Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0019048

Physical Location & Seq

Genomic Coordinates Reverse (-)

39050659 .. 39052445

Gene Structure 1787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000002746

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGCGACCGATGCTTGTCTCCATTCACGGTGGAGAAACCCTCTCCACACCCTGCAGTCCAATCTCAGCACTCCAACGTTGGTTCTTCCCGGCAACCATCCAACAAAACCAAGGTTTGAAACTTTCATGGGTTCTGATCCTTGTAGGATTGATTTCGATCCAGACCGGCTGGTTATGGTCGGCTGTTTGAGGCCCAAGAGGGGGCGACTGAAATCGCATGTGTGGCTGAAGCTATGGATGAAAAGAATGAGCGTGAAGGCAGCGTTTCTTAGAGCGAGAGTGGAGCCATTGCTTTGGAGGCTAATCTCAATTCGAAGTGGTTTCGGCTCAACTCCTCACCCCCAAATGAATACTGTTCTGGCAAGGAGGGCAGTGGTGTGGGTGGGGTGTGAAATGATGTCGGCACGGGATGCCGCGGCTACGATGGCGTCTGAAGACGAAGTGGAGTCCGACGTAGATAGGGCTGCTCCCATAGTAGTCTGGAATGAGCTCTCCAACCATTTCCTCTCACTCGATCAAAAGCTCCTTCAGAAATCGGAGGCCATCAAGCTCAAAATCCAAATCCTAGAGCACAAGATCAAGGAGAGCCTCGACGAGCTTGAGCAGCGAGAGAACACCATCAACCAAAGTGTCGAGATCCCGCTCGTCAAGGTAGAGGAGACCAAGAAGGCCGTGCTGAAGGTCCTTAAGAGAGCCCGCTCCGACGACGAGTACAGCGAGGTGGATAATAGTGAGGGGTTGTTGATGGAGATGAAGTCGCTATGCTTGAAGATGGATTCGGGGATAGTTGTAGAGAAAGAGATGAGCTTTTGCAGTTTTGGCGTTGTTGGGGATGGGTCGAAACGAAGTTGGATTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Frigida

Protein Analysis

286

Amino Acids

32.41

Weight (kDa)

8.69

Isoelectric Point (pI)

