Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0018983

Physical Location & Seq

Genomic Coordinates Reverse (-)

68071765 .. 68072802

Gene Structure 1038 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG474200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 591 bp

ATGCCTTCAAAGGGCAAGAAGAACTCAAAGTCCCAATCGAGGCTGTCCAATTCTGACAGCTTTGCCTCTTCTGGGTCGATCGATTTTGAACCCAATGAAGTTAATTTTGCTACCTCTCTTGAACAAGCTTCCAGCAAATACCCATCTCTGATTGGGAAATCTGCTTTCATTGGCCAAGTCACCGATGTCGATGACACCTCCAAAAGCTGTAAAATTTGGCTTTCAGTGCCTTCCATGGTTGCCAATTCCTTCACTCCTGGCTCCATTGTATCGGTGTCACTACCTTGTTTGAGAAGTAGAGTTTCAGAGAGCTTTCCTCTCAGCTCATTAGCAGATGAATGTGTTAGATGTTTCGGGGTTGAGTCTTCCGAAGGTTTGGCTAATGAACCAGGGAACTACTTTGCTCTTGCAACTATATTTCCTTCTTCTAAGAGAACCCATAAGAGGCAGAAGCTGGGAGCAAAATTAACTTCATTGGGTTCAAAATCGATCGACCCAGAAGAGGCAAAGCTGTCAGAATTGGACAGCCTCGATTGGGACTTTGAGTTCTTCTTGCCCTTTGAAGGCATCTGTAATAATACAAGCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005516 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031976 GO:0031984 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0055035

KEGG Pathways

Metabolic & Signaling

ko03008 map03008

Pfam Domains

Protein Families

AAA

Protein Analysis

196

Amino Acids

21.19

Weight (kDa)

5.54

Isoelectric Point (pI)

