Rroxscaffold_3G00250670

F-box protein At3g07870-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0019046
Physical Location & Seq
Reverse (-)
44447914 .. 44454578
6665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250670.1

Sequence Viewer

Length: 894 bp
ATGTGTAGAAGACGGCGGTGGAGAGCCGTAATTCAATGGGTTATCAATTGGATTGTCGGAGATTGTGACGAACCCCATAACAACCGTAGCTCCTCCTTGAATTTAGATATGAAGGTATCCATCGACCTCTTCAAAGATTCTTGCATCTCACACAACCTAGCATATCGTGATCTTTGTGAACTTGTAATTCGTCGGAACCTCGTGGGGGTGGTGCTGGTGATGGATAACTTGGTTAGAAAGGAAATTGAGAAGGAGGTGGTGGGTAGCTTGGTTGCAATGGAAACCGGGTACCGTGAGGATGATAAGAAGGAAGGCGTAAATTACCAAAGCCGTAACCCATCGGACTCGCCGGATATAGGCCCGATTGCGGGCTCGATACCAATTGTTGCTATCCCCGAGATCAGTCATGATCATTCCATTTCCTTGATTGTCCACCCAAGTGCTCAATCTTGGCGTGGTTATCTCTCAGACTCTCAGTTCACCAAAGTCCTATTCTCACGTGCACCACCAACCACTTGCTTTTTGATCCGCGGCTTCACTCTGGATTATGGAAGAAAGCCCTCAATCTGCAGACCCAGGAGAAACTTCTTGGTCGATATTGACTTTGATAGCTCAAGCAGCAGCAGCTACAACTTGGCAGCACTCAAGCTTCCCCAAGATGGAATCGCAGACTCATACGGCATGTCATATGATTTTGTAAAGATTGTAGGTTCATACAACGGCCTCGTATGTCTGAAGGACTCATCGAGCTACAATCCCCCTTTTCACATATGCAATCCCATGACTGGTGAGTCTATGCACTTGTCTCCTCCTCCAATGCGTACTCCCATAGATGAGTGGAAGCCGTTTGTTTCTGGTTTTGGGTTTATTCCCATCGATCAGCCGTGTCTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like FBA_1 FBA_3

Protein Analysis

297

Amino Acids

33.45

Weight (kDa)

6.38

Isoelectric Point (pI)

52.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019046)