45.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019048)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002746 RLG00000030478
rosa_multiflora	Rmu_co8279067.1_g000001 Rmu_sc0001803.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105510 Rroxscaffold_3G00255670 Rroxscaffold_3G00255740 Rroxscaffold_5G00351220 Rroxscaffold_5G00351770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	643, 699
AccII	CGCG	1 cut(s)	416
AciI	CCGC	4 cut(s)	414, 416, 641, 697
AclI	AACGTT	1 cut(s)	77
AclWI	GGATC	3 cut(s)	131, 152, 631
AcuI	CTGAAG	4 cut(s)	248, 453, 512, 698
AcyI	GRCGYC	1 cut(s)	428
AfaI	GTAC	1 cut(s)	713
AfiI	CCNNNNNNNGG	2 cut(s)	200, 201
AflII	CTTAAG	1 cut(s)	686
AgsI	TTSAA	2 cut(s)	119, 769
AluBI	AGCT	6 cut(s)	232, 490, 523, 550, 598, 807
AluI	AGCT	6 cut(s)	232, 490, 523, 550, 598, 807
Alw21I	GWGCWC	2 cut(s)	492, 573
Alw26I	GTCTC	2 cut(s)	23, 653
AlwI	GGATC	3 cut(s)	131, 152, 631
AoxI	GGCC	3 cut(s)	191, 540, 669
ApeKI	GCWGC	3 cut(s)	260, 464, 604
AspS9I	GGNCC	2 cut(s)	192, 682
AsuC2I	CCSGG	1 cut(s)	90
AsuHPI	GGTGA	1 cut(s)	329
AsuII	TTCGAA	1 cut(s)	313
AvaII	GGWCC	1 cut(s)	682
BanII	GRGCYC	2 cut(s)	492, 697
BbsI	GAAGAC	1 cut(s)	441
Bbv12I	GWGCWC	2 cut(s)	492, 573
BbvI	GCAGC	3 cut(s)	272, 451, 616
BccI	CCATC	7 cut(s)	105, 418, 551, 626, 739, 766, 827
BceAI	ACGGC	1 cut(s)	656
BcnI	CCSGG	1 cut(s)	90
BcoDI	GTCTC	2 cut(s)	23, 653
BfaI	CTAG	1 cut(s)	566
BfmI	CTRYAG	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	686
BisI	GCNGC	5 cut(s)	261, 414, 417, 465, 605
BlsI	GCNGC	5 cut(s)	262, 415, 418, 466, 606
Bme1390I	CCNGG	1 cut(s)	90
Bme18I	GGWCC	1 cut(s)	682
BmgT120I	GGNCC	2 cut(s)	192, 682
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	90
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	441
BplI	GAGNNNNNCTC	2 cut(s)	25, 57
Bpu14I	TTCGAA	1 cut(s)	313
BpuEI	CTTGAG	1 cut(s)	620
BpuMI	CCSGG	1 cut(s)	90
BsaBI	GATNNNNATC	1 cut(s)	156
BsaHI	GRCGYC	1 cut(s)	428
BsaI	GGTCTC	1 cut(s)	653
BsaJI	CCNNGG	2 cut(s)	110, 414
BsaXI	ACNNNNNCTCC	2 cut(s)	740, 770
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 201
Bse118I	RCCGGY	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	287
Bse8I	GATNNNNATC	1 cut(s)	156
BseDI	CCNNGG	2 cut(s)	110, 414
BseGI	GGATG	4 cut(s)	97, 243, 415, 838
BseJI	GATNNNNATC	1 cut(s)	156
BseLI	CCNNNNNNNGG	2 cut(s)	200, 201
BseMI	GCAATG	1 cut(s)	287
BseMII	CTCAG	1 cut(s)	79
BseRI	GAGGAG	2 cut(s)	324, 671
BseXI	GCAGC	3 cut(s)	272, 451, 616
Bsh1236I	CGCG	1 cut(s)	416
Bsh1285I	CGRYCG	1 cut(s)	9
BshFI	GGCC	3 cut(s)	193, 542, 671
BsiEI	CGRYCG	1 cut(s)	9
BsiHKAI	GWGCWC	2 cut(s)	492, 573
BsiSI	CCGG	2 cut(s)	90, 166
BslI	CCNNNNNNNGG	2 cut(s)	200, 201
BsmAI	GTCTC	2 cut(s)	23, 653
BsnI	GGCC	3 cut(s)	193, 542, 671
Bso31I	GGTCTC	1 cut(s)	653
Bsp119I	TTCGAA	1 cut(s)	313
Bsp1286I	GDGCHC	3 cut(s)	492, 573, 697
Bsp143I	GATC	5 cut(s)	136, 157, 514, 576, 636
BspACI	CCGC	4 cut(s)	414, 416, 641, 697
BspANI	GGCC	3 cut(s)	193, 542, 671
BspCNI	CTCAG	1 cut(s)	78
BspFNI	CGCG	1 cut(s)	416
