RLG00000003237

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0019046
Physical Location & Seq
Reverse (-)
45921430 .. 45922811
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003237

Sequence Viewer

Length: 957 bp
ATGGCTTGCTTCCGTTCTCAATCTGCAGACCCAGAAGAAACTTCTTGGTCGATTGACATTAATAGCTCAAGCAGCAGCAGCTACAACTTGGCAGCAGTCAAGCTTCCCCAAGATGGAATCGCAGACTCATACGGCATGTTCATGCAACGGCCTCGTATGTCTGAAGGACTCATCGCGCTACAGTCCCCATTTCACATATGCAATCCCATGACCGGTGAGTCTATGCACTTGTCTCCTCCTCCAATGCGTCCCCCCAAAGATGAGTGGAAGCCGTTTGTTTCTGGTTTTGGGTTTAGTCCCATCAGCCGTGTTTATAAGGTCCTAGTTATGCACCGCAACGAATCAAAGGCCAAGTTCATGCAAATATCACCGCCTTTTATTTTAGACGATGATGCCTATTATTACGACCACTGTAACCTTGTAATAGTGAGAGGTTGCCTTTCTTTCGTTGCCTCCAGGACTAACGAAATTAATGTCTGGGTGATGGAAAATTATGGTGTGAACGAGTCTTGGACCCATGAATACGAATTTATAGGCACATTTAAACCATACGATGTGCGAATTAAAATATGGGTACAGCTACTGAAAATAAAAAACGAAGGGCTAGTATTGCTGTTACGTGAGGACGGATTCTATGCTTCTACTTGTACTCTTAGAACCTGCGGCGAGCCTCGGATGGTAGAGGAGGCTAAATTGGCTAGTGGGATGCCATCCACGATTACGAGTGCATGTGCCTTTACACCAAACGTTGCTGGTCCTGCTATGAACATATCTCACAATGTGAGAATCCAAATGGTTTGGAGGTGTACACTTTCGGGCTTTCGGGCCGGATGTCGTCTTGATGACGATGATGAAGGGGTTCCACGTGCCTTTGGGGCGGTAGGAGAGCTAAATCGATGGTCCAGATTCGAAGAAGGTGCCGAGGTTGAGAGTGAGCTCCTTGGACTCTGCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

319

Amino Acids

35.81

Weight (kDa)

5.48

Isoelectric Point (pI)

