG	3 cut(s)	251, 279, 312
BsnI	GGCC	2 cut(s)	23, 272
Bsp1720I	GCTNAGC	1 cut(s)	87
Bsp19I	CCATGG	1 cut(s)	474
BspACI	CCGC	2 cut(s)	24, 557
BspANI	GGCC	2 cut(s)	23, 272
BspCNI	CTCAG	1 cut(s)	44
BspDI	ATCGAT	1 cut(s)	321
BspLI	GGNNCC	2 cut(s)	7, 502
BspMI	ACCTGC	1 cut(s)	91
BsrBI	CCGCTC	1 cut(s)	559
BssECI	CCNNGG	3 cut(s)	73, 474, 629
BssSI	CACGAG	1 cut(s)	231
BssT1I	CCWWGG	2 cut(s)	73, 474
Bst2BI	CACGAG	1 cut(s)	231
Bst2UI	CCWGG	2 cut(s)	498, 630
Bst6I	CTCTTC	1 cut(s)	313
BstBAI	YACGTR	1 cut(s)	110
BstDEI	CTNAG	3 cut(s)	31, 87, 669
BstDSI	CCRYGG	1 cut(s)	474
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 32
BstNI	CCWGG	2 cut(s)	498, 630
BstSCI	CCNGG	2 cut(s)	496, 628
BstV1I	GCAGC	3 cut(s)	38, 197, 212
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	2 cut(s)	23, 272
BsuTUI	ATCGAT	1 cut(s)	321
BtgI	CCRYGG	1 cut(s)	474
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	91
CaiI	CAGNNNCTG	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	137, 271
ClaI	ATCGAT	1 cut(s)	321
Csp6I	GTAC	1 cut(s)	107
CviAII	CATG	2 cut(s)	102, 475
CviQI	GTAC	1 cut(s)	107
DdeI	CTNAG	3 cut(s)	31, 87, 669
EaeI	YGGCCR	1 cut(s)	21
Eam1104I	CTCTTC	1 cut(s)	313
EarI	CTCTTC	1 cut(s)	313
Eco130I	CCWWGG	2 cut(s)	73, 474
Eco47I	GGWCC	1 cut(s)	137
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRII	CCWGG	2 cut(s)	496, 628
EcoT14I	CCWWGG	2 cut(s)	73, 474
ErhI	CCWWGG	2 cut(s)	73, 474
FaeI	CATG	2 cut(s)	105, 478
FaiI	YATR	7 cut(s)	20, 103, 161, 173, 476, 509, 656
FatI	CATG	2 cut(s)	101, 474
Fnu4HI	GCNGC	4 cut(s)	24, 27, 186, 201
Fsp4HI	GCNGC	4 cut(s)	24, 27, 186, 201
FspBI	CTAG	1 cut(s)	141
GluI	GCNGC	4 cut(s)	24, 27, 186, 201
HaeIII	GGCC	2 cut(s)	23, 272
Hin1II	CATG	2 cut(s)	105, 478
HindIII	AAGCTT	2 cut(s)	89, 366
HinfI	GANTC	1 cut(s)	602
HphI	GGTGA	2 cut(s)	47, 89
Hpy166II	GTNNAC	1 cut(s)	80
Hpy188I	TCNGA	4 cut(s)	295, 390, 466, 547
Hpy188III	TCNNGA	2 cut(s)	130, 359
Hpy8I	GTNNAC	1 cut(s)	80
HpyAV	CCTTC	7 cut(s)	157, 237, 255, 480, 499, 605, 672
HpyCH4IV	ACGT	1 cut(s)	109
HpyCH4V	TGCA	2 cut(s)	200, 650
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 32
HpyF3I	CTNAG	3 cut(s)	31, 87, 669
HpySE526I	ACGT	1 cut(s)	109
Hsp92II	CATG	2 cut(s)	105, 478
LmnI	GCTCC	1 cut(s)	506
LpnPI	CCDG	7 cut(s)	96, 120, 297, 483, 510, 615, 642
Lsp1109I	GCAGC	3 cut(s)	38, 197, 212
LweI	GCATC	2 cut(s)	187, 231
MaeI	CTAG	1 cut(s)	141
MaeII	ACGT	1 cut(s)	109
MaeIII	GTNAC	2 cut(s)	418, 516
MbiI	CCGCTC	1 cut(s)	559
MboII	GAAGA	3 cut(s)	271, 300, 657
MfeI	CAATTG	1 cut(s)	150
MluCI	AATT	5 cut(s)	95, 150, 343, 453, 484
MlyI	GAGTC	1 cut(s)	611
MmeI	TCCRAC	1 cut(s)	396
MnlI	CCTC	7 cut(s)	40, 51, 273, 316, 364, 448, 527
MseI	TTAA	2 cut(s)	93, 342
MspA1I	CMGCKG	1 cut(s)	188
MspR9I	CCNGG	2 cut(s)	498, 630
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	2 cut(s)	498, 630
MwoI	GCNNNNNNNGC	2 cut(s)	23, 32
NcoI	CCATGG	1 cut(s)	474
NlaIII	CATG	2 cut(s)	105, 478
NlaIV	GGNNCC	2 cut(s)	7, 502
NmuCI	GTSAC	2 cut(s)	418, 516
PcsI	WCGNNNNNNNCGW	1 cut(s)	284
PkrI	GCNGC	4 cut(s)	25, 28, 187, 202
PleI	GAGTC	1 cut(s)	610
PpsI	GAGTC	1 cut(s)	610
Ppu21I	YACGTR	1 cut(s)	110
PpuMI	RGGWCCY	1 cut(s)	137
Psp5II	RGGWCCY	1 cut(s)	137
Psp6I	CCWGG	2 cut(s)	496, 628
PspGI	CCWGG	2 cut(s)	496, 628
PspN4I	GGNNCC	2 cut(s)	7, 502
PspPI	GGNCC	2 cut(s)	137, 271
PspPPI	RGGWCCY	1 cut(s)	137
PstNI	CAGNNNCTG	1 cut(s)	188
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	108
RsaNI	GTAC	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	93, 342
SatI	GCNGC	4 cut(s)	24, 27, 186, 201
Sau96I	GGNCC	2 cut(s)	137, 271
SchI	GAGTC	1 cut(s)	611
ScrFI	CCNGG	2 cut(s)	498, 630
SfaNI	GCATC	2 cut(s)	187, 231
SinI	GGWCC	1 cut(s)	137
Sse9I	AATT	5 cut(s)	95, 150, 343, 453, 484
SsiI	CCGC	2 cut(s)	24, 557
SspMI	CTAG	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	496, 628
StyI	CCWWGG	2 cut(s)	73, 474
TaiI	ACGT	1 cut(s)	112
TaqI	TCGA	4 cut(s)	278, 287, 321, 429
TasI	AATT	5 cut(s)	95, 150, 343, 453, 484
TauI	GCSGC	1 cut(s)	26
Tru1I	TTAA	2 cut(s)	93, 342
Tru9I	TTAA	2 cut(s)	93, 342
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	2 cut(s)	418, 516
TseI	GCWGC	3 cut(s)	26, 185, 200
Tsp45I	GTSAC	2 cut(s)	418, 516
TspDTI	ATGAA	5 cut(s)	176, 351, 397, 591, 639
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	137
XapI	RAATTY	1 cut(s)	453
XspI	CTAG	1 cut(s)	141

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.