Species Orthologous Gene IDs
rosa_laevigata RLG00000003237
rosa_multiflora Rmu_sc0000841.1_g000026
rosa_roxburghii Rroxscaffold_3G00250670
rosa_samantha Rh7AG236500 Rh7BG232000 Rh7BG232100 Rh7CG252200 Rh7CG252300 Rh7DG242500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 790
Acc65I GGTACC 1 cut(s) 288
AccB1I GGYRCC 1 cut(s) 288
AccII CGCG 1 cut(s) 531
AciI CCGC 4 cut(s) 16, 368, 529, 531
AclWI GGATC 1 cut(s) 520
AcsI RAATTY 1 cut(s) 100
AcuI CTGAAG 1 cut(s) 755
AcvI CACGTG 1 cut(s) 500
AfaI GTAC 2 cut(s) 290, 823
AfiI CCNNNNNNNGG 6 cut(s) 205, 356, 367, 368, 659, 785
AgsI TTSAA 3 cut(s) 35, 100, 133
AjnI CCWGG 1 cut(s) 575
AjuI GAANNNNNNNTTGG 2 cut(s) 476, 508
AleI CACNNNNGTG 1 cut(s) 438
AluBI AGCT 6 cut(s) 90, 267, 612, 627, 649, 750
AluI AGCT 6 cut(s) 90, 267, 612, 627, 649, 750
Alw21I GWGCWC 2 cut(s) 445, 505
Alw26I GTCTC 1 cut(s) 810
Alw44I GTGCAC 1 cut(s) 501
AlwI GGATC 1 cut(s) 520
Ama87I CYCGRG 1 cut(s) 395
AoxI GGCC 2 cut(s) 358, 721
ApaLI GTGCAC 1 cut(s) 501
ApeKI GCWGC 4 cut(s) 618, 621, 624, 638
ApoI RAATTY 1 cut(s) 100
Asp718I GGTACC 1 cut(s) 288
AspS9I GGNCC 1 cut(s) 359
AsuC2I CCSGG 1 cut(s) 286
AsuHPI GGTGA 3 cut(s) 229, 472, 800
AvaI CYCGRG 1 cut(s) 395
BaeGI GKGCMC 1 cut(s) 505
BanI GGYRCC 1 cut(s) 288
BanII GRGCYC 1 cut(s) 374
BauI CACGAG 1 cut(s) 200
BbrPI CACGTG 1 cut(s) 500
BbsI GAAGAC 1 cut(s) 16
Bbv12I GWGCWC 2 cut(s) 445, 505
BbvI GCAGC 4 cut(s) 630, 633, 636, 650
BccI CCATC 5 cut(s) 128, 214, 346, 653, 881
BceAI ACGGC 7 cut(s) 11, 29, 315, 694, 736, 829, 868
BciT130I CCWGG 1 cut(s) 577
BciVI GTATCC 1 cut(s) 127
BclI TGATCA 1 cut(s) 409
BcnI CCSGG 1 cut(s) 286
BcoDI GTCTC 1 cut(s) 810
BfaI CTAG 1 cut(s) 158
BfmI CTRYAG 1 cut(s) 568
BfuI GTATCC 1 cut(s) 127
BisI GCNGC 5 cut(s) 532, 619, 622, 625, 639
BlsI GCNGC 5 cut(s) 533, 620, 623, 626, 640
Bme1390I CCNGG 2 cut(s) 286, 577
BmeT110I CYCGRG 1 cut(s) 395
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 2 cut(s) 197, 290
BmrFI CCNGG 2 cut(s) 286, 577
BmsI GCATC 1 cut(s) 153
BpiI GAAGAC 1 cut(s) 16
BpuEI CTTGAG 2 cut(s) 598, 629
BpuMI CCSGG 1 cut(s) 286
Bsa29I ATCGAT 1 cut(s) 876
BsaAI YACGTR 1 cut(s) 500
BsaJI CCNNGG 2 cut(s) 529, 575
BsaXI ACNNNNNCTCC 2 cut(s) 74, 104
Bsc4I CCNNNNNNNGG 6 cut(s) 205, 356, 367, 368, 659, 785
Bse1I ACTGG 1 cut(s) 790
Bse3DI GCAATG 1 cut(s) 282
BseBI CCWGG 1 cut(s) 577
BseCI ATCGAT 1 cut(s) 876
BseDI CCNNGG 2 cut(s) 529, 575
BseGI GGATG 1 cut(s) 304
BseLI CCNNNNNNNGG 6 cut(s) 205, 356, 367, 368, 659, 785
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 480, 488
BseNI ACTGG 1 cut(s) 790
BseRI GAGGAG 3 cut(s) 82, 798, 801
BseSI GKGCMC 1 cut(s) 505
BseXI GCAGC 4 cut(s) 630, 633, 636, 650
Bsh1236I CGCG 1 cut(s) 531
BshFI GGCC 2 cut(s) 360, 723
BshNI GGYRCC 1 cut(s) 288
BshVI ATCGAT 1 cut(s) 876
BsiHKAI GWGCWC 2 cut(s) 445, 505
BsiHKCI CYCGRG 1 cut(s) 395
BsiSI CCGG 2 cut(s) 285, 350
BslI CCNNNNNNNGG 6 cut(s) 205, 356, 367, 368, 659, 785
BsmAI GTCTC 1 cut(s) 810