57.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FBA_3 PF08268 30 - 116 3.1e-09 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019046)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003237
rosa_multiflora Rmu_sc0000841.1_g000026
rosa_roxburghii Rroxscaffold_3G00250670
rosa_samantha Rh7AG236500 Rh7BG232000 Rh7BG232100 Rh7CG252200 Rh7CG252300 Rh7DG242500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
AasI GACNNNNNNGTC 1 cut(s) 217
Acc36I ACCTGC 1 cut(s) 668
AccB1I GGYRCC 1 cut(s) 917
AccII CGCG 1 cut(s) 176
AciI CCGC 4 cut(s) 334, 371, 663, 878
AclI AACGTT 1 cut(s) 747
AcsI RAATTY 1 cut(s) 527
AcuI CTGAAG 1 cut(s) 183
AcvI CACGTG 1 cut(s) 866
AdeI CACNNNGTG 1 cut(s) 781
AfaI GTAC 3 cut(s) 576, 649, 808
AfiI CCNNNNNNNGG 2 cut(s) 113, 212
AgeI ACCGGT 1 cut(s) 212
AjnI CCWGG 1 cut(s) 455
AluBI AGCT 6 cut(s) 66, 81, 103, 580, 889, 937
AluI AGCT 6 cut(s) 66, 81, 103, 580, 889, 937
Alw21I GWGCWC 1 cut(s) 939
Alw26I GTCTC 1 cut(s) 237
AlwNI CAGNNNCTG 1 cut(s) 583
AoxI GGCC 3 cut(s) 149, 348, 825
ApeKI GCWGC 4 cut(s) 72, 75, 78, 92
ApoI RAATTY 1 cut(s) 527
ArsI GACNNNNNNTTYG 2 cut(s) 459, 491
AseI ATTAAT 2 cut(s) 60, 471
AsiGI ACCGGT 1 cut(s) 212
Asp700I GAANNNNTTC 1 cut(s) 858
AspLEI GCGC 1 cut(s) 178
AspS9I GGNCC 5 cut(s) 319, 513, 755, 825, 900
AsuHPI GGTGA 3 cut(s) 227, 360, 493
AsuII TTCGAA 1 cut(s) 909
AvaII GGWCC 4 cut(s) 319, 513, 755, 900
BanI GGYRCC 1 cut(s) 917
BanII GRGCYC 1 cut(s) 939
BbrPI CACGTG 1 cut(s) 866
Bbv12I GWGCWC 1 cut(s) 939
BbvI GCAGC 4 cut(s) 84, 87, 90, 104
BccI CCATC 6 cut(s) 107, 308, 478, 670, 718, 891
BceAI ACGGC 4 cut(s) 148, 164, 256, 291
BcgI CGANNNNNNTGC 4 cut(s) 134, 168, 899, 933
BciT130I CCWGG 1 cut(s) 457
BcoDI GTCTC 1 cut(s) 237
BfaI CTAG 3 cut(s) 323, 605, 699
BfmI CTRYAG 2 cut(s) 24, 179
BfuAI ACCTGC 1 cut(s) 668
BglI GCCNNNNNGGC 1 cut(s) 875
BisI GCNGC 5 cut(s) 73, 76, 79, 93, 664
BlsI GCNGC 5 cut(s) 74, 77, 80, 94, 665
Bme1390I CCNGG 1 cut(s) 457
Bme18I GGWCC 4 cut(s) 319, 513, 755, 900
BmgT120I GGNCC 5 cut(s) 319, 513, 755, 825, 900
BmiI GGNNCC 3 cut(s) 515, 861, 919
BmrFI CCNGG 1 cut(s) 457
BmsI GCATC 2 cut(s) 382, 696
BpmI CTGGAG 1 cut(s) 439
Bpu14I TTCGAA 1 cut(s) 909
BpuEI CTTGAG 1 cut(s) 52
Bsa29I ATCGAT 1 cut(s) 895
BsaAI YACGTR 2 cut(s) 620, 866
BsaJI CCNNGG 3 cut(s) 671, 921, 940
BsaWI WCCGGW 1 cut(s) 212
Bsc4I CCNNNNNNNGG 2 cut(s) 113, 212
