Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0019048

Physical Location & Seq

Genomic Coordinates Forward (+)

28339991 .. 28355923

Gene Structure 15933 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00351770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGGCGAGTGAATTGGCAGGATTGGAGCTGAATGGCAGAATGAATACTAAGCTCGGCTATGGTCGTATGAGAGAGATATCGGCTGGTGAAGAAAGAGCAGCTCGGGCGAATTCCAGCTCGAGCTGTGTAGCTTCTCGGCCTCCTAGCGCCTTCCACGTGCTAAACATGTTTCCAACCTTGTTGCAGCTTGATTTGGCTGGAGGAAGTGAGATTGATGATGAAATGTCATCGTCCCAAACTCGAGAAATCCGAATCACGGATCAAACAAGGTCTGATCGCGAAACTAAGGAGTTCTTCATTTCGCATGTTGAGGCTTTTTCTTTTCAATTGGGAAAGCTGATTGGAACCATAAATGGCGGCGCCGTGAGGACCGGTGATGTTAAGTATCACTTGGGAACTTCTTATGATCGACCGACTAGAGGTGGGAAGAGAATTCATCTATCTTTGGTTGCAAATCCAAGTCACTTGGAGGTTGTGGATCCGATTGTCGTTGGAAAAACTAGAGCAAAGCAGTATTATTCAAATGATGTAGACAGAACCAAGAATATGGGGGTTTTGATCCTTGGAGATGGTAGCTTTGCTGGACAAGGTGTGGTCTACGAGACTCGCATCTTAGTGCTCTTCCTAATTACACCACCGGCGGGACCATACATATTATGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004591 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005947 GO:0006082 GO:0006091 GO:0006099 GO:0006101 GO:0008150 GO:0008152 GO:0009060 GO:0009353 GO:0009987 GO:0015980 GO:0016491 GO:0016624 GO:0016903 GO:0016999 GO:0017144 GO:0019752 GO:0030062 GO:0031974 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043436 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045239 GO:0045240 GO:0045252 GO:0045333 GO:0055114 GO:0070013 GO:0071704 GO:0072350 GO:0098798 GO:1902494 GO:1990204 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00020 ko00310 ko00380 ko01100 ko01110 ko01120 ko01130 ko01200 map00020 map00310 map00380 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

2-oxogl_dehyd_N E1_dh OxoGdeHyase_C Transket_pyr

Protein Analysis

220

Amino Acids

24.09

Weight (kDa)

7.88

Isoelectric Point (pI)

