Rroxscaffold_5G00351220

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0019048
Physical Location & Seq
Forward (+)
27258321 .. 27263067
4747 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00351220.1

Sequence Viewer

Length: 819 bp
ATGAGAGAGATATCGGCTGGTGAAGAAAGAGCAGCTCGGGCAAATTCCAGCTCGAGCTGTGTAGCTTCTCGGCCTCTAGCGCCTTCCACGGAAGTTTTAATTGACTTCAAGGTGAATGAAATTGCTTTTGGAATCAAGTCGATCGGAGGTCTGTGGAGGAAGATATGGCCAGACAAAGAGAGCCCAGAAAACGATGGGGAAAGAAAGATTTCTGTCGTTGACAGTCCCACTTCTCGGCCTCGATTCTTCTTCTCCAGCTCGTTTCAAGTTCGATTGGTTGTCCAGACTTCATGTATAGACCAAGGTGAACAAAAGCCCTCCAAGAACTCGGCCAAAAGTGGTCGGAGTTGGGAGAACGATGGAGGCAAAGGGGAGAGGTCGCTGCTGGGCTCGGGAGAGAAATGGGGAGGAATATCTGGAGTTCCAGAAATTCTGCATTTGCCAACAAATATTTCTGTGCAACCACATCCTATCGAACTGAAGCATAAACATAAGTGTATTTGTCTTCCTCCTGATTCTAACCTCATTAGTGATGTCAAAAAACTGGCGACACCCAGACCTCAAAGACCTCAGCCTCTATCTCAATTCACCCAGACGTTCAAGACCTCCTTCTTCCTCTTCAAGAAGCTCAAGAGGACAGTCAAAGAAAGATTTCCCAGAGTTTCTGACGCCGAGATCGATGCTCTACTCCCACACAAGGTCACTCTTTGTTCTTCTCTAATAATAATGGCTGCTTATCAATCTCTTTTGAGGACTGAATCAATTTGGGTTGAGGTGGGTGTCGCGATGGGGTTGGGAGTGGGTGGCGATGAACGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

272

Amino Acids

30.05

Weight (kDa)

9.4

Isoelectric Point (pI)