Bse118I RCCGGY 2 cut(s) 212, 951
BseBI CCWGG 1 cut(s) 457
BseCI ATCGAT 1 cut(s) 895
BseDI CCNNGG 3 cut(s) 671, 921, 940
BseGI GGATG 4 cut(s) 681, 710, 711, 836
BseLI CCNNNNNNNGG 2 cut(s) 113, 212
BseRI GAGGAG 3 cut(s) 225, 228, 698
BseXI GCAGC 4 cut(s) 84, 87, 90, 104
Bsh1236I CGCG 1 cut(s) 176
BshFI GGCC 3 cut(s) 151, 350, 827
BshNI GGYRCC 1 cut(s) 917
BshTI ACCGGT 1 cut(s) 212
BshVI ATCGAT 1 cut(s) 895
BsiHKAI GWGCWC 1 cut(s) 939
BsiSI CCGG 3 cut(s) 213, 828, 952
BslFI GGGAC 3 cut(s) 169, 234, 282
BslI CCNNNNNNNGG 2 cut(s) 113, 212
BsmAI GTCTC 1 cut(s) 237
BsmFI GGGAC 3 cut(s) 169, 234, 282
BsnI GGCC 3 cut(s) 151, 350, 827
Bsp119I TTCGAA 1 cut(s) 909
Bsp1286I GDGCHC 1 cut(s) 939
Bsp1407I TGTACA 1 cut(s) 806
BspACI CCGC 4 cut(s) 334, 371, 663, 878
BspANI GGCC 3 cut(s) 151, 350, 827
BspDI ATCGAT 1 cut(s) 895
BspFNI CGCG 1 cut(s) 176
BspLI GGNNCC 3 cut(s) 515, 861, 919
BspMAI CTGCAG 1 cut(s) 28
BspMI ACCTGC 1 cut(s) 668
BspT104I TTCGAA 1 cut(s) 909
BspT107I GGYRCC 1 cut(s) 917
BsrFI RCCGGY 2 cut(s) 212, 951
BsrGI TGTACA 1 cut(s) 806
BssAI RCCGGY 2 cut(s) 212, 951
BssECI CCNNGG 3 cut(s) 671, 921, 940
BssT1I CCWWGG 1 cut(s) 940
Bst2UI CCWGG 1 cut(s) 457
Bst4CI ACNGT 2 cut(s) 183, 413
BstAUI TGTACA 1 cut(s) 806
BstBAI YACGTR 2 cut(s) 620, 866
BstBI TTCGAA 1 cut(s) 909
BstC8I GCNNGC 2 cut(s) 7, 668
BstDEI CTNAG 1 cut(s) 653
BstF5I GGATG 4 cut(s) 681, 710, 711, 836
BstFNI CGCG 1 cut(s) 176
BstHHI GCGC 1 cut(s) 178
BstMAI GTCTC 1 cut(s) 237
BstMWI GCNNNNNNNGC 6 cut(s) 72, 78, 610, 695, 758, 875
BstNI CCWGG 1 cut(s) 457
BstNSI RCATGY 2 cut(s) 139, 732
BstSCI CCNGG 1 cut(s) 455
BstSFI CTRYAG 2 cut(s) 24, 179
BstUI CGCG 1 cut(s) 176
BstV1I GCAGC 4 cut(s) 84, 87, 90, 104
Bsu15I ATCGAT 1 cut(s) 895
BsuRI GGCC 3 cut(s) 151, 350, 827
BsuTUI ATCGAT 1 cut(s) 895
BtgZI GCGATG 1 cut(s) 157
BtsCI GGATG 4 cut(s) 681, 710, 711, 836
BtsIMutI CAGTG 1 cut(s) 409
BveI ACCTGC 1 cut(s) 668
Cac8I GCNNGC 2 cut(s) 7, 668
CaiI CAGNNNCTG 1 cut(s) 583
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 2 cut(s) 212, 951
Cfr13I GGNCC 5 cut(s) 319, 513, 755, 825, 900
ClaI ATCGAT 1 cut(s) 895
CseI GACGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 575, 648, 807
CspAI ACCGGT 1 cut(s) 212
CviAII CATG 6 cut(s) 136, 142, 208, 358, 518, 729
CviQI GTAC 3 cut(s) 575, 648, 807
DdeI CTNAG 1 cut(s) 653