35.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019048)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002746 RLG00000030478
rosa_multiflora	Rmu_co8279067.1_g000001 Rmu_sc0001803.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105510 Rroxscaffold_3G00255670 Rroxscaffold_3G00255740 Rroxscaffold_5G00351220 Rroxscaffold_5G00351770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	359
AccI	GTMKAC	2 cut(s)	531, 597
AccII	CGCG	1 cut(s)	279
AciI	CCGC	2 cut(s)	357, 641
AclWI	GGATC	4 cut(s)	267, 473, 486, 553
AcsI	RAATTY	2 cut(s)	109, 432
AcvI	CACGTG	1 cut(s)	157
AcyI	GRCGYC	1 cut(s)	360
AfiI	CCNNNNNNNGG	3 cut(s)	256, 419, 641
AflIII	ACRYGT	1 cut(s)	165
AgeI	ACCGGT	1 cut(s)	371
AgsI	TTSAA	2 cut(s)	326, 522
AluBI	AGCT	9 cut(s)	28, 52, 101, 117, 123, 131, 187, 337, 576
AluI	AGCT	9 cut(s)	28, 52, 101, 117, 123, 131, 187, 337, 576
Alw21I	GWGCWC	1 cut(s)	621
Alw26I	GTCTC	1 cut(s)	596
AlwI	GGATC	4 cut(s)	267, 473, 486, 553
Ama87I	CYCGRG	3 cut(s)	102, 118, 240
AoxI	GGCC	1 cut(s)	137
ApeKI	GCWGC	2 cut(s)	98, 184
ApoI	RAATTY	2 cut(s)	109, 432
AsiGI	ACCGGT	1 cut(s)	371
AspLEI	GCGC	2 cut(s)	149, 362
AspS9I	GGNCC	2 cut(s)	369, 644
AsuHPI	GGTGA	2 cut(s)	98, 386
AvaI	CYCGRG	3 cut(s)	102, 118, 240
AvaII	GGWCC	2 cut(s)	369, 644
BamHI	GGATCC	1 cut(s)	478
BanI	GGYRCC	1 cut(s)	359
BbrPI	CACGTG	1 cut(s)	157
Bbv12I	GWGCWC	1 cut(s)	621
BbvI	GCAGC	2 cut(s)	110, 196
BccI	CCATC	1 cut(s)	563
BceAI	ACGGC	1 cut(s)	347
BcoDI	GTCTC	1 cut(s)	596
BfaI	CTAG	3 cut(s)	144, 417, 501
BfoI	RGCGCY	2 cut(s)	150, 363
BisI	GCNGC	3 cut(s)	99, 185, 358
BlsI	GCNGC	3 cut(s)	100, 186, 359
Bme18I	GGWCC	2 cut(s)	369, 644
BmeT110I	CYCGRG	3 cut(s)	102, 118, 240
BmgT120I	GGNCC	2 cut(s)	369, 644
BmiI	GGNNCC	4 cut(s)	346, 361, 480, 645
BmsI	GCATC	1 cut(s)	618
BpmI	CTGGAG	1 cut(s)	219
BsaAI	YACGTR	1 cut(s)	157
BsaHI	GRCGYC	1 cut(s)	360
BsaJI	CCNNGG	1 cut(s)	562
BsaWI	WCCGGW	1 cut(s)	371
Bsc4I	CCNNNNNNNGG	3 cut(s)	256, 419, 641
Bse118I	RCCGGY	2 cut(s)	371, 637
BseDI	CCNNGG	1 cut(s)	562
BseLI	CCNNNNNNNGG	3 cut(s)	256, 419, 641
BseXI	GCAGC	2 cut(s)	110, 196
Bsh1236I	CGCG	1 cut(s)	279
Bsh1285I	CGRYCG	1 cut(s)	413
BshFI	GGCC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	359
BshTI	ACCGGT	1 cut(s)	371
BsiEI	CGRYCG	1 cut(s)	413
BsiHKAI	GWGCWC	1 cut(s)	621
BsiHKCI	CYCGRG	3 cut(s)	102, 118, 240
BsiSI	CCGG	2 cut(s)	372, 638
BslFI	GGGAC	2 cut(s)	217, 657
BslI	CCNNNNNNNGG	3 cut(s)	256, 419, 641
BsmAI	GTCTC	1 cut(s)	596
BsmFI	GGGAC	2 cut(s)	217, 657
BsnI	GGCC	1 cut(s)	139
BsoBI	CYCGRG	3 cut(s)	102, 118, 240
Bsp1286I	GDGCHC	1 cut(s)	621
Bsp143I	GATC	5 cut(s)	259, 274, 406, 478, 558
Bsp68I	TCGCGA	1 cut(s)	279
BspACI	CCGC	2 cut(s)	357, 641
BspANI	GGCC	1 cut(s)	139
BspFNI	CGCG	1 cut(s)	279
BspLI	GGNNCC	4 cut(s)	346, 361, 480, 645
BspPI	GGATC	4 cut(s)	267, 473, 486, 553
BspQI	GCTCTTC	1 cut(s)	626