BsnI GGCC 2 cut(s) 360, 723
BsoBI CYCGRG 1 cut(s) 395
Bsp1286I GDGCHC 3 cut(s) 374, 445, 505
Bsp143I GATC 5 cut(s) 169, 399, 409, 525, 877
BspACI CCGC 4 cut(s) 16, 368, 529, 531
BspANI GGCC 2 cut(s) 360, 723
BspCNI CTCAG 2 cut(s) 479, 487
BspDI ATCGAT 1 cut(s) 876
BspFNI CGCG 1 cut(s) 531
BspHI TCATGA 1 cut(s) 406
BspLI GGNNCC 2 cut(s) 197, 290
BspMAI CTGCAG 1 cut(s) 572
BspPI GGATC 1 cut(s) 520
BspT107I GGYRCC 1 cut(s) 288
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 790
BssECI CCNNGG 2 cut(s) 529, 575
BssMI GATC 5 cut(s) 169, 399, 409, 525, 877
BssSI CACGAG 1 cut(s) 200
Bst2BI CACGAG 1 cut(s) 200
Bst2UI CCWGG 1 cut(s) 577
Bst4CI ACNGT 2 cut(s) 86, 293
Bst6I CTCTTC 1 cut(s) 134
BstBAI YACGTR 1 cut(s) 500
BstC8I GCNNGC 1 cut(s) 370
BstDEI CTNAG 2 cut(s) 466, 474
BstDSI CCRYGG 1 cut(s) 529
BstF5I GGATG 1 cut(s) 304
BstFNI CGCG 1 cut(s) 531
BstKTI GATC 5 cut(s) 172, 402, 412, 528, 880
BstMAI GTCTC 1 cut(s) 810
BstMBI GATC 5 cut(s) 169, 399, 409, 525, 877
BstMWI GCNNNNNNNGC 2 cut(s) 618, 624
BstNI CCWGG 1 cut(s) 577
BstNSI RCATGY 1 cut(s) 685
BstSCI CCNGG 2 cut(s) 284, 575
BstSFI CTRYAG 1 cut(s) 568
BstSLI GKGCMC 1 cut(s) 505
BstUI CGCG 1 cut(s) 531
BstV1I GCAGC 4 cut(s) 630, 633, 636, 650
BstV2I GAAGAC 1 cut(s) 16
Bsu15I ATCGAT 1 cut(s) 876
BsuI GTATCC 1 cut(s) 127
BsuRI GGCC 2 cut(s) 360, 723
BsuTUI ATCGAT 1 cut(s) 876
BtgI CCRYGG 1 cut(s) 529
BtsCI GGATG 1 cut(s) 304
Cac8I GCNNGC 1 cut(s) 370
CciI TCATGA 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 359
Cfr42I CCGCGG 1 cut(s) 532
ClaI ATCGAT 1 cut(s) 876
Csp6I GTAC 2 cut(s) 289, 822
CviAII CATG 3 cut(s) 407, 682, 781
CviQI GTAC 2 cut(s) 289, 822
DdeI CTNAG 2 cut(s) 466, 474
DpnI GATC 5 cut(s) 171, 401, 411, 527, 879
DpnII GATC 5 cut(s) 169, 399, 409, 525, 877
DrdI GACNNNNNNGTC 1 cut(s) 790
DseDI GACNNNNNNGTC 1 cut(s) 790
Eam1104I CTCTTC 1 cut(s) 134
EarI CTCTTC 1 cut(s) 134
Eco24I GRGCYC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 755
Eco72I CACGTG 1 cut(s) 500
Eco88I CYCGRG 1 cut(s) 395
EcoRII CCWGG 1 cut(s) 575
EcoT38I GRGCYC 1 cut(s) 374
FaeI CATG 3 cut(s) 410, 685, 784
FatI CATG 3 cut(s) 406, 681, 780
FauI CCCGC 1 cut(s) 361
FauNDI CATATG 2 cut(s) 688, 770
FbaI TGATCA 1 cut(s) 409
Fnu4HI GCNGC 5 cut(s) 532, 619, 622, 625, 639
FokI GGATG 1 cut(s) 311
FriOI GRGCYC 1 cut(s) 374
Fsp4HI GCNGC 5 cut(s) 532, 619, 622, 625, 639
FspBI CTAG 1 cut(s) 158
GluI GCNGC 5 cut(s) 532, 619, 622, 625, 639
HaeIII GGCC 2 cut(s) 360, 723
HapII CCGG 2 cut(s) 285, 350
Hin1II CATG 3 cut(s) 410, 685, 784
HindIII AAGCTT 1 cut(s) 647
HinfI GANTC 7 cut(s) 137, 344, 470, 663, 671, 740, 791
HpaII CCGG 2 cut(s) 285, 350
HphI GGTGA 3 cut(s) 229, 472, 800
Hpy166II GTNNAC 4 cut(s) 179, 433, 480, 503
Hpy188I TCNGA 5 cut(s) 59, 195, 343, 469, 735
Hpy188III TCNNGA 3 cut(s) 167, 407, 542
Hpy8I GTNNAC 4 cut(s) 179, 433, 480, 503
Hpy99I CGWCG 1 cut(s) 195
HpyAV CCTTC 5 cut(s) 106, 244, 301, 305, 730
HpyCH4III ACNGT 2 cut(s) 86, 293
HpyCH4IV ACGT 1 cut(s) 499