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	1 cut(s)	57
BspPI	GGATC	3 cut(s)	131, 152, 631
BspT104I	TTCGAA	1 cut(s)	313
BspTI	CTTAAG	1 cut(s)	686
BspTNI	GGTCTC	1 cut(s)	653
BsrBI	CCGCTC	2 cut(s)	643, 699
BsrDI	GCAATG	1 cut(s)	287
BsrFI	RCCGGY	1 cut(s)	165
BssAI	RCCGGY	1 cut(s)	165
BssECI	CCNNGG	2 cut(s)	110, 414
BssMI	GATC	5 cut(s)	136, 157, 514, 576, 636
BssNI	GRCGYC	1 cut(s)	428
BssT1I	CCWWGG	1 cut(s)	110
Bst4CI	ACNGT	2 cut(s)	30, 355
BstACI	GRCGYC	1 cut(s)	428
BstAFI	CTTAAG	1 cut(s)	686
BstAPI	GCANNNNNTGC	1 cut(s)	410
BstBI	TTCGAA	1 cut(s)	313
BstC8I	GCNNGC	1 cut(s)	697
BstDEI	CTNAG	2 cut(s)	65, 269
BstDSI	CCRYGG	1 cut(s)	414
BstF5I	GGATG	4 cut(s)	97, 243, 415, 838
BstFNI	CGCG	1 cut(s)	416
BstKTI	GATC	5 cut(s)	139, 160, 517, 579, 639
BstMAI	GTCTC	2 cut(s)	23, 653
BstMBI	GATC	5 cut(s)	136, 157, 514, 576, 636
BstMCI	CGRYCG	1 cut(s)	9
BstMWI	GCNNNNNNNGC	8 cut(s)	11, 223, 298, 368, 410, 425, 604, 819
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	88
BstSFI	CTRYAG	1 cut(s)	53
BstUI	CGCG	1 cut(s)	416
BstV1I	GCAGC	3 cut(s)	272, 451, 616
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	1 cut(s)	636
BstXI	CCANNNNNNTGG	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	636
BsuRI	GGCC	3 cut(s)	193, 542, 671
BtgI	CCRYGG	1 cut(s)	414
BtsCI	GGATG	4 cut(s)	97, 243, 415, 838
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	1 cut(s)	378
Cac8I	GCNNGC	1 cut(s)	697
Cfr10I	RCCGGY	1 cut(s)	165
Cfr13I	GGNCC	2 cut(s)	192, 682
Cfr42I	CCGCGG	1 cut(s)	417
CseI	GACGC	1 cut(s)	417
Csp6I	GTAC	1 cut(s)	712
CviAII	CATG	2 cut(s)	127, 218
CviQI	GTAC	1 cut(s)	712
DdeI	CTNAG	2 cut(s)	65, 269
DpnI	GATC	5 cut(s)	138, 159, 516, 578, 638
DpnII	GATC	5 cut(s)	136, 157, 514, 576, 636
Ecl136II	GAGCTC	1 cut(s)	490
Eco130I	CCWWGG	1 cut(s)	110
Eco24I	GRGCYC	2 cut(s)	492, 697
Eco31I	GGTCTC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	682
Eco53kI	GAGCTC	1 cut(s)	490
Eco57I	CTGAAG	4 cut(s)	248, 453, 512, 698
EcoICRI	GAGCTC	1 cut(s)	490
EcoO109I	RGGNCCY	1 cut(s)	682
EcoT14I	CCWWGG	1 cut(s)	110
EcoT38I	GRGCYC	2 cut(s)	492, 697
ErhI	CCWWGG	1 cut(s)	110
FaeI	CATG	2 cut(s)	130, 221
FaiI	YATR	6 cut(s)	128, 176, 219, 235, 473, 763
FatI	CATG	2 cut(s)	126, 217
FauI	CCCGC	2 cut(s)	648, 704
Fnu4HI	GCNGC	5 cut(s)	261, 414, 417, 465, 605
FokI	GGATG	4 cut(s)	84, 250, 422, 845
FriOI	GRGCYC	2 cut(s)	492, 697
Fsp4HI	GCNGC	5 cut(s)	261, 414, 417, 465, 605
FspBI	CTAG	1 cut(s)	566
GluI	GCNGC	5 cut(s)	261, 414, 417, 465, 605
HaeIII	GGCC	3 cut(s)	193, 542, 671
HapII	CCGG	2 cut(s)	90, 166
HgaI	GACGC	1 cut(s)	417
Hin1I	GRCGYC	1 cut(s)	428
Hin1II	CATG	2 cut(s)	130, 221
HinfI	GANTC	2 cut(s)	446, 776
HpaII	CCGG	2 cut(s)	90, 166
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	6 cut(s)	136, 433, 451, 531, 538, 703
Hpy188III	TCNNGA	3 cut(s)	161, 481, 634
Hpy99I	CGWCG	4 cut(s)	455, 596, 707, 710
HpyAV	CCTTC	4 cut(s)	250, 536, 661, 673
HpyCH4III	ACNGT	2 cut(s)	30, 355
HpyCH4IV	ACGT	2 cut(s)	77, 453