BspT107I	GGYRCC	1 cut(s)	359
BsrFI	RCCGGY	2 cut(s)	371, 637
BssAI	RCCGGY	2 cut(s)	371, 637
BssECI	CCNNGG	1 cut(s)	562
BssMI	GATC	5 cut(s)	259, 274, 406, 478, 558
BssNI	GRCGYC	1 cut(s)	360
BssT1I	CCWWGG	1 cut(s)	562
Bst6I	CTCTTC	2 cut(s)	422, 626
BstACI	GRCGYC	1 cut(s)	360
BstBAI	YACGTR	1 cut(s)	157
BstDEI	CTNAG	3 cut(s)	48, 285, 613
BstFNI	CGCG	1 cut(s)	279
BstH2I	RGCGCY	2 cut(s)	150, 363
BstHHI	GCGC	2 cut(s)	149, 362
BstKTI	GATC	5 cut(s)	262, 277, 409, 481, 561
BstMAI	GTCTC	1 cut(s)	596
BstMBI	GATC	5 cut(s)	259, 274, 406, 478, 558
BstMCI	CGRYCG	1 cut(s)	413
BstMWI	GCNNNNNNNGC	1 cut(s)	104
BstNSI	RCATGY	2 cut(s)	169, 308
BstUI	CGCG	1 cut(s)	279
BstV1I	GCAGC	2 cut(s)	110, 196
BstX2I	RGATCY	1 cut(s)	478
BstXI	CCANNNNNNTGG	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	478
BsuRI	GGCC	1 cut(s)	139
BtuMI	TCGCGA	1 cut(s)	279
CfoI	GCGC	2 cut(s)	149, 362
Cfr10I	RCCGGY	2 cut(s)	371, 637
Cfr13I	GGNCC	2 cut(s)	369, 644
CspAI	ACCGGT	1 cut(s)	371
CviAII	CATG	2 cut(s)	166, 305
DdeI	CTNAG	3 cut(s)	48, 285, 613
DinI	GGCGCC	1 cut(s)	361
DpnI	GATC	5 cut(s)	261, 276, 408, 480, 560
DpnII	GATC	5 cut(s)	259, 274, 406, 478, 558
Eam1104I	CTCTTC	2 cut(s)	422, 626
EarI	CTCTTC	2 cut(s)	422, 626
Eco130I	CCWWGG	1 cut(s)	562
Eco32I	GATATC	1 cut(s)	78
Eco47I	GGWCC	2 cut(s)	369, 644
Eco72I	CACGTG	1 cut(s)	157
Eco88I	CYCGRG	3 cut(s)	102, 118, 240
EcoRI	GAATTC	2 cut(s)	109, 432
EcoRV	GATATC	1 cut(s)	78
EcoT14I	CCWWGG	1 cut(s)	562
EgeI	GGCGCC	1 cut(s)	361
EheI	GGCGCC	1 cut(s)	361
ErhI	CCWWGG	1 cut(s)	562
FaeI	CATG	2 cut(s)	169, 308
FalI	AAGNNNNNCTT	4 cut(s)	278, 310, 374, 406
FaqI	GGGAC	2 cut(s)	217, 657
FatI	CATG	2 cut(s)	165, 304
FauI	CCCGC	1 cut(s)	634
FblI	GTMKAC	2 cut(s)	531, 597
Fnu4HI	GCNGC	3 cut(s)	99, 185, 358
Fsp4HI	GCNGC	3 cut(s)	99, 185, 358
FspBI	CTAG	3 cut(s)	144, 417, 501
GlaI	GCGC	2 cut(s)	148, 361
GluI	GCNGC	3 cut(s)	99, 185, 358
GsuI	CTGGAG	1 cut(s)	219
HaeII	RGCGCY	2 cut(s)	150, 363
HaeIII	GGCC	1 cut(s)	139
HapII	CCGG	2 cut(s)	372, 638
HhaI	GCGC	2 cut(s)	149, 362
Hin1I	GRCGYC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	169, 308
Hin6I	GCGC	2 cut(s)	147, 360
HinP1I	GCGC	2 cut(s)	147, 360
HinfI	GANTC	2 cut(s)	252, 604
HpaII	CCGG	2 cut(s)	372, 638
HphI	GGTGA	2 cut(s)	98, 386
Hpy166II	GTNNAC	2 cut(s)	532, 598
Hpy188I	TCNGA	3 cut(s)	251, 274, 483
Hpy188III	TCNNGA	2 cut(s)	242, 278
Hpy8I	GTNNAC	2 cut(s)	532, 598
HpyAV	CCTTC	1 cut(s)	160
HpyCH4IV	ACGT	1 cut(s)	156
HpyCH4V	TGCA	2 cut(s)	184, 452
HpyF10VI	GCNNNNNNNGC	1 cut(s)	104
HpyF3I	CTNAG	3 cut(s)	48, 285, 613
HpySE526I	ACGT	1 cut(s)	156
Hsp92I	GRCGYC	1 cut(s)	360
Hsp92II	CATG	2 cut(s)	169, 308
HspAI	GCGC	2 cut(s)	147, 360
KasI	GGCGCC	1 cut(s)	359
Kzo9I	GATC	5 cut(s)	259, 274, 406, 478, 558
LguI	GCTCTTC	1 cut(s)	626
LmnI	GCTCC	1 cut(s)	25
LpnPI	CCDG	7 cut(s)	3, 69, 127, 183, 385, 567, 651
Lsp1109I	GCAGC	2 cut(s)	110, 196