DraI TTTAAA 1 cut(s) 544
DraIII CACNNNGTG 1 cut(s) 781
DrdI GACNNNNNNGTC 1 cut(s) 217
DseDI GACNNNNNNGTC 1 cut(s) 217
Ecl136II GAGCTC 1 cut(s) 937
Eco130I CCWWGG 1 cut(s) 940
Eco24I GRGCYC 1 cut(s) 939
Eco47I GGWCC 4 cut(s) 319, 513, 755, 900
Eco53kI GAGCTC 1 cut(s) 937
Eco57I CTGAAG 1 cut(s) 183
Eco72I CACGTG 1 cut(s) 866
EcoICRI GAGCTC 1 cut(s) 937
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 940
EcoT38I GRGCYC 1 cut(s) 939
ErhI CCWWGG 1 cut(s) 940
FaeI CATG 6 cut(s) 139, 145, 211, 361, 521, 732
FaqI GGGAC 3 cut(s) 169, 234, 282
FatI CATG 6 cut(s) 135, 141, 207, 357, 517, 728
FauNDI CATATG 1 cut(s) 197
Fnu4HI GCNGC 5 cut(s) 73, 76, 79, 93, 664
FokI GGATG 4 cut(s) 688, 697, 718, 843
FriOI GRGCYC 1 cut(s) 939
Fsp4HI GCNGC 5 cut(s) 73, 76, 79, 93, 664
FspBI CTAG 3 cut(s) 323, 605, 699
GlaI GCGC 1 cut(s) 177
GluI GCNGC 5 cut(s) 73, 76, 79, 93, 664
GsuI CTGGAG 1 cut(s) 439
HaeIII GGCC 3 cut(s) 151, 350, 827
HapII CCGG 3 cut(s) 213, 828, 952
HgaI GACGC 1 cut(s) 236
HhaI GCGC 1 cut(s) 178
Hin1II CATG 6 cut(s) 139, 145, 211, 361, 521, 732
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HindIII AAGCTT 1 cut(s) 101
HpaII CCGG 3 cut(s) 213, 828, 952
HphI GGTGA 3 cut(s) 227, 360, 493
Hpy166II GTNNAC 3 cut(s) 502, 807, 809
Hpy188I TCNGA 2 cut(s) 163, 675
Hpy188III TCNNGA 2 cut(s) 839, 903
Hpy8I GTNNAC 3 cut(s) 502, 807, 809
HpyAV CCTTC 4 cut(s) 158, 593, 848, 908
HpyCH4III ACNGT 2 cut(s) 183, 413
HpyCH4IV ACGT 3 cut(s) 619, 747, 865
HpyCH4V TGCA 7 cut(s) 26, 145, 201, 226, 331, 361, 728
HpyF10VI GCNNNNNNNGC 6 cut(s) 72, 78, 610, 695, 758, 875
HpyF3I CTNAG 1 cut(s) 653
HpySE526I ACGT 3 cut(s) 619, 747, 865
Hsp92II CATG 6 cut(s) 139, 145, 211, 361, 521, 732
HspAI GCGC 1 cut(s) 176
LmnI GCTCC 1 cut(s) 942
Lsp1109I GCAGC 4 cut(s) 84, 87, 90, 104
LweI GCATC 2 cut(s) 382, 696
MaeI CTAG 3 cut(s) 323, 605, 699
MaeII ACGT 3 cut(s) 619, 747, 865
MaeIII GTNAC 2 cut(s) 413, 615
MboII GAAGA 2 cut(s) 47, 923
MhlI GDGCHC 1 cut(s) 939
MluCI AATT 5 cut(s) 468, 490, 527, 561, 692
MlyI GAGTC 5 cut(s) 119, 162, 227, 515, 939
MroXI GAANNNNTTC 1 cut(s) 858
MseI TTAA 4 cut(s) 60, 471, 543, 564
MslI CAYNNNNRTG 1 cut(s) 140
MspI CCGG 3 cut(s) 213, 828, 952
MspR9I CCNGG 1 cut(s) 457
MvaI CCWGG 1 cut(s) 457
MvnI CGCG 1 cut(s) 176
MwoI GCNNNNNNNGC 6 cut(s) 72, 78, 610, 695, 758, 875
NdeI CATATG 1 cut(s) 197