48.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 785
AcoI YGGCCR 2 cut(s) 167, 330
AcsI RAATTY 2 cut(s) 43, 429
AcuI CTGAAG 1 cut(s) 500
AcyI GRCGYC 1 cut(s) 669
AfiI CCNNNNNNNGG 2 cut(s) 234, 697
AgsI TTSAA 4 cut(s) 109, 266, 601, 622
AjuI GAANNNNNNNTTGG 4 cut(s) 111, 143, 436, 468
AluBI AGCT 6 cut(s) 35, 51, 57, 65, 258, 628
AluI AGCT 6 cut(s) 35, 51, 57, 65, 258, 628
Ama87I CYCGRG 3 cut(s) 36, 52, 391
AoxI GGCC 4 cut(s) 71, 167, 236, 330
ApeKI GCWGC 3 cut(s) 32, 382, 731
ApoI RAATTY 2 cut(s) 43, 429
Asp700I GAANNNNTTC 2 cut(s) 208, 651
AspLEI GCGC 1 cut(s) 82
AsuHPI GGTGA 4 cut(s) 32, 124, 317, 580
AvaI CYCGRG 3 cut(s) 36, 52, 391
BalI TGGCCA 1 cut(s) 169
BanII GRGCYC 2 cut(s) 185, 392
BbsI GAAGAC 1 cut(s) 497
BbvCI CCTCAGC 1 cut(s) 570
BbvI GCAGC 3 cut(s) 44, 369, 718
BccI CCATC 3 cut(s) 188, 353, 781
BcgI CGANNNNNNTGC 2 cut(s) 662, 696
BfaI CTAG 1 cut(s) 77
BfoI RGCGCY 1 cut(s) 83
BisI GCNGC 3 cut(s) 33, 383, 732
BlsI GCNGC 3 cut(s) 34, 384, 733
BmeT110I CYCGRG 3 cut(s) 36, 52, 391
BmsI GCATC 1 cut(s) 670
BpiI GAAGAC 1 cut(s) 497
BpmI CTGGAG 2 cut(s) 238, 438
Bpu10I CCTNAGC 1 cut(s) 570
BpuEI CTTGAG 1 cut(s) 614
Bsa29I ATCGAT 1 cut(s) 678
BsaHI GRCGYC 1 cut(s) 669
BsaJI CCNNGG 2 cut(s) 87, 301
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 697
Bse1I ACTGG 1 cut(s) 549
BseCI ATCGAT 1 cut(s) 678
BseDI CCNNGG 2 cut(s) 87, 301
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 2 cut(s) 234, 697
BseMII CTCAG 1 cut(s) 584
BseNI ACTGG 1 cut(s) 549
BseXI GCAGC 3 cut(s) 44, 369, 718
BseYI CCCAGC 1 cut(s) 385
Bsh1236I CGCG 1 cut(s) 785
Bsh1285I CGRYCG 1 cut(s) 144
BshFI GGCC 4 cut(s) 73, 169, 238, 332
BshVI ATCGAT 1 cut(s) 678
BsiEI CGRYCG 1 cut(s) 144
BsiHKCI CYCGRG 3 cut(s) 36, 52, 391
BslFI GGGAC 1 cut(s) 210
BslI CCNNNNNNNGG 2 cut(s) 234, 697
BsmFI GGGAC 1 cut(s) 210
BsnI GGCC 4 cut(s) 73, 169, 238, 332
BsoBI CYCGRG 3 cut(s) 36, 52, 391
Bsp1286I GDGCHC 2 cut(s) 185, 392
Bsp143I GATC 2 cut(s) 141, 675
Bsp68I TCGCGA 1 cut(s) 785
BspANI GGCC 4 cut(s) 73, 169, 238, 332
BspCNI CTCAG 1 cut(s) 583
BspDI ATCGAT 1 cut(s) 678
BspFNI CGCG 1 cut(s) 785
BsrI ACTGG 1 cut(s) 549
BssECI CCNNGG 2 cut(s) 87, 301
BssMI GATC 2 cut(s) 141, 675
BssNI GRCGYC 1 cut(s) 669
BssT1I CCWWGG 1 cut(s) 301
Bst4CI ACNGT 2 cut(s) 224, 640
Bst6I CTCTTC 1 cut(s) 623
BstACI GRCGYC 1 cut(s) 669
BstDEI CTNAG 1 cut(s) 570
BstDSI CCRYGG 1 cut(s) 87
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 785
BstH2I RGCGCY 1 cut(s) 83
BstHHI GCGC 1 cut(s) 82
BstKTI GATC 2 cut(s) 144, 678
BstMBI GATC 2 cut(s) 141, 675
BstMCI CGRYCG 1 cut(s) 144
BstMWI GCNNNNNNNGC 2 cut(s) 38, 79
BstUI CGCG 1 cut(s) 785
BstV1I GCAGC 3 cut(s) 44, 369, 718
BstV2I GAAGAC 1 cut(s) 497
Bsu15I ATCGAT 1 cut(s) 678
BsuRI GGCC 4 cut(s) 73, 169, 238, 332
BsuTUI ATCGAT 1 cut(s) 678
BtgI CCRYGG 1 cut(s) 87
BtgZI GCGATG 1 cut(s) 800
BtsCI GGATG 1 cut(s) 466
BtuMI TCGCGA 1 cut(s) 785
CfoI GCGC 1 cut(s) 82
ClaI ATCGAT 1 cut(s) 678
CseI GACGC 1 cut(s) 677
CviAII CATG 1 cut(s) 291
DdeI CTNAG 1 cut(s) 570
DpnI GATC 2 cut(s) 143, 677
DpnII GATC 2 cut(s) 141, 675
EaeI YGGCCR 2 cut(s) 167, 330
Eam1104I CTCTTC 1 cut(s) 623
EarI CTCTTC 1 cut(s) 623
Eco130I CCWWGG 1 cut(s) 301
Eco24I GRGCYC 2 cut(s) 185, 392
Eco32I GATATC 1 cut(s) 12
Eco57I CTGAAG 1 cut(s) 500
Eco88I CYCGRG 3 cut(s) 36, 52, 391
