Rmu_co8279067.1_g000001

Belongs to the Frigida family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8279067.1
OG0019048
Physical Location & Seq
Forward (+)
1 .. 455
455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8279067.1_g000001.1.cds

Sequence Viewer

Length: 332 bp
agcacgagacgaaggagagcctcgaccagctcgagcagcgagagattaccaccaaccagagcgttgagatcgcactcgtcaaggtcgaggagaccaagaaggccgtgctcaaggtcctcaagcgagcctgctccgatgatgagtgcgatgaggtggacaacaacgaggggttgatggagatgaagttgttatgcttgaagatggagatccaactctttggacctggatctcgtgaccattggcgcccatccaaagtgagacgacgacgtcgtataagcaccatgaaagtggaaaagaatgagggagggagggagggagtattcattgattag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Frigida

Protein Analysis

109

Amino Acids

12.66

Weight (kDa)

6.22

Isoelectric Point (pI)

60.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 266
AatII GACGTC 1 cut(s) 270
AccB1I GGYRCC 1 cut(s) 242
AclWI GGATC 2 cut(s) 201, 234
AcyI GRCGYC 2 cut(s) 243, 267
AgsI TTSAA 1 cut(s) 198
AjnI CCWGG 1 cut(s) 222
AluBI AGCT 1 cut(s) 30
AluI AGCT 1 cut(s) 30
Alw21I GWGCWC 1 cut(s) 110
Alw26I GTCTC 2 cut(s) 85, 252
AlwI GGATC 2 cut(s) 201, 234
Ama87I CYCGRG 1 cut(s) 31
AoxI GGCC 1 cut(s) 101
ApeKI GCWGC 1 cut(s) 36
AspLEI GCGC 1 cut(s) 245
AspS9I GGNCC 2 cut(s) 114, 220
AvaI CYCGRG 1 cut(s) 31
AvaII GGWCC 2 cut(s) 114, 220
BanI GGYRCC 1 cut(s) 242
BauI CACGAG 2 cut(s) 4, 230
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 1 cut(s) 48
BccI CCATC 3 cut(s) 168, 195, 255
BceAI ACGGC 1 cut(s) 88
BciT130I CCWGG 1 cut(s) 224
BcoDI GTCTC 2 cut(s) 85, 252
BfoI RGCGCY 1 cut(s) 246
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
Bme1390I CCNGG 1 cut(s) 224
Bme18I GGWCC 2 cut(s) 114, 220
BmeT110I CYCGRG 1 cut(s) 31
BmgT120I GGNCC 2 cut(s) 114, 220
BmiI GGNNCC 1 cut(s) 244
BmrFI CCNGG 1 cut(s) 224
BpuEI CTTGAG 2 cut(s) 94, 103
BsaBI GATNNNNATC 1 cut(s) 205
BsaHI GRCGYC 2 cut(s) 243, 267
BsaI GGTCTC 1 cut(s) 85
BsaXI ACNNNNNCTCC 2 cut(s) 169, 199
Bse8I GATNNNNATC 1 cut(s) 205
BseBI CCWGG 1 cut(s) 224
BseGI GGATG 1 cut(s) 247
BseJI GATNNNNATC 1 cut(s) 205
BseRI GAGGAG 1 cut(s) 103
BseXI GCAGC 1 cut(s) 48
BshFI GGCC 1 cut(s) 103
BshNI GGYRCC 1 cut(s) 242
BsiHKAI GWGCWC 1 cut(s) 110
BsiHKCI CYCGRG 1 cut(s) 31
BsmAI GTCTC 2 cut(s) 85, 252
BsmBI CGTCTC 1 cut(s) 252
BsnI GGCC 1 cut(s) 103
Bso31I GGTCTC 1 cut(s) 85
BsoBI CYCGRG 1 cut(s) 31
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 68, 206, 226
BspANI GGCC 1 cut(s) 103
BspLI GGNNCC 1 cut(s) 244
BspPI GGATC 2 cut(s) 201, 234
BspT107I GGYRCC 1 cut(s) 242
BspTNI GGTCTC 1 cut(s) 85
BssMI GATC 3 cut(s) 68, 206, 226
BssNI GRCGYC 2 cut(s) 243, 267
BssSI CACGAG 2 cut(s) 4, 230
Bst2BI CACGAG 2 cut(s) 4, 230
Bst2UI CCWGG 1 cut(s) 224
BstACI GRCGYC 2 cut(s) 243, 267
BstC8I GCNNGC 2 cut(s) 125, 129
BstF5I GGATG 1 cut(s) 247
BstH2I RGCGCY 1 cut(s) 246
BstHHI GCGC 1 cut(s) 245
BstKTI GATC 3 cut(s) 71, 209, 229
BstMAI GTCTC 2 cut(s) 85, 252
BstMBI GATC 3 cut(s) 68, 206, 226
BstMWI GCNNNNNNNGC 1 cut(s) 36
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 1 cut(s) 222
BstV1I GCAGC 1 cut(s) 48
BstX2I RGATCY 2 cut(s) 206, 226
BstXI CCANNNNNNTGG 2 cut(s) 217, 288
BstYI RGATCY 2 cut(s) 206, 226
BsuRI GGCC 1 cut(s) 103
BtgZI GCGATG 1 cut(s) 161
BtsCI GGATG 1 cut(s) 247