NlaIII CATG 6 cut(s) 139, 145, 211, 361, 521, 732
NlaIV GGNNCC 3 cut(s) 515, 861, 919
NmeAIII GCCGAG 1 cut(s) 946
NspI RCATGY 2 cut(s) 139, 732
NspV TTCGAA 1 cut(s) 909
PdmI GAANNNNTTC 1 cut(s) 858
PfeI GAWTC 5 cut(s) 117, 341, 630, 786, 906
PfoI TCCNGGA 1 cut(s) 455
PinAI ACCGGT 1 cut(s) 212
PkrI GCNGC 5 cut(s) 74, 77, 80, 94, 665
PleI GAGTC 5 cut(s) 119, 162, 226, 514, 939
PmaCI CACGTG 1 cut(s) 866
PmlI CACGTG 1 cut(s) 866
PpsI GAGTC 5 cut(s) 119, 162, 226, 514, 939
Ppu21I YACGTR 2 cut(s) 620, 866
PpuMI RGGWCCY 1 cut(s) 319
PshBI ATTAAT 2 cut(s) 60, 471
PsiI TTATAA 1 cut(s) 315
Psp124BI GAGCTC 1 cut(s) 939
Psp1406I AACGTT 1 cut(s) 747
Psp5II RGGWCCY 1 cut(s) 319
Psp6I CCWGG 1 cut(s) 455
PspCI CACGTG 1 cut(s) 866
PspGI CCWGG 1 cut(s) 455
PspN4I GGNNCC 3 cut(s) 515, 861, 919
PspPI GGNCC 5 cut(s) 319, 513, 755, 825, 900
PspPPI RGGWCCY 1 cut(s) 319
PstI CTGCAG 1 cut(s) 28
PstNI CAGNNNCTG 1 cut(s) 583
RsaI GTAC 3 cut(s) 576, 649, 808
RsaNI GTAC 3 cut(s) 575, 648, 807
RseI CAYNNNNRTG 1 cut(s) 140
SacI GAGCTC 1 cut(s) 939
SaqAI TTAA 4 cut(s) 60, 471, 543, 564
SatI GCNGC 5 cut(s) 73, 76, 79, 93, 664
Sau96I GGNCC 5 cut(s) 319, 513, 755, 825, 900
SchI GAGTC 5 cut(s) 119, 162, 227, 515, 939
ScrFI CCNGG 1 cut(s) 457
SduI GDGCHC 1 cut(s) 939
SfaNI GCATC 2 cut(s) 382, 696
SfcI CTRYAG 2 cut(s) 24, 179
SfuI TTCGAA 1 cut(s) 909
SinI GGWCC 4 cut(s) 319, 513, 755, 900
SmiMI CAYNNNNRTG 1 cut(s) 140
SmlI CTYRAG 1 cut(s) 67
SmoI CTYRAG 1 cut(s) 67
Sse9I AATT 5 cut(s) 468, 490, 527, 561, 692
SsiI CCGC 4 cut(s) 334, 371, 663, 878
SspMI CTAG 3 cut(s) 323, 605, 699
SstI GAGCTC 1 cut(s) 939
StyD4I CCNGG 1 cut(s) 455
StyI CCWWGG 1 cut(s) 940
TaaI ACNGT 2 cut(s) 183, 413
TaiI ACGT 3 cut(s) 622, 750, 868
TaqI TCGA 3 cut(s) 50, 895, 909
TasI AATT 5 cut(s) 468, 490, 527, 561, 692
TatI WGTACW 2 cut(s) 647, 806
TauI GCSGC 1 cut(s) 666
TfiI GAWTC 5 cut(s) 117, 341, 630, 786, 906
Tru1I TTAA 4 cut(s) 60, 471, 543, 564
Tru9I TTAA 4 cut(s) 60, 471, 543, 564
TscAI CASTG 1 cut(s) 416
TseI GCWGC 4 cut(s) 72, 75, 78, 92
TspDTI ATGAA 5 cut(s) 130, 346, 534, 779, 867
TspGWI ACGGA 1 cut(s) 642
TspRI CASTG 1 cut(s) 416
VpaK11BI GGWCC 4 cut(s) 319, 513, 755, 900
VspI ATTAAT 2 cut(s) 60, 471
XapI RAATTY 1 cut(s) 527
XceI RCATGY 2 cut(s) 139, 732
XmnI GAANNNNTTC 1 cut(s) 858
XspI CTAG 3 cut(s) 323, 605, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.