Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0019048

Physical Location & Seq

Genomic Coordinates Reverse (-)

62282216 .. 62282686

Gene Structure 471 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000030478

Sequence Viewer

CDS Protein Promoter (2k)

Length: 318 bp

ATGAATCTTATCCTGAAATCAGAGGCCATCAAGCTCAAAATCCAGATCCTAGAGTACGAGACCAAGGAGAGCCTTAACAAGCTAGAGAAGCGAGAGATCACCATCAACCAGAGCATTAAGATCACGCTTGTCAAGGTCGAGGAGACCAAGAAGGCCGCGTTCAAGGTCCTCAAGCGAGCCTGCTCCGACGACGAGTACGGCGAGGGGGACAACAGTGAGGGGTTGATGGAGATAAAGTTGATGTGCTTGAAGATAGAGATCCAACTCTCTGGACCTGGATATCATGACAGTTGGTGCCCCTCCAAAGTGAGACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Frigida

Protein Analysis

106

Amino Acids

12.07

Weight (kDa)

8.4

Isoelectric Point (pI)

44.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019048)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000002746 RLG00000030478
rosa_multiflora	Rmu_co8279067.1_g000001 Rmu_sc0001803.1_g000003
rosa_roxburghii	Rroxscaffold_2G00105510 Rroxscaffold_3G00255670 Rroxscaffold_3G00255740 Rroxscaffold_5G00351220 Rroxscaffold_5G00351770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	294
AccII	CGCG	1 cut(s)	158
AciI	CCGC	1 cut(s)	156
AclWI	GGATC	2 cut(s)	40, 253
AfaI	GTAC	2 cut(s)	56, 197
AgsI	TTSAA	2 cut(s)	163, 250
AjnI	CCWGG	1 cut(s)	274
AluBI	AGCT	2 cut(s)	34, 82
AluI	AGCT	2 cut(s)	34, 82
Alw26I	GTCTC	3 cut(s)	53, 137, 304
AlwI	GGATC	2 cut(s)	40, 253
AoxI	GGCC	2 cut(s)	24, 153
AspS9I	GGNCC	2 cut(s)	166, 272
AsuHPI	GGTGA	1 cut(s)	91
AvaII	GGWCC	2 cut(s)	166, 272
BaeGI	GKGCMC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	294
BccI	CCATC	3 cut(s)	35, 110, 220
BceAI	ACGGC	1 cut(s)	214
BciT130I	CCWGG	1 cut(s)	276
BcoDI	GTCTC	3 cut(s)	53, 137, 304
BfaI	CTAG	2 cut(s)	50, 83
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
Bme1390I	CCNGG	1 cut(s)	276
Bme18I	GGWCC	2 cut(s)	166, 272
BmgT120I	GGNCC	2 cut(s)	166, 272
BmiI	GGNNCC	1 cut(s)	296
BmrFI	CCNGG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	155
BsaBI	GATNNNNATC	2 cut(s)	101, 257
BsaI	GGTCTC	2 cut(s)	53, 137
BsaJI	CCNNGG	1 cut(s)	63
BsaXI	ACNNNNNCTCC	2 cut(s)	221, 251
Bse8I	GATNNNNATC	2 cut(s)	101, 257
BseBI	CCWGG	1 cut(s)	276
BseDI	CCNNGG	1 cut(s)	63
BseJI	GATNNNNATC	2 cut(s)	101, 257
BseRI	GAGGAG	1 cut(s)	155
BseSI	GKGCMC	1 cut(s)	299
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	2 cut(s)	26, 155
BshNI	GGYRCC	1 cut(s)	294
BslFI	GGGAC	1 cut(s)	221
BsmAI	GTCTC	3 cut(s)	53, 137, 304
BsmBI	CGTCTC	1 cut(s)	304
BsmFI	GGGAC	1 cut(s)	221
BsnI	GGCC	2 cut(s)	26, 155
Bso31I	GGTCTC	2 cut(s)	53, 137
Bsp1286I	GDGCHC	1 cut(s)	299
Bsp143I	GATC	4 cut(s)	45, 96, 120, 258
BspACI	CCGC	1 cut(s)	156
BspANI	GGCC	2 cut(s)	26, 155
BspFNI	CGCG	1 cut(s)	158
BspHI	TCATGA	1 cut(s)	283
BspLI	GGNNCC	1 cut(s)	296
BspPI	GGATC	2 cut(s)	40, 253
BspT107I	GGYRCC	1 cut(s)	294
BspTNI	GGTCTC	2 cut(s)	53, 137
BssECI	CCNNGG	1 cut(s)	63
BssMI	GATC	4 cut(s)	45, 96, 120, 258
BssT1I	CCWWGG	1 cut(s)	63
Bst2UI	CCWGG	1 cut(s)	276
Bst4CI	ACNGT	2 cut(s)	215, 290
BstC8I	GCNNGC	2 cut(s)	177, 181
BstFNI	CGCG	1 cut(s)	158
BstKTI	GATC	4 cut(s)	48, 99, 123, 261
BstMAI	GTCTC	3 cut(s)	53, 137, 304
BstMBI	GATC	4 cut(s)	45, 96, 120, 258