Cac8I GCNNGC 2 cut(s) 125, 129
CfoI GCGC 1 cut(s) 245
Cfr13I GGNCC 2 cut(s) 114, 220
CviAII CATG 1 cut(s) 282
CviJI RGCY 4 cut(s) 20, 30, 103, 127
CviKI_1 RGCY 4 cut(s) 20, 30, 103, 127
DinI GGCGCC 1 cut(s) 244
DpnI GATC 3 cut(s) 70, 208, 228
DpnII GATC 3 cut(s) 68, 206, 226
DrdI GACNNNNNNGTC 1 cut(s) 266
DseDI GACNNNNNNGTC 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 114, 220
Eco88I CYCGRG 1 cut(s) 31
EcoO109I RGGNCCY 1 cut(s) 114
EcoRII CCWGG 1 cut(s) 222
EgeI GGCGCC 1 cut(s) 244
EheI GGCGCC 1 cut(s) 244
Esp3I CGTCTC 1 cut(s) 252
FaeI CATG 1 cut(s) 285
FaiI YATR 3 cut(s) 192, 274, 283
FatI CATG 1 cut(s) 281
Fnu4HI GCNGC 1 cut(s) 37
FokI GGATG 1 cut(s) 234
Fsp4HI GCNGC 1 cut(s) 37
GlaI GCGC 1 cut(s) 244
GluI GCNGC 1 cut(s) 37
HaeII RGCGCY 1 cut(s) 246
HaeIII GGCC 1 cut(s) 103
HhaI GCGC 1 cut(s) 245
Hin1I GRCGYC 2 cut(s) 243, 267
Hin1II CATG 1 cut(s) 285
Hin6I GCGC 1 cut(s) 243
HinP1I GCGC 1 cut(s) 243
Hpy166II GTNNAC 1 cut(s) 156
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 1 cut(s) 232
Hpy8I GTNNAC 1 cut(s) 156
Hpy99I CGWCG 3 cut(s) 266, 269, 272
HpyAV CCTTC 2 cut(s) 6, 93
HpyCH4IV ACGT 1 cut(s) 267
HpyF10VI GCNNNNNNNGC 1 cut(s) 36
HpySE526I ACGT 1 cut(s) 267
Hsp92I GRCGYC 2 cut(s) 243, 267
Hsp92II CATG 1 cut(s) 285
HspAI GCGC 1 cut(s) 243
KasI GGCGCC 1 cut(s) 242
Kzo9I GATC 3 cut(s) 68, 206, 226
LmnI GCTCC 1 cut(s) 136
LpnPI CCDG 5 cut(s) 40, 70, 141, 209, 236
Lsp1109I GCAGC 1 cut(s) 48
MaeII ACGT 1 cut(s) 267
MaeIII GTNAC 1 cut(s) 232
MalI GATC 3 cut(s) 70, 208, 228
MboI GATC 3 cut(s) 68, 206, 226
MboII GAAGA 1 cut(s) 210
MflI RGATCY 2 cut(s) 206, 226
MhlI GDGCHC 1 cut(s) 110
Mly113I GGCGCC 1 cut(s) 243
MmeI TCCRAC 1 cut(s) 234
MnlI CCTC 9 cut(s) 31, 81, 127, 144, 159, 294, 298, 302, 306
MslI CAYNNNNRTG 1 cut(s) 286
MspR9I CCNGG 1 cut(s) 224
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 1 cut(s) 36
NarI GGCGCC 1 cut(s) 243
NdeII GATC 3 cut(s) 68, 206, 226
NlaIII CATG 1 cut(s) 285
NlaIV GGNNCC 1 cut(s) 244
NmuCI GTSAC 1 cut(s) 232
PaeR7I CTCGAG 1 cut(s) 31
PcsI WCGNNNNNNNCGW 3 cut(s) 29, 83, 267
PflFI GACNNNGTC 1 cut(s) 266
PkrI GCNGC 1 cut(s) 38
PluTI GGCGCC 1 cut(s) 246
PpuMI RGGWCCY 1 cut(s) 114
Psp5II RGGWCCY 1 cut(s) 114
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
PspN4I GGNNCC 1 cut(s) 244
PspPI GGNCC 2 cut(s) 114, 220
PspPPI RGGWCCY 1 cut(s) 114
PspXI VCTCGAGB 1 cut(s) 31
PsuI RGATCY 2 cut(s) 206, 226
PsyI GACNNNGTC 1 cut(s) 266
RseI CAYNNNNRTG 1 cut(s) 286
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 3 cut(s) 68, 206, 226
Sau96I GGNCC 2 cut(s) 114, 220
ScrFI CCNGG 1 cut(s) 224
SduI GDGCHC 1 cut(s) 110
SetI ASST 6 cut(s) 32, 86, 116, 155, 225, 270
SfoI GGCGCC 1 cut(s) 244
Sfr274I CTCGAG 1 cut(s) 31
SinI GGWCC 2 cut(s) 114, 220
SlaI CTCGAG 1 cut(s) 31
SmiMI CAYNNNNRTG 1 cut(s) 286
SmlI CTYRAG 3 cut(s) 31, 109, 118
SmoI CTYRAG 3 cut(s) 31, 109, 118
SspDI GGCGCC 1 cut(s) 242
StyD4I CCNGG 1 cut(s) 222
TaiI ACGT 1 cut(s) 270
TaqI TCGA 3 cut(s) 23, 32, 86
TseFI GTSAC 1 cut(s) 232
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 232
TspDTI ATGAA 3 cut(s) 196, 298, 312
Tth111I GACNNNGTC 1 cut(s) 266
VpaK11BI GGWCC 2 cut(s) 114, 220
XhoI CTCGAG 1 cut(s) 31
ZraI GACGTC 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.