LweI	GCATC	1 cut(s)	618
MaeI	CTAG	3 cut(s)	144, 417, 501
MaeII	ACGT	1 cut(s)	156
MaeIII	GTNAC	1 cut(s)	461
MalI	GATC	5 cut(s)	261, 276, 408, 480, 560
MboI	GATC	5 cut(s)	259, 274, 406, 478, 558
MboII	GAAGA	4 cut(s)	101, 286, 439, 613
MfeI	CAATTG	1 cut(s)	326
MflI	RGATCY	1 cut(s)	478
MhlI	GDGCHC	1 cut(s)	621
MluCI	AATT	5 cut(s)	11, 109, 326, 432, 627
Mly113I	GGCGCC	1 cut(s)	360
MlyI	GAGTC	1 cut(s)	598
MmeI	TCCRAC	2 cut(s)	197, 472
MnlI	CCTC	6 cut(s)	150, 194, 304, 360, 413, 463
MseI	TTAA	1 cut(s)	381
MslI	CAYNNNNRTG	1 cut(s)	614
MspI	CCGG	2 cut(s)	372, 638
MunI	CAATTG	1 cut(s)	326
MvnI	CGCG	1 cut(s)	279
MwoI	GCNNNNNNNGC	1 cut(s)	104
NarI	GGCGCC	1 cut(s)	360
NdeII	GATC	5 cut(s)	259, 274, 406, 478, 558
NlaIII	CATG	2 cut(s)	169, 308
NlaIV	GGNNCC	4 cut(s)	346, 361, 480, 645
NmeAIII	GCCGAG	2 cut(s)	33, 115
NmuCI	GTSAC	1 cut(s)	461
NruI	TCGCGA	1 cut(s)	279
NspI	RCATGY	2 cut(s)	169, 308
PaeR7I	CTCGAG	2 cut(s)	118, 240
PciI	ACATGT	1 cut(s)	165
PciSI	GCTCTTC	1 cut(s)	626
PcsI	WCGNNNNNNNCGW	1 cut(s)	247
PfeI	GAWTC	1 cut(s)	252
PinAI	ACCGGT	1 cut(s)	371
PkrI	GCNGC	3 cut(s)	100, 186, 359
PleI	GAGTC	1 cut(s)	598
PluTI	GGCGCC	1 cut(s)	363
PmaCI	CACGTG	1 cut(s)	157
PmlI	CACGTG	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	598
Ppu21I	YACGTR	1 cut(s)	157
PscI	ACATGT	1 cut(s)	165
PspCI	CACGTG	1 cut(s)	157
PspN4I	GGNNCC	4 cut(s)	346, 361, 480, 645
PspPI	GGNCC	2 cut(s)	369, 644
PspXI	VCTCGAGB	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	478
RruI	TCGCGA	1 cut(s)	279
RseI	CAYNNNNRTG	1 cut(s)	614
SapI	GCTCTTC	1 cut(s)	626
SaqAI	TTAA	1 cut(s)	381
SatI	GCNGC	3 cut(s)	99, 185, 358
Sau3AI	GATC	5 cut(s)	259, 274, 406, 478, 558
Sau96I	GGNCC	2 cut(s)	369, 644
SchI	GAGTC	1 cut(s)	598
SduI	GDGCHC	1 cut(s)	621
SfaNI	GCATC	1 cut(s)	618
SfoI	GGCGCC	1 cut(s)	361
Sfr274I	CTCGAG	2 cut(s)	118, 240
SgrAI	CRCCGGYG	1 cut(s)	637
SinI	GGWCC	2 cut(s)	369, 644
SlaI	CTCGAG	2 cut(s)	118, 240
SmiMI	CAYNNNNRTG	1 cut(s)	614
SmlI	CTYRAG	2 cut(s)	118, 240
SmoI	CTYRAG	2 cut(s)	118, 240
Sse9I	AATT	5 cut(s)	11, 109, 326, 432, 627
SsiI	CCGC	2 cut(s)	357, 641
SspDI	GGCGCC	1 cut(s)	359
SspMI	CTAG	3 cut(s)	144, 417, 501
StyI	CCWWGG	1 cut(s)	562
TaiI	ACGT	1 cut(s)	159
TaqI	TCGA	3 cut(s)	119, 241, 409
TaqII	GACCGA	1 cut(s)	427
TasI	AATT	5 cut(s)	11, 109, 326, 432, 627
TauI	GCSGC	1 cut(s)	360
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	381
Tru9I	TTAA	1 cut(s)	381
TseFI	GTSAC	1 cut(s)	461
TseI	GCWGC	2 cut(s)	98, 184
Tsp45I	GTSAC	1 cut(s)	461
TspDTI	ATGAA	4 cut(s)	56, 234, 286, 425
TspGWI	ACGGA	1 cut(s)	272
VpaK11BI	GGWCC	2 cut(s)	369, 644
XapI	RAATTY	2 cut(s)	109, 432
XceI	RCATGY	2 cut(s)	169, 308
XcmI	CCANNNNNNNNNTGG	1 cut(s)	654
XhoI	CTCGAG	2 cut(s)	118, 240
XmiI	GTMKAC	2 cut(s)	531, 597
XspI	CTAG	3 cut(s)	144, 417, 501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.