Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0018983

Physical Location & Seq

Genomic Coordinates Reverse (-)

27837657 .. 27839094

Gene Structure 1438 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG281300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGCTCAGCTCGAATCTGGCTTCAATGGAGGTCAACAAGATGCCTTCAAAGGGTAAGAAGAACTCAAAGGCCCAATCGAGGCTGTCCAATTCTGACAGCTTTGCCTCTTCTAGGTCGATTGATTTTGAACCCAATGAAGTGGGTTTTGCCACCTCTCTTGAACAAGCTTCCAGCAAATACCTATCTCTGATTGGAAAATTTGCTTTCATTGGTCAAGTCACCGATGTCGATGACACCTCCAAAGGCTGTAAAAATTGGCTTTCAGAACCTTCCATGGTTGCCAATTCCTTCACTCCTGGCTCCATTGTATCGGTGCAAAGGTTTAGTTATATGACGCAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA

Protein Analysis

113

Amino Acids

12.28

Weight (kDa)

8.79

Isoelectric Point (pI)

40.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_CI111	PF26429	52 - 106	2e-17	CI111 double-psi beta barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018983)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0126221
rosa_laevigata	RLG00000002694 RLG00000007991
rosa_roxburghii	Rroxscaffold_2G00117370 Rroxscaffold_2G00148290
rosa_samantha	Rh1BG184500 Rh2AG318800 Rh3BG281300 Rh6BG474200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	197
AfiI	CCNNNNNNNGG	3 cut(s)	50, 78, 111
AgsI	TTSAA	4 cut(s)	24, 48, 128, 161
AjnI	CCWGG	1 cut(s)	295
AluBI	AGCT	3 cut(s)	9, 99, 167
AluI	AGCT	3 cut(s)	9, 99, 167
AoxI	GGCC	1 cut(s)	69
ApoI	RAATTY	1 cut(s)	197
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	211
BciT130I	CCWGG	1 cut(s)	297
BfaI	CTAG	1 cut(s)	111
BlpI	GCTNAGC	1 cut(s)	5
Bme1390I	CCNGG	1 cut(s)	297
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	301
BmrFI	CCNGG	1 cut(s)	297
BmsI	GCATC	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	5
BsaJI	CCNNGG	1 cut(s)	273
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 78, 111
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	1 cut(s)	273
BseLI	CCNNNNNNNGG	3 cut(s)	50, 78, 111
BseMII	CTCAG	1 cut(s)	19
BshFI	GGCC	1 cut(s)	71
BslI	CCNNNNNNNGG	3 cut(s)	50, 78, 111
BsnI	GGCC	1 cut(s)	71
Bsp1720I	GCTNAGC	1 cut(s)	5
Bsp19I	CCATGG	1 cut(s)	273
BspANI	GGCC	1 cut(s)	71
BspCNI	CTCAG	1 cut(s)	18
BspLI	GGNNCC	1 cut(s)	301
BssECI	CCNNGG	1 cut(s)	273
BssT1I	CCWWGG	1 cut(s)	273
Bst2UI	CCWGG	1 cut(s)	297
Bst6I	CTCTTC	1 cut(s)	112
BstDEI	CTNAG	1 cut(s)	5
BstDSI	CCRYGG	1 cut(s)	273
BstENI	CCTNNNNNAGG	1 cut(s)	109
BstNI	CCWGG	1 cut(s)	297
BstSCI	CCNGG	1 cut(s)	295
BstXI	CCANNNNNNTGG	1 cut(s)	139
BsuRI	GGCC	1 cut(s)	71
BtgI	CCRYGG	1 cut(s)	273
Cfr13I	GGNCC	1 cut(s)	70
CspCI	CAANNNNNGTGG	2 cut(s)	139, 174
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	9 cut(s)	9, 20, 71, 82, 99, 167, 246, 259, 300
CviKI_1	RGCY	9 cut(s)	9, 20, 71, 82, 99, 167, 246, 259, 300
DdeI	CTNAG	1 cut(s)	5
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	273
EcoNI	CCTNNNNNAGG	1 cut(s)	109
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	1 cut(s)	273
ErhI	CCWWGG	1 cut(s)	273
FaeI	CATG	1 cut(s)	277
FaiI	YATR	3 cut(s)	275, 330, 332
FatI	CATG	1 cut(s)	273
FspBI	CTAG	1 cut(s)	111
HaeIII	GGCC	1 cut(s)	71
Hin1II	CATG	1 cut(s)	277
HincII	GTYRAC	1 cut(s)	34
HindII	GTYRAC	1 cut(s)	34
HindIII	AAGCTT	1 cut(s)	165
HinfI	GANTC	1 cut(s)	13
HphI	GGTGA	1 cut(s)	211
Hpy166II	GTNNAC	1 cut(s)	34
Hpy188I	TCNGA	3 cut(s)	94, 189, 265
Hpy188III	TCNNGA	1 cut(s)	158
Hpy8I	GTNNAC	1 cut(s)	34
HpyAV	CCTTC	3 cut(s)	54, 279, 298
HpyCH4V	TGCA	1 cut(s)	316
HpyF3I	CTNAG	1 cut(s)	5
Hsp92II	CATG	1 cut(s)	277
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	4 cut(s)	2, 184, 282, 309
LweI	GCATC	1 cut(s)	30
MaeI	CTAG	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	217
MboII	GAAGA	2 cut(s)	70, 99
MluCI	AATT	4 cut(s)	88, 197, 253, 283
MnlI	CCTC	5 cut(s)	22, 72, 115, 163, 247
MspR9I	CCNGG	1 cut(s)	297
MvaI	CCWGG	1 cut(s)	297
NcoI	CCATGG	1 cut(s)	273
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	301
NmuCI	GTSAC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	13
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	1 cut(s)	301
PspPI	GGNCC	1 cut(s)	70
Sau96I	GGNCC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	297
SfaNI	GCATC	1 cut(s)	30
Sse9I	AATT	4 cut(s)	88, 197, 253, 283
SspMI	CTAG	1 cut(s)	111
StyD4I	CCNGG	1 cut(s)	295
StyI	CCWWGG	1 cut(s)	273
TaqI	TCGA	4 cut(s)	11, 77, 116, 228
TasI	AATT	4 cut(s)	88, 197, 253, 283
TfiI	GAWTC	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	217
Tsp45I	GTSAC	1 cut(s)	217
TspDTI	ATGAA	2 cut(s)	150, 196
XagI	CCTNNNNNAGG	1 cut(s)	109
XapI	RAATTY	1 cut(s)	197
XspI	CTAG	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.