HpyCH4V TGCA 6 cut(s) 144, 275, 503, 570, 774, 799
HpyF10VI GCNNNNNNNGC 2 cut(s) 618, 624
HpyF3I CTNAG 2 cut(s) 466, 474
HpySE526I ACGT 1 cut(s) 499
Hsp92II CATG 3 cut(s) 410, 685, 784
KpnI GGTACC 1 cut(s) 292
Ksp22I TGATCA 1 cut(s) 409
KspI CCGCGG 1 cut(s) 532
Kzo9I GATC 5 cut(s) 169, 399, 409, 525, 877
LmnI GCTCC 1 cut(s) 95
LpnPI CCDG 8 cut(s) 200, 298, 363, 527, 562, 589, 771, 840
Lsp1109I GCAGC 4 cut(s) 630, 633, 636, 650
LweI GCATC 1 cut(s) 153
MaeI CTAG 1 cut(s) 158
MaeII ACGT 1 cut(s) 499
MaeIII GTNAC 2 cut(s) 65, 332
MalI GATC 5 cut(s) 171, 401, 411, 527, 879
MboI GATC 5 cut(s) 169, 399, 409, 525, 877
MboII GAAGA 3 cut(s) 21, 121, 564
MfeI CAATTG 2 cut(s) 46, 381
MhlI GDGCHC 3 cut(s) 374, 445, 505
MluCI AATT 7 cut(s) 30, 46, 100, 186, 243, 319, 381
MlyI GAGTC 5 cut(s) 338, 464, 665, 734, 800
MmeI TCCRAC 2 cut(s) 37, 173
MnlI CCTC 9 cut(s) 103, 137, 209, 247, 289, 571, 734, 819, 822
MslI CAYNNNNRTG 1 cut(s) 438
MspA1I CMGCKG 1 cut(s) 531
MspI CCGG 2 cut(s) 285, 350
MspR9I CCNGG 2 cut(s) 286, 577
MunI CAATTG 2 cut(s) 46, 381
MvaI CCWGG 1 cut(s) 577
MvnI CGCG 1 cut(s) 531
MwoI GCNNNNNNNGC 2 cut(s) 618, 624
NciI CCSGG 1 cut(s) 286
NdeI CATATG 2 cut(s) 688, 770
NdeII GATC 5 cut(s) 169, 399, 409, 525, 877
NlaIII CATG 3 cut(s) 410, 685, 784
NlaIV GGNNCC 2 cut(s) 197, 290
NmuCI GTSAC 1 cut(s) 65
NspI RCATGY 1 cut(s) 685
OliI CACNNNNGTG 1 cut(s) 438
PagI TCATGA 1 cut(s) 406
PfeI GAWTC 2 cut(s) 137, 663
PkrI GCNGC 5 cut(s) 533, 620, 623, 626, 640
PleI GAGTC 5 cut(s) 338, 464, 665, 734, 799
PmaCI CACGTG 1 cut(s) 500
PmlI CACGTG 1 cut(s) 500
PpsI GAGTC 5 cut(s) 338, 464, 665, 734, 799
Ppu21I YACGTR 1 cut(s) 500
Psp6I CCWGG 1 cut(s) 575
PspCI CACGTG 1 cut(s) 500
PspGI CCWGG 1 cut(s) 575
PspN4I GGNNCC 2 cut(s) 197, 290
PspPI GGNCC 1 cut(s) 359
PstI CTGCAG 1 cut(s) 572
RsaI GTAC 2 cut(s) 290, 823
RsaNI GTAC 2 cut(s) 289, 822
RseI CAYNNNNRTG 1 cut(s) 438
SacII CCGCGG 1 cut(s) 532
SatI GCNGC 5 cut(s) 532, 619, 622, 625, 639
Sau3AI GATC 5 cut(s) 169, 399, 409, 525, 877
Sau96I GGNCC 1 cut(s) 359
SchI GAGTC 5 cut(s) 338, 464, 665, 734, 800
ScrFI CCNGG 2 cut(s) 286, 577
SduI GDGCHC 3 cut(s) 374, 445, 505
SfaNI GCATC 1 cut(s) 153
SfcI CTRYAG 1 cut(s) 568
Sfr303I CCGCGG 1 cut(s) 532
SgrBI CCGCGG 1 cut(s) 532
SmiMI CAYNNNNRTG 1 cut(s) 438
SmlI CTYRAG 2 cut(s) 613, 644
SmoI CTYRAG 2 cut(s) 613, 644
Sse9I AATT 7 cut(s) 30, 46, 100, 186, 243, 319, 381
SsiI CCGC 4 cut(s) 16, 368, 529, 531
SspMI CTAG 1 cut(s) 158
StyD4I CCNGG 2 cut(s) 284, 575
TaaI ACNGT 2 cut(s) 86, 293
TaiI ACGT 1 cut(s) 502
TaqI TCGA 5 cut(s) 123, 374, 594, 746, 876
TasI AATT 7 cut(s) 30, 46, 100, 186, 243, 319, 381
TauI GCSGC 1 cut(s) 534
TfiI GAWTC 2 cut(s) 137, 663
TseFI GTSAC 1 cut(s) 65
TseI GCWGC 4 cut(s) 618, 621, 624, 638
Tsp45I GTSAC 1 cut(s) 65
TspDTI ATGAA 2 cut(s) 125, 702
VneI GTGCAC 1 cut(s) 501
XapI RAATTY 1 cut(s) 100
XceI RCATGY 1 cut(s) 685
XspI CTAG 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.