BstMWI	GCNNNNNNNGC	1 cut(s)	88
BstNI	CCWGG	1 cut(s)	276
BstSCI	CCNGG	1 cut(s)	274
BstSLI	GKGCMC	1 cut(s)	299
BstUI	CGCG	1 cut(s)	158
BstX2I	RGATCY	2 cut(s)	45, 258
BstXI	CCANNNNNNTGG	1 cut(s)	269
BstYI	RGATCY	2 cut(s)	45, 258
BsuRI	GGCC	2 cut(s)	26, 155
BtsIMutI	CAGTG	1 cut(s)	220
Cac8I	GCNNGC	2 cut(s)	177, 181
CciI	TCATGA	1 cut(s)	283
Cfr13I	GGNCC	2 cut(s)	166, 272
Csp6I	GTAC	2 cut(s)	55, 196
CviAII	CATG	1 cut(s)	284
CviJI	RGCY	6 cut(s)	26, 34, 72, 82, 155, 179
CviKI_1	RGCY	6 cut(s)	26, 34, 72, 82, 155, 179
CviQI	GTAC	2 cut(s)	55, 196
DpnI	GATC	4 cut(s)	47, 98, 122, 260
DpnII	GATC	4 cut(s)	45, 96, 120, 258
Eco130I	CCWWGG	1 cut(s)	63
Eco31I	GGTCTC	2 cut(s)	53, 137
Eco32I	GATATC	1 cut(s)	281
Eco47I	GGWCC	2 cut(s)	166, 272
EcoO109I	RGGNCCY	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	274
EcoRV	GATATC	1 cut(s)	281
EcoT14I	CCWWGG	1 cut(s)	63
ErhI	CCWWGG	1 cut(s)	63
Esp3I	CGTCTC	1 cut(s)	304
FaeI	CATG	1 cut(s)	287
FaiI	YATR	1 cut(s)	285
FaqI	GGGAC	1 cut(s)	221
FatI	CATG	1 cut(s)	283
Fnu4HI	GCNGC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	2 cut(s)	50, 83
GluI	GCNGC	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	26, 155
Hin1II	CATG	1 cut(s)	287
HinfI	GANTC	1 cut(s)	4
HphI	GGTGA	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	22, 187
Hpy188III	TCNNGA	4 cut(s)	13, 43, 270, 284
Hpy99I	CGWCG	2 cut(s)	191, 194
HpyAV	CCTTC	1 cut(s)	145
HpyCH4III	ACNGT	2 cut(s)	215, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	88
Hsp92II	CATG	1 cut(s)	287
Kzo9I	GATC	4 cut(s)	45, 96, 120, 258
LmnI	GCTCC	1 cut(s)	188
LpnPI	CCDG	7 cut(s)	26, 56, 122, 193, 255, 261, 288
MaeI	CTAG	2 cut(s)	50, 83
MalI	GATC	4 cut(s)	47, 98, 122, 260
MboI	GATC	4 cut(s)	45, 96, 120, 258
MboII	GAAGA	1 cut(s)	262
MflI	RGATCY	2 cut(s)	45, 258
MhlI	GDGCHC	1 cut(s)	299
MmeI	TCCRAC	2 cut(s)	210, 286
MnlI	CCTC	6 cut(s)	16, 133, 179, 196, 211, 310
MseI	TTAA	2 cut(s)	75, 117
MspR9I	CCNGG	1 cut(s)	276
MvaI	CCWGG	1 cut(s)	276
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	88
NdeII	GATC	4 cut(s)	45, 96, 120, 258
NlaIII	CATG	1 cut(s)	287
NlaIV	GGNNCC	1 cut(s)	296
PagI	TCATGA	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	157
PpuMI	RGGWCCY	1 cut(s)	166
Psp5II	RGGWCCY	1 cut(s)	166
Psp6I	CCWGG	1 cut(s)	274
PspGI	CCWGG	1 cut(s)	274
PspN4I	GGNNCC	1 cut(s)	296
PspPI	GGNCC	2 cut(s)	166, 272
PspPPI	RGGWCCY	1 cut(s)	166
PsuI	RGATCY	2 cut(s)	45, 258
RsaI	GTAC	2 cut(s)	56, 197
RsaNI	GTAC	2 cut(s)	55, 196
SaqAI	TTAA	2 cut(s)	75, 117
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	4 cut(s)	45, 96, 120, 258
Sau96I	GGNCC	2 cut(s)	166, 272
ScrFI	CCNGG	1 cut(s)	276
SduI	GDGCHC	1 cut(s)	299
SetI	ASST	5 cut(s)	36, 84, 138, 168, 277
SinI	GGWCC	2 cut(s)	166, 272
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
SsiI	CCGC	1 cut(s)	156
SspMI	CTAG	2 cut(s)	50, 83
StyD4I	CCNGG	1 cut(s)	274
StyI	CCWWGG	1 cut(s)	63
TaaI	ACNGT	2 cut(s)	215, 290
TaqI	TCGA	1 cut(s)	138
TauI	GCSGC	1 cut(s)	158
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	2 cut(s)	75, 117
Tru9I	TTAA	2 cut(s)	75, 117
TscAI	CASTG	1 cut(s)	220
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	166, 272
XspI	CTAG	2 cut(s)	50, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.