49.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DPBB_CI111	PF26429	39 - 157	2.4e-44	CI111 double-psi beta barrel domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0018983)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0126221
rosa_laevigata	RLG00000002694 RLG00000007991
rosa_roxburghii	Rroxscaffold_2G00117370 Rroxscaffold_2G00148290
rosa_samantha	Rh1BG184500 Rh2AG318800 Rh3BG281300 Rh6BG474200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcoI	YGGCCR	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	213
AfiI	CCNNNNNNNGG	7 cut(s)	11, 39, 72, 444, 502, 535, 563
AgsI	TTSAA	5 cut(s)	9, 89, 122, 483, 563
AjnI	CCWGG	2 cut(s)	256, 388
AloI	GAACNNNNNNTCC	4 cut(s)	14, 46, 530, 562
AluBI	AGCT	7 cut(s)	60, 128, 207, 312, 324, 454, 511
AluI	AGCT	7 cut(s)	60, 128, 207, 312, 324, 454, 511
AlwNI	CAGNNNCTG	1 cut(s)	454
AoxI	GGCC	1 cut(s)	172
ApoI	RAATTY	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	357
BccI	CCATC	1 cut(s)	151
BciT130I	CCWGG	2 cut(s)	258, 390
Bme1390I	CCNGG	2 cut(s)	258, 390
BmiI	GGNNCC	1 cut(s)	262
BmrFI	CCNGG	2 cut(s)	258, 390
BmsI	GCATC	1 cut(s)	576
BpiI	GAAGAC	1 cut(s)	357
BplI	GAGNNNNNCTC	2 cut(s)	301, 333
Bsa29I	ATCGAT	2 cut(s)	81, 488
BsaJI	CCNNGG	2 cut(s)	234, 389
Bsc4I	CCNNNNNNNGG	7 cut(s)	11, 39, 72, 444, 502, 535, 563
BseBI	CCWGG	2 cut(s)	258, 390
BseCI	ATCGAT	2 cut(s)	81, 488
BseDI	CCNNGG	2 cut(s)	234, 389
BseLI	CCNNNNNNNGG	7 cut(s)	11, 39, 72, 444, 502, 535, 563
BseMII	CTCAG	1 cut(s)	334
BseYI	CCCAGC	1 cut(s)	454
Bsh1285I	CGRYCG	2 cut(s)	81, 492
BshFI	GGCC	1 cut(s)	174
BshVI	ATCGAT	2 cut(s)	81, 488
BsiEI	CGRYCG	2 cut(s)	81, 492
BslFI	GGGAC	2 cut(s)	16, 551
BslI	CCNNNNNNNGG	7 cut(s)	11, 39, 72, 444, 502, 535, 563
BsmFI	GGGAC	2 cut(s)	16, 551
BsnI	GGCC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	78, 489
Bsp19I	CCATGG	1 cut(s)	234
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	1 cut(s)	333
BspDI	ATCGAT	2 cut(s)	81, 488
BspLI	GGNNCC	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	234, 389
BssMI	GATC	2 cut(s)	78, 489
BssT1I	CCWWGG	1 cut(s)	234
Bst2UI	CCWGG	2 cut(s)	258, 390
Bst6I	CTCTTC	2 cut(s)	73, 495
BstDEI	CTNAG	2 cut(s)	320, 429
BstDSI	CCRYGG	1 cut(s)	234
BstKTI	GATC	2 cut(s)	81, 492
BstMBI	GATC	2 cut(s)	78, 489
BstMCI	CGRYCG	2 cut(s)	81, 492
BstMWI	GCNNNNNNNGC	1 cut(s)	226
BstNI	CCWGG	2 cut(s)	258, 390
BstSCI	CCNGG	2 cut(s)	256, 388
BstV2I	GAAGAC	1 cut(s)	357
Bsu15I	ATCGAT	2 cut(s)	81, 488
BsuRI	GGCC	1 cut(s)	174
BsuTUI	ATCGAT	2 cut(s)	81, 488
BtgI	CCRYGG	1 cut(s)	234
BtsIMutI	CAGTG	1 cut(s)	231
CaiI	CAGNNNCTG	1 cut(s)	454
ClaI	ATCGAT	2 cut(s)	81, 488
CviAII	CATG	1 cut(s)	235
DdeI	CTNAG	2 cut(s)	320, 429
DpnI	GATC	2 cut(s)	80, 491
DpnII	GATC	2 cut(s)	78, 489
EaeI	YGGCCR	1 cut(s)	172
Eam1104I	CTCTTC	2 cut(s)	73, 495
EarI	CTCTTC	2 cut(s)	73, 495
Eco130I	CCWWGG	1 cut(s)	234
EcoRII	CCWGG	2 cut(s)	256, 388
EcoT14I	CCWWGG	1 cut(s)	234
ErhI	CCWWGG	1 cut(s)	234
FaeI	CATG	1 cut(s)	238
FaiI	YATR	3 cut(s)	236, 416, 441
FaqI	GGGAC	2 cut(s)	16, 551
FatI	CATG	1 cut(s)	234
GsaI	CCCAGC	1 cut(s)	458
HaeIII	GGCC	1 cut(s)	174
Hin1II	CATG	1 cut(s)	238
HindIII	AAGCTT	1 cut(s)	126
HinfI	GANTC	1 cut(s)	362
HphI	GGTGA	1 cut(s)	172
Hpy188I	TCNGA	5 cut(s)	55, 150, 307, 370, 517
Hpy188III	TCNNGA	1 cut(s)	119
HpyAV	CCTTC	6 cut(s)	15, 240, 259, 365, 432, 557
HpyCH4V	TGCA	1 cut(s)	410
HpyF10VI	GCNNNNNNNGC	1 cut(s)	226
HpyF3I	CTNAG	2 cut(s)	320, 429
Hsp92II	CATG	1 cut(s)	238
Kzo9I	GATC	2 cut(s)	78, 489
LmnI	GCTCC	2 cut(s)	266, 458
LpnPI	CCDG	8 cut(s)	57, 145, 243, 270, 375, 402, 440, 510
LweI	GCATC	1 cut(s)	576
MaeIII	GTNAC	2 cut(s)	178, 276
MalI	GATC	2 cut(s)	80, 491
MboI	GATC	2 cut(s)	78, 489
MboII	GAAGA	6 cut(s)	31, 60, 357, 417, 512, 541
MlsI	TGGCCA	1 cut(s)	174
MluCI	AATT	6 cut(s)	49, 103, 213, 244, 464, 518
MluNI	TGGCCA	1 cut(s)	174
MlyI	GAGTC	1 cut(s)	371
MnlI	CCTC	8 cut(s)	33, 76, 124, 208, 327, 438, 496, 539
Mox20I	TGGCCA	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	174
MseI	TTAA	2 cut(s)	102, 467
Msp20I	TGGCCA	1 cut(s)	174
MspR9I	CCNGG	2 cut(s)	258, 390
MvaI	CCWGG	2 cut(s)	258, 390
MwoI	GCNNNNNNNGC	1 cut(s)	226
NcoI	CCATGG	1 cut(s)	234
NdeII	GATC	2 cut(s)	78, 489
NlaIII	CATG	1 cut(s)	238
NlaIV	GGNNCC	1 cut(s)	262
NmuCI	GTSAC	2 cut(s)	178, 276
Ple19I	CGATCG	2 cut(s)	81, 492
PleI	GAGTC	1 cut(s)	370
PpsI	GAGTC	1 cut(s)	370
Psp6I	CCWGG	2 cut(s)	256, 388
PspFI	CCCAGC	1 cut(s)	454
PspGI	CCWGG	2 cut(s)	256, 388
PspN4I	GGNNCC	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	454
PvuI	CGATCG	2 cut(s)	81, 492
SaqAI	TTAA	2 cut(s)	102, 467
Sau3AI	GATC	2 cut(s)	78, 489
SchI	GAGTC	1 cut(s)	371
ScrFI	CCNGG	2 cut(s)	258, 390
SfaNI	GCATC	1 cut(s)	576
Sse9I	AATT	6 cut(s)	49, 103, 213, 244, 464, 518
StyD4I	CCNGG	2 cut(s)	256, 388
StyI	CCWWGG	1 cut(s)	234
TaqI	TCGA	7 cut(s)	38, 77, 81, 189, 488, 492, 531
TasI	AATT	6 cut(s)	49, 103, 213, 244, 464, 518
Tru1I	TTAA	2 cut(s)	102, 467
Tru9I	TTAA	2 cut(s)	102, 467
TscAI	CASTG	1 cut(s)	231
TseFI	GTSAC	2 cut(s)	178, 276
Tsp45I	GTSAC	2 cut(s)	178, 276
TspDTI	ATGAA	5 cut(s)	111, 157, 351, 399, 462
TspRI	CASTG	1 cut(s)	231
XapI	RAATTY	1 cut(s)	213

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.