HpyCH4V	TGCA	2 cut(s)	55, 813
HpyF10VI	GCNNNNNNNGC	8 cut(s)	11, 223, 298, 368, 410, 425, 604, 819
HpyF3I	CTNAG	2 cut(s)	65, 269
HpySE526I	ACGT	2 cut(s)	77, 453
Hsp92I	GRCGYC	1 cut(s)	428
Hsp92II	CATG	2 cut(s)	130, 221
KspI	CCGCGG	1 cut(s)	417
Kzo9I	GATC	5 cut(s)	136, 157, 514, 576, 636
LmnI	GCTCC	4 cut(s)	283, 472, 528, 704
LpnPI	CCDG	7 cut(s)	65, 103, 155, 174, 179, 344, 466
Lsp1109I	GCAGC	3 cut(s)	272, 451, 616
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	1 cut(s)	566
MaeII	ACGT	2 cut(s)	77, 453
MalI	GATC	5 cut(s)	138, 159, 516, 578, 638
MbiI	CCGCTC	2 cut(s)	643, 699
MboI	GATC	5 cut(s)	136, 157, 514, 576, 636
MboII	GAAGA	3 cut(s)	77, 446, 781
MflI	RGATCY	1 cut(s)	636
MhlI	GDGCHC	3 cut(s)	492, 573, 697
MluCI	AATT	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	455
MmeI	TCCRAC	6 cut(s)	98, 125, 474, 519, 726, 830
MseI	TTAA	2 cut(s)	687, 856
MspA1I	CMGCKG	1 cut(s)	416
MspCI	CTTAAG	1 cut(s)	686
MspI	CCGG	2 cut(s)	90, 166
MspR9I	CCNGG	1 cut(s)	90
MvnI	CGCG	1 cut(s)	416
MwoI	GCNNNNNNNGC	8 cut(s)	11, 223, 298, 368, 410, 425, 604, 819
NciI	CCSGG	1 cut(s)	90
NdeII	GATC	5 cut(s)	136, 157, 514, 576, 636
NlaIII	CATG	2 cut(s)	130, 221
NlaIV	GGNNCC	1 cut(s)	285
NspI	RCATGY	1 cut(s)	221
NspV	TTCGAA	1 cut(s)	313
PcsI	WCGNNNNNNNCGW	1 cut(s)	714
PfeI	GAWTC	1 cut(s)	776
PkrI	GCNGC	5 cut(s)	262, 415, 418, 466, 606
PleI	GAGTC	1 cut(s)	454
PpsI	GAGTC	1 cut(s)	454
PpuMI	RGGWCCY	1 cut(s)	682
Psp124BI	GAGCTC	1 cut(s)	492
Psp1406I	AACGTT	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	682
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	2 cut(s)	192, 682
PspPPI	RGGWCCY	1 cut(s)	682
PstI	CTGCAG	1 cut(s)	57
PsuI	RGATCY	1 cut(s)	636
RsaI	GTAC	1 cut(s)	713
RsaNI	GTAC	1 cut(s)	712
SacI	GAGCTC	1 cut(s)	492
SacII	CCGCGG	1 cut(s)	417
SaqAI	TTAA	2 cut(s)	687, 856
SatI	GCNGC	5 cut(s)	261, 414, 417, 465, 605
Sau3AI	GATC	5 cut(s)	136, 157, 514, 576, 636
Sau96I	GGNCC	2 cut(s)	192, 682
SchI	GAGTC	1 cut(s)	455
ScrFI	CCNGG	1 cut(s)	90
SduI	GDGCHC	3 cut(s)	492, 573, 697
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	1 cut(s)	53
Sfr303I	CCGCGG	1 cut(s)	417
SfuI	TTCGAA	1 cut(s)	313
SgrBI	CCGCGG	1 cut(s)	417
SinI	GGWCC	1 cut(s)	682
SmlI	CTYRAG	2 cut(s)	599, 686
SmoI	CTYRAG	2 cut(s)	599, 686
Sse9I	AATT	1 cut(s)	309
SsiI	CCGC	4 cut(s)	414, 416, 641, 697
SspMI	CTAG	1 cut(s)	566
SstI	GAGCTC	1 cut(s)	492
StyD4I	CCNGG	1 cut(s)	88
StyI	CCWWGG	1 cut(s)	110
TaaI	ACNGT	2 cut(s)	30, 355
TaiI	ACGT	2 cut(s)	80, 456
TaqI	TCGA	6 cut(s)	156, 313, 513, 591, 633, 839
TaqII	GACCGA	1 cut(s)	23
TasI	AATT	1 cut(s)	309
TatI	WGTACW	1 cut(s)	711
TauI	GCSGC	2 cut(s)	416, 419
TfiI	GAWTC	1 cut(s)	776
Tru1I	TTAA	2 cut(s)	687, 856
Tru9I	TTAA	2 cut(s)	687, 856
TscAI	CASTG	1 cut(s)	378
TseI	GCWGC	3 cut(s)	260, 464, 604
TspDTI	ATGAA	4 cut(s)	115, 254, 362, 767
TspRI	CASTG	1 cut(s)	378
Vha464I	CTTAAG	1 cut(s)	686
VpaK11BI	GGWCC	1 cut(s)	682
XceI	RCATGY	1 cut(s)	221
XspI	CTAG	1 cut(s)	566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.