EcoRV GATATC 1 cut(s) 12
EcoT14I CCWWGG 1 cut(s) 301
EcoT38I GRGCYC 2 cut(s) 185, 392
ErhI CCWWGG 1 cut(s) 301
FaeI CATG 1 cut(s) 294
FaiI YATR 5 cut(s) 166, 292, 296, 486, 492
FalI AAGNNNNNCTT 2 cut(s) 593, 625
FaqI GGGAC 1 cut(s) 210
FatI CATG 1 cut(s) 290
Fnu4HI GCNGC 3 cut(s) 33, 383, 732
FokI GGATG 1 cut(s) 453
FriOI GRGCYC 2 cut(s) 185, 392
Fsp4HI GCNGC 3 cut(s) 33, 383, 732
FspBI CTAG 1 cut(s) 77
GlaI GCGC 1 cut(s) 81
GluI GCNGC 3 cut(s) 33, 383, 732
GsaI CCCAGC 1 cut(s) 389
GsuI CTGGAG 2 cut(s) 238, 438
HaeII RGCGCY 1 cut(s) 83
HaeIII GGCC 4 cut(s) 73, 169, 238, 332
HgaI GACGC 1 cut(s) 677
HhaI GCGC 1 cut(s) 82
Hin1I GRCGYC 1 cut(s) 669
Hin1II CATG 1 cut(s) 294
Hin6I GCGC 1 cut(s) 80
HinP1I GCGC 1 cut(s) 80
HincII GTYRAC 1 cut(s) 220
HindII GTYRAC 1 cut(s) 220
HinfI GANTC 4 cut(s) 132, 243, 515, 758
HphI GGTGA 4 cut(s) 32, 124, 317, 580
Hpy166II GTNNAC 2 cut(s) 220, 308
Hpy188I TCNGA 3 cut(s) 146, 345, 667
Hpy188III TCNNGA 9 cut(s) 283, 393, 417, 425, 512, 601, 622, 631, 784
Hpy8I GTNNAC 2 cut(s) 220, 308
HpyAV CCTTC 2 cut(s) 93, 619
HpyCH4III ACNGT 2 cut(s) 224, 640
HpyCH4IV ACGT 1 cut(s) 596
HpyCH4V TGCA 2 cut(s) 436, 460
HpyF10VI GCNNNNNNNGC 2 cut(s) 38, 79
HpyF3I CTNAG 1 cut(s) 570
HpySE526I ACGT 1 cut(s) 596
Hsp92I GRCGYC 1 cut(s) 669
Hsp92II CATG 1 cut(s) 294
HspAI GCGC 1 cut(s) 80
Kzo9I GATC 2 cut(s) 141, 675
Lsp1109I GCAGC 3 cut(s) 44, 369, 718
LweI GCATC 1 cut(s) 670
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 596
MaeIII GTNAC 1 cut(s) 700
MalI GATC 2 cut(s) 143, 677
MboI GATC 2 cut(s) 141, 675
MboII GAAGA 8 cut(s) 35, 172, 238, 241, 497, 604, 610, 705
MhlI GDGCHC 2 cut(s) 185, 392
MlsI TGGCCA 1 cut(s) 169
MluCI AATT 6 cut(s) 43, 99, 120, 429, 584, 762
MluNI TGGCCA 1 cut(s) 169
MmeI TCCRAC 1 cut(s) 323
Mox20I TGGCCA 1 cut(s) 169
MroXI GAANNNNTTC 2 cut(s) 208, 651
MscI TGGCCA 1 cut(s) 169
MseI TTAA 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 169
MvnI CGCG 1 cut(s) 785
MwoI GCNNNNNNNGC 2 cut(s) 38, 79
NdeII GATC 2 cut(s) 141, 675
NlaIII CATG 1 cut(s) 294
NmeAIII GCCGAG 4 cut(s) 49, 214, 308, 697
NmuCI GTSAC 1 cut(s) 700
NruI TCGCGA 1 cut(s) 785
PaeR7I CTCGAG 1 cut(s) 52
PcsI WCGNNNNNNNCGW 1 cut(s) 675
PdmI GAANNNNTTC 2 cut(s) 208, 651
PfeI GAWTC 4 cut(s) 132, 243, 515, 758
PkrI GCNGC 3 cut(s) 34, 384, 733
Ple19I CGATCG 1 cut(s) 144
PspFI CCCAGC 1 cut(s) 385
PspXI VCTCGAGB 1 cut(s) 52
PvuI CGATCG 1 cut(s) 144
RruI TCGCGA 1 cut(s) 785
SaqAI TTAA 1 cut(s) 98
SatI GCNGC 3 cut(s) 33, 383, 732
Sau3AI GATC 2 cut(s) 141, 675
SduI GDGCHC 2 cut(s) 185, 392
SfaNI GCATC 1 cut(s) 670
Sfr274I CTCGAG 1 cut(s) 52
SlaI CTCGAG 1 cut(s) 52
SmlI CTYRAG 2 cut(s) 52, 629
SmoI CTYRAG 2 cut(s) 52, 629
Sse9I AATT 6 cut(s) 43, 99, 120, 429, 584, 762
SspI AATATT 1 cut(s) 451
SspMI CTAG 1 cut(s) 77
StyI CCWWGG 1 cut(s) 301
TaaI ACNGT 2 cut(s) 224, 640
TaiI ACGT 1 cut(s) 599
TaqI TCGA 6 cut(s) 53, 140, 241, 271, 474, 678
TasI AATT 6 cut(s) 43, 99, 120, 429, 584, 762
TfiI GAWTC 4 cut(s) 132, 243, 515, 758
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 3 cut(s) 32, 382, 731
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 2 cut(s) 132, 279
TspGWI ACGGA 1 cut(s) 104
XapI RAATTY 2 cut(s) 43, 429
XhoI CTCGAG 1 cut(s) 52
XmnI GAANNNNTTC 2 cut(s) 208, 651
XspI CTAG 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.